ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet64d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK106043.1| Oryza sativa (japonica cultivar-group) cDNA clon... 218 1e-53
2dbj|AK065358.1| Oryza sativa (japonica cultivar-group) cDNA clon... 218 1e-53
3dbj|AK059056.1| Oryza sativa (japonica cultivar-group) cDNA clon... 218 1e-53
4ref|NM_191551.1| Oryza sativa (japonica cultivar-group), predic... 216 4e-53
5dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 159 9e-36
6dbj|AP003309.3| Oryza sativa (japonica cultivar-group) genomic D... 159 9e-36
7dbj|AP003560.2| Oryza sativa (japonica cultivar-group) genomic D... 159 9e-36
8emb|AL691513.13| Mouse DNA sequence from clone RP23-451C8 on chr... 44 0.37
9gb|AC157903.3| Mus musculus chromosome 18, clone RP23-341E18, co... 42 1.5
10gb|AC134581.5| Mus musculus BAC clone RP24-90L20 from chromosome... 42 1.5
11gb|AC163394.4| Mus musculus chromosome 15, clone RP24-241D13, co... 42 1.5
12gb|AC102847.3| Mus musculus, clone RP24-406I1, complete sequence 42 1.5
13gb|AC145332.48| Felis catus clone rp86-207p24, complete sequence 42 1.5
14gb|AC103808.2| Homo sapiens chromosome 18, clone RP11-94B19, com... 42 1.5
15dbj|AK022038.1| Homo sapiens cDNA FLJ11976 fis, clone HEMBB1001253 42 1.5
16gb|AC102162.6| Mus musculus chromosome 18, clone RP23-419P4, com... 42 1.5
17gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 42 1.5
18gb|AC165090.3| Mus musculus BAC clone RP23-95H4 from chromosome ... 40 5.8
19emb|AL162417.23| Human DNA sequence from clone RP11-326L24 on ch... 40 5.8
20emb|BX640424.1| Bordetella parapertussis strain 12822, complete ... 40 5.8
21gb|AC107623.2| Homo sapiens chromosome 3 clone RP11-648C16, comp... 40 5.8
22gb|AC096970.2| Homo sapiens chromosome 3 clone RP11-321A23, comp... 40 5.8
23ref|XM_394171.2| PREDICTED: Apis mellifera similar to Transcript... 40 5.8
24gb|AC024560.26| Homo sapiens 3 BAC RP11-496H1 (Roswell Park Canc... 40 5.8
25gb|AC024937.21| Homo sapiens 3 BAC RP11-480A16 (Roswell Park Can... 40 5.8
26gb|AC124944.8| Homo sapiens 3 BAC RP11-352G9 (Roswell Park Cance... 40 5.8
27gb|AF333038.2| Streptomyces viridochromogenes Avilamycin A biosy... 40 5.8
28gb|AC002319.1|AC002319 Homo sapiens chromosome 9q34, clone 70C11... 40 5.8
29gb|AC131680.4| Mus musculus BAC clone RP23-346F8 from 8, complet... 40 5.8
30gb|AC001643.1|AC001643 Genomic sequence from Human 9q34, complet... 40 5.8

>dbj|AK106043.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-E03, full
           insert sequence
          Length = 1617

 Score =  218 bits (110), Expect = 1e-53
 Identities = 278/332 (83%), Gaps = 4/332 (1%)
 Strand = Plus / Plus

                                                                       
Query: 100 ctccatggataggctcgtcgcagccggcattcttgccttcctactgatcgcgtcggtagg 159
           |||||||||||||||| ||||   | || | |||| ||||||  ||||||| || |||||
Sbjct: 71  ctccatggataggctcctcgc---ctgcctccttggcttcctgttgatcgcttcagtagg 127

                                                                       
Query: 160 aagccatgcagctcgtgctccggggcaatactgggagtctgctcttcccaacactcccat 219
           ||||||||| |||||  |||||| |||||||||| | || |||||||||||| |||||||
Sbjct: 128 aagccatgccgctcggactccggagcaatactggaaatcagctcttcccaactctcccat 187

                                                                       
Query: 220 gccaagctccctctctcaactcctcgacacgcaagccggaggcacgtcggtgaacgtcgg 279
            || ||||| |||||||| || |||  |||   || ||||||||||||||||||||||||
Sbjct: 188 cccgagctcgctctctcagcttctcagcactgcaggcggaggcacgtcggtgaacgtcgg 247

                                                                       
Query: 280 ctcgggcggcgtccatgttgacgcgggccatgggatgcctgggggcacgacggtcgatgt 339
           |  ||||||||||||||| |||||||| || || | ||| || ||||| || || |||||
Sbjct: 248 cgggggcggcgtccatgtcgacgcggggcacggcaagcccggcggcacaaccgttgatgt 307

                                                                       
Query: 340 gggcaagggtggcgtcggcgtcaacgtgaagcctggcagcgccaagcccggcgggactac 399
            |||||||||||||||||||| ||||||||||||||   || |||||||||||| || ||
Sbjct: 308 aggcaagggtggcgtcggcgtgaacgtgaagcctggttacggcaagcccggcggcaccac 367

                                           
Query: 400 ggtcggcgtc-ggcagggcggcgtgggtgtca 430
           |||||||||| || ||||||||||||| ||||
Sbjct: 368 ggtcggcgtcgggaagggcggcgtgggagtca 399



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 344 aagggtggcgtcggcgtcaacgtgaagcc 372
           ||||| |||||||||||||||||||||||
Sbjct: 588 aagggcggcgtcggcgtcaacgtgaagcc 616



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 344 aagggtggcgtcggcgtcaacgtgaagcctggcagcgccaagcccggcgggactacggtc 403
           ||||| ||||||||||| |||||| |||| |||  || ||||||||| || || || |||
Sbjct: 519 aagggcggcgtcggcgtgaacgtgcagccaggctacggcaagcccgggggcaccaccgtc 578

                   
Query: 404 ggcgtcgg 411
           ||||||||
Sbjct: 579 ggcgtcgg 586



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                       
Query: 350 ggcgtcggcgtcaacgtgaagcctggcagcgccaagcccggcgggactacggtcggcgtc 409
           ||||| ||||| |||||| |||||||   || |||||||||||| || || |||||||||
Sbjct: 456 ggcgtgggcgtgaacgtgcagcctgggtacggcaagcccggcggcaccaccgtcggcgtc 515

             
Query: 410 gg 411
           ||
Sbjct: 516 gg 517



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>dbj|AK065358.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013011A15, full
           insert sequence
          Length = 1618

 Score =  218 bits (110), Expect = 1e-53
 Identities = 278/332 (83%), Gaps = 4/332 (1%)
 Strand = Plus / Plus

                                                                       
Query: 100 ctccatggataggctcgtcgcagccggcattcttgccttcctactgatcgcgtcggtagg 159
           |||||||||||||||| ||||   | || | |||| ||||||  ||||||| || |||||
Sbjct: 72  ctccatggataggctcctcgc---ctgcctccttggcttcctgttgatcgcttcagtagg 128

                                                                       
Query: 160 aagccatgcagctcgtgctccggggcaatactgggagtctgctcttcccaacactcccat 219
           ||||||||| |||||  |||||| |||||||||| | || |||||||||||| |||||||
Sbjct: 129 aagccatgccgctcggactccggagcaatactggaaatcagctcttcccaactctcccat 188

                                                                       
Query: 220 gccaagctccctctctcaactcctcgacacgcaagccggaggcacgtcggtgaacgtcgg 279
            || ||||| |||||||| || |||  |||   || ||||||||||||||||||||||||
Sbjct: 189 cccgagctcgctctctcagcttctcagcactgcaggcggaggcacgtcggtgaacgtcgg 248

                                                                       
Query: 280 ctcgggcggcgtccatgttgacgcgggccatgggatgcctgggggcacgacggtcgatgt 339
           |  ||||||||||||||| |||||||| || || | ||| || ||||| || || |||||
Sbjct: 249 cgggggcggcgtccatgtcgacgcggggcacggcaagcccggcggcacaaccgttgatgt 308

                                                                       
Query: 340 gggcaagggtggcgtcggcgtcaacgtgaagcctggcagcgccaagcccggcgggactac 399
            |||||||||||||||||||| ||||||||||||||   || |||||||||||| || ||
Sbjct: 309 aggcaagggtggcgtcggcgtgaacgtgaagcctggttacggcaagcccggcggcaccac 368

                                           
Query: 400 ggtcggcgtc-ggcagggcggcgtgggtgtca 430
           |||||||||| || ||||||||||||| ||||
Sbjct: 369 ggtcggcgtcgggaagggcggcgtgggagtca 400



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 344 aagggtggcgtcggcgtcaacgtgaagcc 372
           ||||| |||||||||||||||||||||||
Sbjct: 589 aagggcggcgtcggcgtcaacgtgaagcc 617



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 344 aagggtggcgtcggcgtcaacgtgaagcctggcagcgccaagcccggcgggactacggtc 403
           ||||| ||||||||||| |||||| |||| |||  || ||||||||| || || || |||
Sbjct: 520 aagggcggcgtcggcgtgaacgtgcagccaggctacggcaagcccgggggcaccaccgtc 579

                   
Query: 404 ggcgtcgg 411
           ||||||||
Sbjct: 580 ggcgtcgg 587



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                       
Query: 350 ggcgtcggcgtcaacgtgaagcctggcagcgccaagcccggcgggactacggtcggcgtc 409
           ||||| ||||| |||||| |||||||   || |||||||||||| || || |||||||||
Sbjct: 457 ggcgtgggcgtgaacgtgcagcctgggtacggcaagcccggcggcaccaccgtcggcgtc 516

             
Query: 410 gg 411
           ||
Sbjct: 517 gg 518



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>dbj|AK059056.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-F04, full
           insert sequence
          Length = 1616

 Score =  218 bits (110), Expect = 1e-53
 Identities = 278/332 (83%), Gaps = 4/332 (1%)
 Strand = Plus / Plus

                                                                       
Query: 100 ctccatggataggctcgtcgcagccggcattcttgccttcctactgatcgcgtcggtagg 159
           |||||||||||||||| ||||   | || | |||| ||||||  ||||||| || |||||
Sbjct: 63  ctccatggataggctcctcgc---ctgcctccttggcttcctgttgatcgcttcagtagg 119

                                                                       
Query: 160 aagccatgcagctcgtgctccggggcaatactgggagtctgctcttcccaacactcccat 219
           ||||||||| |||||  |||||| |||||||||| | || |||||||||||| |||||||
Sbjct: 120 aagccatgccgctcggactccggagcaatactggaaatcagctcttcccaactctcccat 179

                                                                       
Query: 220 gccaagctccctctctcaactcctcgacacgcaagccggaggcacgtcggtgaacgtcgg 279
            || ||||| |||||||| || |||  |||   || ||||||||||||||||||||||||
Sbjct: 180 cccgagctcgctctctcagcttctcagcactgcaggcggaggcacgtcggtgaacgtcgg 239

                                                                       
Query: 280 ctcgggcggcgtccatgttgacgcgggccatgggatgcctgggggcacgacggtcgatgt 339
           |  ||||||||||||||| |||||||| || || | ||| || ||||| || || |||||
Sbjct: 240 cgggggcggcgtccatgtcgacgcggggcacggcaagcccggcggcacaaccgttgatgt 299

                                                                       
Query: 340 gggcaagggtggcgtcggcgtcaacgtgaagcctggcagcgccaagcccggcgggactac 399
            |||||||||||||||||||| ||||||||||||||   || |||||||||||| || ||
Sbjct: 300 aggcaagggtggcgtcggcgtgaacgtgaagcctggttacggcaagcccggcggcaccac 359

                                           
Query: 400 ggtcggcgtc-ggcagggcggcgtgggtgtca 430
           |||||||||| || ||||||||||||| ||||
Sbjct: 360 ggtcggcgtcgggaagggcggcgtgggagtca 391



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 344 aagggtggcgtcggcgtcaacgtgaagcc 372
           ||||| |||||||||||||||||||||||
Sbjct: 580 aagggcggcgtcggcgtcaacgtgaagcc 608



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 344 aagggtggcgtcggcgtcaacgtgaagcctggcagcgccaagcccggcgggactacggtc 403
           ||||| ||||||||||| |||||| |||| |||  || ||||||||| || || || |||
Sbjct: 511 aagggcggcgtcggcgtgaacgtgcagccaggctacggcaagcccgggggcaccaccgtc 570

                   
Query: 404 ggcgtcgg 411
           ||||||||
Sbjct: 571 ggcgtcgg 578



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                       
Query: 350 ggcgtcggcgtcaacgtgaagcctggcagcgccaagcccggcgggactacggtcggcgtc 409
           ||||| ||||| |||||| |||||||   || |||||||||||| || || |||||||||
Sbjct: 448 ggcgtgggcgtgaacgtgcagcctgggtacggcaagcccggcggcaccaccgtcggcgtc 507

             
Query: 410 gg 411
           ||
Sbjct: 508 gg 509



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>ref|NM_191551.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1290

 Score =  216 bits (109), Expect = 4e-53
 Identities = 254/301 (84%), Gaps = 1/301 (0%)
 Strand = Plus / Plus

                                                                       
Query: 131 cttgccttcctactgatcgcgtcggtaggaagccatgcagctcgtgctccggggcaatac 190
           |||| ||||||  ||||||| || |||||||||||||| |||||  |||||| |||||||
Sbjct: 25  cttggcttcctgttgatcgcttcagtaggaagccatgccgctcggactccggagcaatac 84

                                                                       
Query: 191 tgggagtctgctcttcccaacactcccatgccaagctccctctctcaactcctcgacacg 250
           ||| | || |||||||||||| ||||||| || ||||| |||||||| || |||  ||| 
Sbjct: 85  tggaaatcagctcttcccaactctcccatcccgagctcgctctctcagcttctcagcact 144

                                                                       
Query: 251 caagccggaggcacgtcggtgaacgtcggctcgggcggcgtccatgttgacgcgggccat 310
             || |||||||||||||||||||||||||  ||||||||||||||| |||||||| || 
Sbjct: 145 gcaggcggaggcacgtcggtgaacgtcggcgggggcggcgtccatgtcgacgcggggcac 204

                                                                       
Query: 311 gggatgcctgggggcacgacggtcgatgtgggcaagggtggcgtcggcgtcaacgtgaag 370
           || | ||| || ||||| || || ||||| |||||||||||||||||||| |||||||||
Sbjct: 205 ggcaagcccggcggcacaaccgttgatgtaggcaagggtggcgtcggcgtgaacgtgaag 264

                                                                       
Query: 371 cctggcagcgccaagcccggcgggactacggtcggcgtc-ggcagggcggcgtgggtgtc 429
           |||||   || |||||||||||| || |||||||||||| || ||||||||||||| |||
Sbjct: 265 cctggttacggcaagcccggcggcaccacggtcggcgtcgggaagggcggcgtgggagtc 324

            
Query: 430 a 430
           |
Sbjct: 325 a 325



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 344 aagggtggcgtcggcgtcaacgtgaagcc 372
           ||||| |||||||||||||||||||||||
Sbjct: 514 aagggcggcgtcggcgtcaacgtgaagcc 542



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                       
Query: 344 aagggtggcgtcggcgtcaacgtgaagcctggcagcgccaagcccggcgggactacggtc 403
           ||||| ||||||||||| |||||| |||| |||  || ||||||||| || || || |||
Sbjct: 445 aagggcggcgtcggcgtgaacgtgcagccaggctacggcaagcccgggggcaccaccgtc 504

                   
Query: 404 ggcgtcgg 411
           ||||||||
Sbjct: 505 ggcgtcgg 512



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                       
Query: 350 ggcgtcggcgtcaacgtgaagcctggcagcgccaagcccggcgggactacggtcggcgtc 409
           ||||| ||||| |||||| |||||||   || |||||||||||| || || |||||||||
Sbjct: 382 ggcgtgggcgtgaacgtgcagcctgggtacggcaagcccggcggcaccaccgtcggcgtc 441

             
Query: 410 gg 411
           ||
Sbjct: 442 gg 443



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  159 bits (80), Expect = 9e-36
 Identities = 153/176 (86%), Gaps = 1/176 (0%)
 Strand = Plus / Plus

                                                                            
Query: 256      cggaggcacgtcggtgaacgtcggctcgggcggcgtccatgttgacgcgggccatgggat 315
                |||||||||||||||||||||||||  ||||||||||||||| |||||||| || || | 
Sbjct: 30584378 cggaggcacgtcggtgaacgtcggcgggggcggcgtccatgtcgacgcggggcacggcaa 30584437

                                                                            
Query: 316      gcctgggggcacgacggtcgatgtgggcaagggtggcgtcggcgtcaacgtgaagcctgg 375
                ||| || ||||| || || ||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 30584438 gcccggcggcacaaccgttgatgtaggcaagggtggcgtcggcgtgaacgtgaagcctgg 30584497

                                                                        
Query: 376      cagcgccaagcccggcgggactacggtcggcgtc-ggcagggcggcgtgggtgtca 430
                   || |||||||||||| || |||||||||||| || ||||||||||||| ||||
Sbjct: 30584498 ttacggcaagcccggcggcaccacggtcggcgtcgggaagggcggcgtgggagtca 30584553



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                            
Query: 145      gatcgcgtcggtaggaagccatgcagctcgtgctccggggcaatactgggagtctgctct 204
                |||||| || |||||||||||||| |||||  |||||| |||||||||| | || |||||
Sbjct: 30583798 gatcgcttcagtaggaagccatgccgctcggactccggagcaatactggaaatcagctct 30583857

                                                 
Query: 205      tcccaacactcccatgccaagctccctctctca 237
                ||||||| ||||||| || ||||| ||||||||
Sbjct: 30583858 tcccaactctcccatcccgagctcgctctctca 30583890



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 344      aagggtggcgtcggcgtcaacgtgaagcc 372
                ||||| |||||||||||||||||||||||
Sbjct: 30584742 aagggcggcgtcggcgtcaacgtgaagcc 30584770



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                            
Query: 344      aagggtggcgtcggcgtcaacgtgaagcctggcagcgccaagcccggcgggactacggtc 403
                ||||| ||||||||||| |||||| |||| |||  || ||||||||| || || || |||
Sbjct: 30584673 aagggcggcgtcggcgtgaacgtgcagccaggctacggcaagcccgggggcaccaccgtc 30584732

                        
Query: 404      ggcgtcgg 411
                ||||||||
Sbjct: 30584733 ggcgtcgg 30584740



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                            
Query: 350      ggcgtcggcgtcaacgtgaagcctggcagcgccaagcccggcgggactacggtcggcgtc 409
                ||||| ||||| |||||| |||||||   || |||||||||||| || || |||||||||
Sbjct: 30584610 ggcgtgggcgtgaacgtgcagcctgggtacggcaagcccggcggcaccaccgtcggcgtc 30584669

                  
Query: 410      gg 411
                ||
Sbjct: 30584670 gg 30584671



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>dbj|AP003309.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0036G09
          Length = 124118

 Score =  159 bits (80), Expect = 9e-36
 Identities = 153/176 (86%), Gaps = 1/176 (0%)
 Strand = Plus / Plus

                                                                         
Query: 256   cggaggcacgtcggtgaacgtcggctcgggcggcgtccatgttgacgcgggccatgggat 315
             |||||||||||||||||||||||||  ||||||||||||||| |||||||| || || | 
Sbjct: 66982 cggaggcacgtcggtgaacgtcggcgggggcggcgtccatgtcgacgcggggcacggcaa 67041

                                                                         
Query: 316   gcctgggggcacgacggtcgatgtgggcaagggtggcgtcggcgtcaacgtgaagcctgg 375
             ||| || ||||| || || ||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 67042 gcccggcggcacaaccgttgatgtaggcaagggtggcgtcggcgtgaacgtgaagcctgg 67101

                                                                     
Query: 376   cagcgccaagcccggcgggactacggtcggcgtc-ggcagggcggcgtgggtgtca 430
                || |||||||||||| || |||||||||||| || ||||||||||||| ||||
Sbjct: 67102 ttacggcaagcccggcggcaccacggtcggcgtcgggaagggcggcgtgggagtca 67157



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                         
Query: 145   gatcgcgtcggtaggaagccatgcagctcgtgctccggggcaatactgggagtctgctct 204
             |||||| || |||||||||||||| |||||  |||||| |||||||||| | || |||||
Sbjct: 66402 gatcgcttcagtaggaagccatgccgctcggactccggagcaatactggaaatcagctct 66461

                                              
Query: 205   tcccaacactcccatgccaagctccctctctca 237
             ||||||| ||||||| || ||||| ||||||||
Sbjct: 66462 tcccaactctcccatcccgagctcgctctctca 66494



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 344   aagggtggcgtcggcgtcaacgtgaagcc 372
             ||||| |||||||||||||||||||||||
Sbjct: 67346 aagggcggcgtcggcgtcaacgtgaagcc 67374



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                         
Query: 344   aagggtggcgtcggcgtcaacgtgaagcctggcagcgccaagcccggcgggactacggtc 403
             ||||| ||||||||||| |||||| |||| |||  || ||||||||| || || || |||
Sbjct: 67277 aagggcggcgtcggcgtgaacgtgcagccaggctacggcaagcccgggggcaccaccgtc 67336

                     
Query: 404   ggcgtcgg 411
             ||||||||
Sbjct: 67337 ggcgtcgg 67344



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                         
Query: 350   ggcgtcggcgtcaacgtgaagcctggcagcgccaagcccggcgggactacggtcggcgtc 409
             ||||| ||||| |||||| |||||||   || |||||||||||| || || |||||||||
Sbjct: 67214 ggcgtgggcgtgaacgtgcagcctgggtacggcaagcccggcggcaccaccgtcggcgtc 67273

               
Query: 410   gg 411
             ||
Sbjct: 67274 gg 67275



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>dbj|AP003560.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1060H01
          Length = 157987

 Score =  159 bits (80), Expect = 9e-36
 Identities = 153/176 (86%), Gaps = 1/176 (0%)
 Strand = Plus / Plus

                                                                         
Query: 256   cggaggcacgtcggtgaacgtcggctcgggcggcgtccatgttgacgcgggccatgggat 315
             |||||||||||||||||||||||||  ||||||||||||||| |||||||| || || | 
Sbjct: 26655 cggaggcacgtcggtgaacgtcggcgggggcggcgtccatgtcgacgcggggcacggcaa 26714

                                                                         
Query: 316   gcctgggggcacgacggtcgatgtgggcaagggtggcgtcggcgtcaacgtgaagcctgg 375
             ||| || ||||| || || ||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 26715 gcccggcggcacaaccgttgatgtaggcaagggtggcgtcggcgtgaacgtgaagcctgg 26774

                                                                     
Query: 376   cagcgccaagcccggcgggactacggtcggcgtc-ggcagggcggcgtgggtgtca 430
                || |||||||||||| || |||||||||||| || ||||||||||||| ||||
Sbjct: 26775 ttacggcaagcccggcggcaccacggtcggcgtcgggaagggcggcgtgggagtca 26830



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                         
Query: 145   gatcgcgtcggtaggaagccatgcagctcgtgctccggggcaatactgggagtctgctct 204
             |||||| || |||||||||||||| |||||  |||||| |||||||||| | || |||||
Sbjct: 26075 gatcgcttcagtaggaagccatgccgctcggactccggagcaatactggaaatcagctct 26134

                                              
Query: 205   tcccaacactcccatgccaagctccctctctca 237
             ||||||| ||||||| || ||||| ||||||||
Sbjct: 26135 tcccaactctcccatcccgagctcgctctctca 26167



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 344   aagggtggcgtcggcgtcaacgtgaagcc 372
             ||||| |||||||||||||||||||||||
Sbjct: 27019 aagggcggcgtcggcgtcaacgtgaagcc 27047



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 57/68 (83%)
 Strand = Plus / Plus

                                                                         
Query: 344   aagggtggcgtcggcgtcaacgtgaagcctggcagcgccaagcccggcgggactacggtc 403
             ||||| ||||||||||| |||||| |||| |||  || ||||||||| || || || |||
Sbjct: 26950 aagggcggcgtcggcgtgaacgtgcagccaggctacggcaagcccgggggcaccaccgtc 27009

                     
Query: 404   ggcgtcgg 411
             ||||||||
Sbjct: 27010 ggcgtcgg 27017



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 52/62 (83%)
 Strand = Plus / Plus

                                                                         
Query: 350   ggcgtcggcgtcaacgtgaagcctggcagcgccaagcccggcgggactacggtcggcgtc 409
             ||||| ||||| |||||| |||||||   || |||||||||||| || || |||||||||
Sbjct: 26887 ggcgtgggcgtgaacgtgcagcctgggtacggcaagcccggcggcaccaccgtcggcgtc 26946

               
Query: 410   gg 411
             ||
Sbjct: 26947 gg 26948



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>emb|AL691513.13| Mouse DNA sequence from clone RP23-451C8 on chromosome X, complete
             sequence
          Length = 121936

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 82    gctgccctctgccctgccctcc 103
             ||||||||||||||||||||||
Sbjct: 19015 gctgccctctgccctgccctcc 19036



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>gb|AC157903.3| Mus musculus chromosome 18, clone RP23-341E18, complete sequence
          Length = 198984

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 87    cctctgccctgccctccatgg 107
             |||||||||||||||||||||
Sbjct: 89203 cctctgccctgccctccatgg 89223



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>gb|AC134581.5| Mus musculus BAC clone RP24-90L20 from chromosome 8, complete sequence
          Length = 201483

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 74     tcctcattgctgccctctgcc 94
              |||||||||||||||||||||
Sbjct: 104523 tcctcattgctgccctctgcc 104503



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>gb|AC163394.4| Mus musculus chromosome 15, clone RP24-241D13, complete sequence
          Length = 154751

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 216   ccatgccaagctccctctctc 236
             |||||||||||||||||||||
Sbjct: 77707 ccatgccaagctccctctctc 77727



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>gb|AC102847.3| Mus musculus, clone RP24-406I1, complete sequence
          Length = 146259

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 216   ccatgccaagctccctctctc 236
             |||||||||||||||||||||
Sbjct: 10116 ccatgccaagctccctctctc 10136



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>gb|AC145332.48| Felis catus clone rp86-207p24, complete sequence
          Length = 165072

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 84    tgccctctgccctgccctcca 104
             |||||||||||||||||||||
Sbjct: 52191 tgccctctgccctgccctcca 52171



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>gb|AC103808.2| Homo sapiens chromosome 18, clone RP11-94B19, complete sequence
          Length = 152722

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 84    tgccctctgccctgccctcca 104
             |||||||||||||||||||||
Sbjct: 22839 tgccctctgccctgccctcca 22859



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>dbj|AK022038.1| Homo sapiens cDNA FLJ11976 fis, clone HEMBB1001253
          Length = 3174

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 81  tgctgccctctgccctgccct 101
           |||||||||||||||||||||
Sbjct: 187 tgctgccctctgccctgccct 167



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>gb|AC102162.6| Mus musculus chromosome 18, clone RP23-419P4, complete sequence
          Length = 194165

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 87    cctctgccctgccctccatgg 107
             |||||||||||||||||||||
Sbjct: 97329 cctctgccctgccctccatgg 97309



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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 348    gtggcgtcggcgtcaacgtga 368
              |||||||||||||||||||||
Sbjct: 150874 gtggcgtcggcgtcaacgtga 150854



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>gb|AC165090.3| Mus musculus BAC clone RP23-95H4 from chromosome 8, complete sequence
          Length = 252334

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 181    ggggcaatactgggagtctg 200
              ||||||||||||||||||||
Sbjct: 156303 ggggcaatactgggagtctg 156322



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>emb|AL162417.23| Human DNA sequence from clone RP11-326L24 on chromosome 9q34.13-34.3
              Contains the GTF3C5 gene for general transcription factor
              IIIC polypeptide 5 63kDa, the CEL gene for carboxyl ester
              lipase (bile salt-stimulated lipase), the CELP gene for
              carboxyl ester lipase pseudogene, the RALGDS gene for ral
              guanine nucleotide dissociation stimulator, the gene for
              Forssman glycolipid synthetase (FS), three novel genes and
              six CpG islands, complete sequence
          Length = 152863

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 81     tgctgccctctgccctgccc 100
              ||||||||||||||||||||
Sbjct: 119706 tgctgccctctgccctgccc 119725



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>emb|BX640424.1| Bordetella parapertussis strain 12822, complete genome; segment 2/14
          Length = 349146

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 82     gctgccctctgccctgccctccat 105
              ||||||||| ||||||||||||||
Sbjct: 328111 gctgccctcggccctgccctccat 328088



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>gb|AC107623.2| Homo sapiens chromosome 3 clone RP11-648C16, complete sequence
          Length = 176901

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    tgccgtcagcttcctcattg 82
             ||||||||||||||||||||
Sbjct: 73263 tgccgtcagcttcctcattg 73244



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>gb|AC096970.2| Homo sapiens chromosome 3 clone RP11-321A23, complete sequence
          Length = 171297

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 63   tgccgtcagcttcctcattg 82
            ||||||||||||||||||||
Sbjct: 5190 tgccgtcagcttcctcattg 5209



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>ref|XM_394171.2| PREDICTED: Apis mellifera similar to Transcription factor collier
           (Transcription factor knot) (LOC410694), mRNA
          Length = 1950

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 398 acggtcggcgtcggcagggc 417
           ||||||||||||||||||||
Sbjct: 70  acggtcggcgtcggcagggc 89



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>gb|AC024560.26| Homo sapiens 3 BAC RP11-496H1 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 164595

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 83     ctgccctctgccctgccctc 102
              ||||||||||||||||||||
Sbjct: 124562 ctgccctctgccctgccctc 124543



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>gb|AC024937.21| Homo sapiens 3 BAC RP11-480A16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 157198

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    ctgccctctgccctgccctc 102
             ||||||||||||||||||||
Sbjct: 60287 ctgccctctgccctgccctc 60306



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 83  ctgccctctgccctgccctc 102
           ||||||||||||||||||||
Sbjct: 771 ctgccctctgccctgccctc 790



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>gb|AC124944.8| Homo sapiens 3 BAC RP11-352G9 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 121914

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 83   ctgccctctgccctgccctc 102
            ||||||||||||||||||||
Sbjct: 1275 ctgccctctgccctgccctc 1256



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>gb|AF333038.2| Streptomyces viridochromogenes Avilamycin A biosynthetic gene cluster,
             complete sequence
          Length = 59816

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 268   ggtgaacgtcggctcgggcg 287
             ||||||||||||||||||||
Sbjct: 42394 ggtgaacgtcggctcgggcg 42413



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>gb|AC002319.1|AC002319 Homo sapiens chromosome 9q34, clone 70C11, complete sequence
          Length = 46305

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    tgctgccctctgccctgccc 100
             ||||||||||||||||||||
Sbjct: 44281 tgctgccctctgccctgccc 44262



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>gb|AC131680.4| Mus musculus BAC clone RP23-346F8 from 8, complete sequence
          Length = 198162

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 181    ggggcaatactgggagtctg 200
              ||||||||||||||||||||
Sbjct: 160771 ggggcaatactgggagtctg 160752



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>gb|AC001643.1|AC001643 Genomic sequence from Human 9q34, complete sequence
          Length = 40203

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    tgctgccctctgccctgccc 100
             ||||||||||||||||||||
Sbjct: 20582 tgctgccctctgccctgccc 20601


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,817,454
Number of Sequences: 3902068
Number of extensions: 2817454
Number of successful extensions: 62693
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62539
Number of HSP's gapped (non-prelim): 140
length of query: 430
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 408
effective length of database: 17,147,199,772
effective search space: 6996057506976
effective search space used: 6996057506976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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