ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet64c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK104260.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 5e-28
2dbj|AK104000.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 5e-28
3dbj|AK072802.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 5e-28
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
5dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
6dbj|AP005425.3| Oryza sativa (japonica cultivar-group) genomic D... 86 1e-13
7ref|XM_467895.1| Oryza sativa (japonica cultivar-group), mRNA 72 1e-09
8dbj|AK071537.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
9dbj|AK065677.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
10dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
11dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic D... 52 0.001
12dbj|AK106768.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
13gb|CP000110.1| Synechococcus sp. CC9605, complete genome 48 0.021
14ref|XM_473394.1| Oryza sativa (japonica cultivar-group), predic... 46 0.082
15emb|AL607006.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 46 0.082
16dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.082
17dbj|AK119259.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.082
18gb|AC153727.6| Mus musculus BAC clone RP23-354L15 from chromosom... 42 1.3
19ref|XM_470034.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.3
20gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 1.3
21gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genom... 42 1.3
22dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
23gb|AF263912.1|AF263912 Streptomyces noursei ATCC 11455 nystatin ... 42 1.3
24dbj|AK068398.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
25ref|XM_467093.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.1
26ref|XM_464749.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.1
27gb|AE012484.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 5.1
28gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 5.1
29dbj|AK021402.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN f... 40 5.1
30gb|AC153587.2| Mus musculus 6 BAC RP23-361L1 (Roswell Park Cance... 40 5.1
31dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
32dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.1
33dbj|AK109849.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.1
34emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 5.1
35gb|AY105433.1| Zea mays PCO099019 mRNA sequence 40 5.1
36gb|AF093537.1|AF093537 Zea mays blue copper protein mRNA, partia... 40 5.1
37emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chro... 40 5.1

>dbj|AK104260.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-G10, full
           insert sequence
          Length = 886

 Score =  133 bits (67), Expect = 5e-28
 Identities = 129/150 (86%)
 Strand = Plus / Plus

                                                                       
Query: 191 aagtacaccgtcggcgacagctccggctggaccaccggggcggactacaccacctgggcc 250
           |||||||||||||||||||  ||||||||| | |  |||||||| |||||||||||||||
Sbjct: 143 aagtacaccgtcggcgacacgtccggctgggcgatgggggcggattacaccacctgggcc 202

                                                                       
Query: 251 agcgacaagaagatcaaagtcggcgactccctcgtgttcaactacgccggcggngcgcac 310
           |||||||||||  ||||| | |||||  |||||||||||||||||||||| || ||||||
Sbjct: 203 agcgacaagaaattcaaaatgggcgataccctcgtgttcaactacgccggtggggcgcac 262

                                         
Query: 311 aacgtggcggaggtgagcgcggcggactac 340
              ||||  ||||||||||| |||||||||
Sbjct: 263 tcggtggatgaggtgagcgcagcggactac 292



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>dbj|AK104000.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-E04, full
           insert sequence
          Length = 848

 Score =  133 bits (67), Expect = 5e-28
 Identities = 129/150 (86%)
 Strand = Plus / Plus

                                                                       
Query: 191 aagtacaccgtcggcgacagctccggctggaccaccggggcggactacaccacctgggcc 250
           |||||||||||||||||||  ||||||||| | |  |||||||| |||||||||||||||
Sbjct: 143 aagtacaccgtcggcgacacgtccggctgggcgatgggggcggattacaccacctgggcc 202

                                                                       
Query: 251 agcgacaagaagatcaaagtcggcgactccctcgtgttcaactacgccggcggngcgcac 310
           |||||||||||  ||||| | |||||  |||||||||||||||||||||| || ||||||
Sbjct: 203 agcgacaagaaattcaaaatgggcgataccctcgtgttcaactacgccggtggggcgcac 262

                                         
Query: 311 aacgtggcggaggtgagcgcggcggactac 340
              ||||  ||||||||||| |||||||||
Sbjct: 263 tcggtggatgaggtgagcgcagcggactac 292



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>dbj|AK072802.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135E05, full
           insert sequence
          Length = 889

 Score =  133 bits (67), Expect = 5e-28
 Identities = 129/150 (86%)
 Strand = Plus / Plus

                                                                       
Query: 191 aagtacaccgtcggcgacagctccggctggaccaccggggcggactacaccacctgggcc 250
           |||||||||||||||||||  ||||||||| | |  |||||||| |||||||||||||||
Sbjct: 146 aagtacaccgtcggcgacacgtccggctgggcgatgggggcggattacaccacctgggcc 205

                                                                       
Query: 251 agcgacaagaagatcaaagtcggcgactccctcgtgttcaactacgccggcggngcgcac 310
           |||||||||||  ||||| | |||||  |||||||||||||||||||||| || ||||||
Sbjct: 206 agcgacaagaaattcaaaatgggcgataccctcgtgttcaactacgccggtggggcgcac 265

                                         
Query: 311 aacgtggcggaggtgagcgcggcggactac 340
              ||||  ||||||||||| |||||||||
Sbjct: 266 tcggtggatgaggtgagcgcagcggactac 295



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                           
Query: 191     aagtacaccgtcggcgacagctccggctggaccaccggggcggactacaccacctgggcc 250
               |||||||||||||||||||  ||||||||| | |  |||||||| |||||||||||||||
Sbjct: 6097820 aagtacaccgtcggcgacacgtccggctgggcgatgggggcggattacaccacctgggcc 6097879

                          
Query: 251     agcgacaagaa 261
               |||||||||||
Sbjct: 6097880 agcgacaagaa 6097890



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                        
Query: 284     gtgttcaactacgccggcggngcgcacaacgtggcggaggtgagcgcggcggactac 340
               ||||||||||||||||| || ||||||   ||||  ||||||||||| |||||||||
Sbjct: 6098297 gtgttcaactacgccggtggggcgcactcggtggatgaggtgagcgcagcggactac 6098353



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>dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0436F11
          Length = 165550

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                         
Query: 191   aagtacaccgtcggcgacagctccggctggaccaccggggcggactacaccacctgggcc 250
             |||||||||||||||||||  ||||||||| | |  |||||||| |||||||||||||||
Sbjct: 11639 aagtacaccgtcggcgacacgtccggctgggcgatgggggcggattacaccacctgggcc 11698

                        
Query: 251   agcgacaagaa 261
             |||||||||||
Sbjct: 11699 agcgacaagaa 11709



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                      
Query: 284   gtgttcaactacgccggcggngcgcacaacgtggcggaggtgagcgcggcggactac 340
             ||||||||||||||||| || ||||||   ||||  ||||||||||| |||||||||
Sbjct: 12116 gtgttcaactacgccggtggggcgcactcggtggatgaggtgagcgcagcggactac 12172



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>dbj|AP005425.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0644A02
          Length = 144954

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 64/71 (90%)
 Strand = Plus / Plus

                                                                          
Query: 191    aagtacaccgtcggcgacagctccggctggaccaccggggcggactacaccacctgggcc 250
              |||||||||||||||||||  ||||||||| | |  |||||||| |||||||||||||||
Sbjct: 102319 aagtacaccgtcggcgacacgtccggctgggcgatgggggcggattacaccacctgggcc 102378

                         
Query: 251    agcgacaagaa 261
              |||||||||||
Sbjct: 102379 agcgacaagaa 102389



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                       
Query: 284    gtgttcaactacgccggcggngcgcacaacgtggcggaggtgagcgcggcggactac 340
              ||||||||||||||||| || ||||||   ||||  ||||||||||| |||||||||
Sbjct: 102796 gtgttcaactacgccggtggggcgcactcggtggatgaggtgagcgcagcggactac 102852



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>ref|XM_467895.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1055

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 139/174 (79%)
 Strand = Plus / Plus

                                                                       
Query: 194 tacaccgtcggcgacagctccggctggaccaccggggcggactacaccacctgggccagc 253
           |||||||||||||||   ||||| ||||| | ||| |  || ||||||| ||||||| ||
Sbjct: 262 tacaccgtcggcgacgcgtccgggtggacgatcggcgttgattacaccagctgggccggc 321

                                                                       
Query: 254 gacaagaagatcaaagtcggcgactccctcgtgttcaactacgccggcggngcgcacaac 313
             ||||  | |||||||||| |||  |||||||||||| |||||  |||| |||||||  
Sbjct: 322 tccaagtcgttcaaagtcggagacagcctcgtgttcaagtacgcgagcggagcgcacacg 381

                                                                 
Query: 314 gtggcggaggtgagcgcggcggactacncgtcgtgctccgccgccaacgcgctc 367
           |||| |||||||||||||||||  |||  | ||||| | || ||||||||||||
Sbjct: 382 gtggtggaggtgagcgcggcggggtacctggcgtgcgcggcggccaacgcgctc 435



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>dbj|AK071537.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023100A12, full
           insert sequence
          Length = 1055

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 139/174 (79%)
 Strand = Plus / Plus

                                                                       
Query: 194 tacaccgtcggcgacagctccggctggaccaccggggcggactacaccacctgggccagc 253
           |||||||||||||||   ||||| ||||| | ||| |  || ||||||| ||||||| ||
Sbjct: 262 tacaccgtcggcgacgcgtccgggtggacgatcggcgttgattacaccagctgggccggc 321

                                                                       
Query: 254 gacaagaagatcaaagtcggcgactccctcgtgttcaactacgccggcggngcgcacaac 313
             ||||  | |||||||||| |||  |||||||||||| |||||  |||| |||||||  
Sbjct: 322 tccaagtcgttcaaagtcggagacagcctcgtgttcaagtacgcgagcggagcgcacacg 381

                                                                 
Query: 314 gtggcggaggtgagcgcggcggactacncgtcgtgctccgccgccaacgcgctc 367
           |||| |||||||||||||||||  |||  | ||||| | || ||||||||||||
Sbjct: 382 gtggtggaggtgagcgcggcggggtacctggcgtgcgcggcggccaacgcgctc 435



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>dbj|AK065677.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035N16, full
            insert sequence
          Length = 3828

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                     
Query: 191  aagtacaccgtcggcgacagctccggctggaccaccggggcggactacaccacctgg 247
            |||||||||||||||||||  ||||||||| | |  |||||||| ||||||||||||
Sbjct: 2458 aagtacaccgtcggcgacacgtccggctgggcgatgggggcggattacaccacctgg 2402



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 69/84 (82%)
 Strand = Plus / Minus

                                                                            
Query: 284      gtgttcaactacgccggcggngcgcacaacgtggcggaggtgagcgcggcggactacncg 343
                |||||||| |||||  |||| |||||||  |||| |||||||||||||||||  |||  |
Sbjct: 31971127 gtgttcaagtacgcgagcggagcgcacacggtggtggaggtgagcgcggcggggtacctg 31971068

                                        
Query: 344      tcgtgctccgccgccaacgcgctc 367
                 ||||| | || ||||||||||||
Sbjct: 31971067 gcgtgcgcggcggccaacgcgctc 31971044



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 194      tacaccgtcggcgacagctccggctgga 221
                ||||||||||||||||  ||||||||||
Sbjct: 26363822 tacaccgtcggcgacacatccggctgga 26363795



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 198     ccgtcggcgacagctccggc 217
               ||||||||||||||||||||
Sbjct: 7097248 ccgtcggcgacagctccggc 7097267



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>dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0471A11
          Length = 157740

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 69/84 (82%)
 Strand = Plus / Minus

                                                                          
Query: 284    gtgttcaactacgccggcggngcgcacaacgtggcggaggtgagcgcggcggactacncg 343
              |||||||| |||||  |||| |||||||  |||| |||||||||||||||||  |||  |
Sbjct: 132128 gtgttcaagtacgcgagcggagcgcacacggtggtggaggtgagcgcggcggggtacctg 132069

                                      
Query: 344    tcgtgctccgccgccaacgcgctc 367
               ||||| | || ||||||||||||
Sbjct: 132068 gcgtgcgcggcggccaacgcgctc 132045



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>dbj|AK106768.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-F05, full
            insert sequence
          Length = 1448

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                     
Query: 284  gtgttcaactacgccggcggngcgcacaacgtggcggaggtgagcgcggcggactac 340
            ||||||||||||||||| || ||||||   ||||  ||||||||||| |||||||||
Sbjct: 1225 gtgttcaactacgccggtggggcgcactcggtggatgaggtgagcgcagcggactac 1169



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>gb|CP000110.1| Synechococcus sp. CC9605, complete genome
          Length = 2510659

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 178    ggcgtccgcggcgaagtacaccgt 201
              ||||||||||||||||||||||||
Sbjct: 961937 ggcgtccgcggcgaagtacaccgt 961960



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>ref|XM_473394.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 546

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                      
Query: 194 tacaccgtcggcgacagctccggctggaccaccggggcggactacaccacctgggccag 252
           |||||||||||||||   || || ||||| ||||| | |||||||||| ||||||||||
Sbjct: 76  tacaccgtcggcgactcgtcggggtggactaccggtgtggactacaccgcctgggccag 134



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>emb|AL607006.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21,
             complete sequence
          Length = 141787

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                        
Query: 194   tacaccgtcggcgacagctccggctggaccaccggggcggactacaccacctgggccag 252
             |||||||||||||||   || || ||||| ||||| | |||||||||| ||||||||||
Sbjct: 44399 tacaccgtcggcgactcgtcggggtggactaccggtgtggactacaccgcctgggccag 44341



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                           
Query: 194      tacaccgtcggcgacagctccggctggaccaccggggcggactacaccacctgggccag 252
                |||||||||||||||   || || ||||| ||||| | |||||||||| ||||||||||
Sbjct: 27308471 tacaccgtcggcgactcgtcggggtggactaccggtgtggactacaccgcctgggccag 27308413



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>dbj|AK119259.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-125-H05, full
           insert sequence
          Length = 827

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 50/59 (84%)
 Strand = Plus / Plus

                                                                      
Query: 194 tacaccgtcggcgacagctccggctggaccaccggggcggactacaccacctgggccag 252
           |||||||||||||||   || || ||||| ||||| | |||||||||| ||||||||||
Sbjct: 157 tacaccgtcggcgactcgtcggggtggactaccggtgtggactacaccgcctgggccag 215



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>gb|AC153727.6| Mus musculus BAC clone RP23-354L15 from chromosome 12, complete
             sequence
          Length = 202733

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 38    actgttttcacagacgctctgctct 62
             |||||||||||||| ||||||||||
Sbjct: 42504 actgttttcacagaggctctgctct 42480



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>ref|XM_470034.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 591

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 200 gtcggcgacagctccggctggacca 224
           |||||||||| ||||||||||||||
Sbjct: 76  gtcggcgacacctccggctggacca 100



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 200      gtcggcgacagctccggctggacca 224
                |||||||||| ||||||||||||||
Sbjct: 33449069 gtcggcgacacctccggctggacca 33449093



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>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete
             sequence
          Length = 154555

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 200   gtcggcgacagctccggctggacca 224
             |||||||||| ||||||||||||||
Sbjct: 49042 gtcggcgacacctccggctggacca 49018



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 200      gtcggcgacagctccggctggacca 224
                |||||||||| ||||||||||||||
Sbjct: 33539579 gtcggcgacacctccggctggacca 33539603



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>gb|AF263912.1|AF263912 Streptomyces noursei ATCC 11455 nystatin biosynthetic gene cluster,
              complete sequence
          Length = 123580

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 314    gtggcggaggtgagcgcggcg 334
              |||||||||||||||||||||
Sbjct: 114903 gtggcggaggtgagcgcggcg 114883



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>dbj|AK068398.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151L03, full
           insert sequence
          Length = 1100

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 200 gtcggcgacagctccggctggacca 224
           |||||||||| ||||||||||||||
Sbjct: 445 gtcggcgacacctccggctggacca 469



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 200 gtcggcgacagctccggctggacca 224
           |||||||||| ||||||||||||||
Sbjct: 195 gtcggcgacacctccggctggacca 219



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>ref|XM_467093.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 609

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 194 tacaccgtcggcgacagctccggctgga 221
           ||||||||||||||||  ||||||||||
Sbjct: 82  tacaccgtcggcgacacatccggctgga 109



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>ref|XM_464749.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2148

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 198 ccgtcggcgacagctccggc 217
           ||||||||||||||||||||
Sbjct: 686 ccgtcggcgacagctccggc 705



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>gb|AE012484.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 392 of
             460 of the complete genome
          Length = 13278

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 314   gtggcggaggtgagcgcggc 333
             ||||||||||||||||||||
Sbjct: 13007 gtggcggaggtgagcgcggc 13026



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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 314     gtggcggaggtgagcgcggc 333
               ||||||||||||||||||||
Sbjct: 4395051 gtggcggaggtgagcgcggc 4395070



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>dbj|AK021402.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched
           library, clone:E130202I16 product:SIMILAR TO SOLUTE
           CARRIER FAMILY 6 (NEUROTRANSMITTER TRANSPORTER, GABA),
           MEMBER 13 homolog [Homo sapiens], full insert sequence
          Length = 1020

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 316 ggcggaggtgagcgcggcgg 335
           ||||||||||||||||||||
Sbjct: 94  ggcggaggtgagcgcggcgg 113



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>gb|AC153587.2| Mus musculus 6 BAC RP23-361L1 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 232002

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 316    ggcggaggtgagcgcggcgg 335
              ||||||||||||||||||||
Sbjct: 127147 ggcggaggtgagcgcggcgg 127166



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>dbj|AP005003.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0495C02
          Length = 151467

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 198    ccgtcggcgacagctccggc 217
              ||||||||||||||||||||
Sbjct: 100667 ccgtcggcgacagctccggc 100686



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>dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:P0491E01
          Length = 136150

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 194   tacaccgtcggcgacagctccggctgga 221
             ||||||||||||||||  ||||||||||
Sbjct: 96174 tacaccgtcggcgacacatccggctgga 96147



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>dbj|AK109849.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-F06, full
           insert sequence
          Length = 2145

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 198 ccgtcggcgacagctccggc 217
           ||||||||||||||||||||
Sbjct: 686 ccgtcggcgacagctccggc 705



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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 237     acaccacctgggccagcgac 256
               ||||||||||||||||||||
Sbjct: 1017119 acaccacctgggccagcgac 1017138



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>gb|AY105433.1| Zea mays PCO099019 mRNA sequence
          Length = 843

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 347 tgctccgccgccaacgcgctcagc 370
           ||||||| ||||||||||||||||
Sbjct: 332 tgctccggcgccaacgcgctcagc 355



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>gb|AF093537.1|AF093537 Zea mays blue copper protein mRNA, partial cds
          Length = 325

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 347 tgctccgccgccaacgcgctcagc 370
           ||||||| ||||||||||||||||
Sbjct: 232 tgctccggcgccaacgcgctcagc 255



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>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 194   tacaccgtcggcgacagctccggctgga 221
             ||||||||||||||||  ||||||||||
Sbjct: 87035 tacaccgtcggcgacacatccggctgga 87008


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,146,340
Number of Sequences: 3902068
Number of extensions: 2146340
Number of successful extensions: 38804
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 38439
Number of HSP's gapped (non-prelim): 371
length of query: 380
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 358
effective length of database: 17,147,199,772
effective search space: 6138697518376
effective search space used: 6138697518376
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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