ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet63h09 |
|---|---|
| Clone Library Name | barley_pub |
>CHL1_ARATH (Q05085) Nitrate/chlorate transporter| Length = 590 Score = 66.6 bits (161), Expect = 3e-11 Identities = 35/107 (32%), Positives = 55/107 (51%) Frame = +3 Query: 99 DFRGRPVDTGRHGGVRASMFIYIMVWLGXXXXXXXXXXXXSYLRGTMNMDVAAAATTSTN 278 DF+GRP D + GG ++ I + + +YL GTM++ A AA T TN Sbjct: 17 DFQGRPADRSKTGGWASAAMILCIEAVERLTTLGIGVNLVTYLTGTMHLGNATAANTVTN 76 Query: 279 FLATLQMFTIPAAFLADSYIKRFYTVLIFAPVEILGYILLAVQHTSP 419 FL T M + F+AD+++ R+ T+ IFA ++ G +L + P Sbjct: 77 FLGTSFMLCLLGGFIADTFLGRYLTIAIFAAIQATGVSILTLSTIIP 123
>PTR2_ARATH (P46032) Peptide transporter PTR2 (Histidine-transporting protein)| Length = 585 Score = 41.2 bits (95), Expect = 0.001 Identities = 28/110 (25%), Positives = 46/110 (41%) Frame = +3 Query: 90 GLVDFRGRPVDTGRHGGVRASMFIYIMVWLGXXXXXXXXXXXXSYLRGTMNMDVAAAATT 269 G VDF G P + G +A FI +YL ++ +AAT Sbjct: 28 GSVDFNGNPPLKEKTGNWKACPFILGNECCERLAYYGIAGNLITYLTTKLHQGNVSAATN 87 Query: 270 STNFLATLQMFTIPAAFLADSYIKRFYTVLIFAPVEILGYILLAVQHTSP 419 T + T + + A LAD+Y R++T+ F+ + +G L + + P Sbjct: 88 VTTWQGTCYLTPLIGAVLADAYWGRYWTIACFSGIYFIGMSALTLSASVP 137
>WNK1_RAT (Q9JIH7) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1) (Protein| kinase with no lysine 1) (Protein kinase, lysine-deficient 1) Length = 2126 Score = 30.8 bits (68), Expect = 1.6 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 8/56 (14%) Frame = -3 Query: 149 SSDSSMPAGVNRPPPEI--------HEPERAAHDHAAGLTLSFPTSGSSKSRSCAV 6 +S S+P G + P + H ++A+H AGL LSF SS S AV Sbjct: 1245 ASQPSLPLGSSTSAPTLAETVVVSAHSLDKASHSSTAGLGLSFCAPSSSSSSGTAV 1300
>TNNT3_RABIT (P02641) Troponin T, fast skeletal muscle (TnTf) (Fast skeletal| muscle troponin T) (fTnT) Length = 278 Score = 30.8 bits (68), Expect = 1.6 Identities = 12/36 (33%), Positives = 18/36 (50%) Frame = -3 Query: 179 EPYHDVNEHGSSDSSMPAGVNRPPPEIHEPERAAHD 72 E ++ E ++ PA V+ P PE+H PE D Sbjct: 9 EEQYEEEEEAQEEAPSPAEVHEPAPEVHVPEEVHED 44
>WNK1_MOUSE (P83741) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1) (Protein| kinase with no lysine 1) (Protein kinase, lysine-deficient 1) Length = 2377 Score = 30.8 bits (68), Expect = 1.6 Identities = 18/48 (37%), Positives = 22/48 (45%) Frame = -3 Query: 149 SSDSSMPAGVNRPPPEIHEPERAAHDHAAGLTLSFPTSGSSKSRSCAV 6 SS +S P H ++A+H AGL LSF SS S AV Sbjct: 1504 SSSTSAPTLAETMVVSAHSLDKASHSSTAGLGLSFCAPSSSSSSGTAV 1551
>SASH1_HUMAN (O94885) SAM and SH3 domain-containing protein 1 (Proline-glutamate| repeat-containing protein) Length = 1247 Score = 30.4 bits (67), Expect = 2.0 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = -1 Query: 136 PCLPVSTGLPLKSTSPNELPMTTLLVSPSLSRPPG 32 PCLPV G P TSP++ P L P + PG Sbjct: 1017 PCLPVKRGSPASPTSPSDCP-PALAPRPLSGQAPG 1050
>HOX3_BRAFL (P50901) Homeobox protein HOX3| Length = 411 Score = 30.0 bits (66), Expect = 2.7 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%) Frame = -3 Query: 152 GSSDSSMPAGVNRPPPEI-HEPERAAHDHAAGLTLSFPTS 36 GS + PA PPP + H A H+ GLT+S P S Sbjct: 250 GSLQQTQPAYSQYPPPHLNHSLPHQAPPHSVGLTMSGPVS 289
>CX56_CHICK (P29415) Gap junction Cx56 protein (Connexin-56)| Length = 510 Score = 29.6 bits (65), Expect = 3.5 Identities = 19/47 (40%), Positives = 23/47 (48%) Frame = -3 Query: 149 SSDSSMPAGVNRPPPEIHEPERAAHDHAAGLTLSFPTSGSSKSRSCA 9 S+ SS P+ V P PE EP AG ++ SGSS S S A Sbjct: 406 SAGSSTPSSVRHPLPEQEEPLEQLLPLPAGPPITTTNSGSSTSLSGA 452
>T2R05_MOUSE (Q9JKT4) Taste receptor type 2 member 105 (T2R105) (T2R5) (T2R9)| Length = 300 Score = 29.6 bits (65), Expect = 3.5 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%) Frame = +3 Query: 282 LATLQMFTIPAAFLADSYIKRFYTVLIFAP--VEILGYILLAVQHTSPRFTASM 437 LAT ++F + L D+Y K FY F+ +EI+ YI + V H + F S+ Sbjct: 51 LATSRIFIVWLLTL-DAYAKLFYPSKYFSSSLIEIISYIWMTVNHLTVWFATSL 103
>STIP_SOYBN (Q43468) Heat shock protein STI (Stress-inducible protein) (GmSTI)| Length = 569 Score = 29.3 bits (64), Expect = 4.5 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%) Frame = -3 Query: 176 PYHDVNEHGSSDS-SMPAGVNRPPPEIHEPERA 81 P HD N+H + D S V++P PE HEPE A Sbjct: 190 PNHDENDHDADDDVSEDEVVSQPEPE-HEPEAA 221
>DNL1_XENLA (P51892) DNA ligase 1 (EC 6.5.1.1) (DNA ligase I)| (Polydeoxyribonucleotide synthase [ATP] 1) Length = 1070 Score = 29.3 bits (64), Expect = 4.5 Identities = 12/28 (42%), Positives = 18/28 (64%) Frame = -1 Query: 118 TGLPLKSTSPNELPMTTLLVSPSLSRPP 35 +G+P + T+ +LP L +SPS S PP Sbjct: 181 SGIPKRKTARKQLPKRKLEISPSESNPP 208
>UAS3_DROME (Q9VCE9) Protein UBASH3A homolog| Length = 751 Score = 28.9 bits (63), Expect = 5.9 Identities = 11/34 (32%), Positives = 21/34 (61%) Frame = -1 Query: 136 PCLPVSTGLPLKSTSPNELPMTTLLVSPSLSRPP 35 P + ++T + STS ++ P+ +LV P ++PP Sbjct: 432 PTIEITTNMSSSSTSMSKQPVDEILVEPPAAQPP 465
>S15A1_RAT (P51574) Oligopeptide transporter, small intestine isoform (Peptide| transporter 1) (Intestinal H(+)/peptide cotransporter) (Solute carrier family 15 member 1) (Proton-coupled dipeptide cotransporter) Length = 710 Score = 28.9 bits (63), Expect = 5.9 Identities = 15/61 (24%), Positives = 30/61 (49%) Frame = +3 Query: 222 YLRGTMNMDVAAAATTSTNFLATLQMFTIPAAFLADSYIKRFYTVLIFAPVEILGYILLA 401 Y R + D + F+A + I A +ADS++ +F T++ + V +G +++ Sbjct: 40 YFRNFLGWDDDLSTAIYHTFVALCYLTPILGALIADSWLGKFKTIVSLSIVYTIGQAVIS 99 Query: 402 V 404 V Sbjct: 100 V 100
>S15A1_MOUSE (Q9JIP7) Oligopeptide transporter, small intestine isoform (Peptide| transporter 1) (Intestinal H(+)/peptide cotransporter) (Solute carrier family 15 member 1) (Proton-coupled dipeptide cotransporter) Length = 709 Score = 28.9 bits (63), Expect = 5.9 Identities = 15/61 (24%), Positives = 30/61 (49%) Frame = +3 Query: 222 YLRGTMNMDVAAAATTSTNFLATLQMFTIPAAFLADSYIKRFYTVLIFAPVEILGYILLA 401 Y R + D + F+A + I A +ADS++ +F T++ + V +G +++ Sbjct: 40 YFRNFLGWDDNLSTAIYHTFVALCYLTPILGALIADSWLGKFKTIVSLSIVYTIGQAVIS 99 Query: 402 V 404 V Sbjct: 100 V 100
>SELPB_BRARE (Q98SV0) Selenoprotein Pb precursor (zSelPb)| Length = 265 Score = 28.5 bits (62), Expect = 7.7 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = -3 Query: 164 VNEHGSSDSSMPAGVNRPPPEIHEPERAAHDH 69 ++E S + PAG N P EP AAH H Sbjct: 187 ISESSDSTKNDPAGENNQRPNSTEPVTAAHHH 218
>PHF2_MOUSE (Q9WTU0) PHD finger protein 2 (GRC5)| Length = 1096 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = -3 Query: 149 SSDSSMPAGVNRPPPEIHEPERAAHDHAAGLTLSFPTSG 33 SS +S PPPE H A H++ A T S +G Sbjct: 1001 SSQASQEGSSPEPPPESHSSSLADHEYTAAGTFSGSQAG 1039
>YKD1_CAEEL (Q03560) Hypothetical protein B0464.2 in chromosome III| Length = 1150 Score = 28.5 bits (62), Expect = 7.7 Identities = 19/60 (31%), Positives = 28/60 (46%) Frame = -3 Query: 431 GGEARGRVLDG*QDVSQNLDRGEYEDGVEALDV*VGEKGRRDGEHLQRGKEVGACGRRGR 252 GG + R DG + V+ + D G Y+ GE+G DGE +R K+ A + R Sbjct: 939 GGGRKRRNDDGDEFVNDSSDAGNYD----------GEEGGEDGERRERRKKDKAAKKASR 988 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,037,668 Number of Sequences: 219361 Number of extensions: 1000404 Number of successful extensions: 3237 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3095 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3236 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
