ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet63h04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464346.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.026
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.026
3dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.026
4dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 46 0.10
5emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 46 0.10
6gb|AC113053.21| Mus musculus chromosome 17, clone RP23-250J2, co... 44 0.41
7gb|AE005958.1| Caulobacter crescentus CB15 section 284 of 359 of... 44 0.41
8gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.41
9emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 42 1.6
10emb|AL356579.24| Human DNA sequence from clone RP11-593A16 on ch... 42 1.6
11emb|CR376751.15| Zebrafish DNA sequence from clone CH211-220M6 i... 42 1.6
12gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 42 1.6
13dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
14dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
15dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
16dbj|AP003849.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
17dbj|AK105559.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
18gb|AC160539.11| Mus musculus chromosome 15, clone RP24-163H9, co... 42 1.6
19gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
20emb|AL954156.3|CNS08CCU Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.6
21ref|NM_191605.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.4
22gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 6.4
23gb|AC158791.4| Mus musculus chromosome 1, clone RP23-247C6, comp... 40 6.4
24gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 6.4
25ref|NM_022987.1| Mus musculus zinc finger protein of the cerebel... 40 6.4
26emb|BX927062.11| Zebrafish DNA sequence from clone CH211-227N20 ... 40 6.4
27gb|AC105325.11| Mus musculus chromosome 1, clone RP24-455G23, co... 40 6.4
28gb|AC112491.4| Homo sapiens 3 BAC RP11-3P17 (Roswell Park Cancer... 40 6.4
29emb|BX842582.1| Mycobacterium tuberculosis H37Rv complete genome... 40 6.4
30emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete ... 40 6.4
31emb|BX640433.1| Bordetella parapertussis strain 12822, complete ... 40 6.4
32gb|AC154683.2| Mus musculus BAC clone RP23-142O4 from chromosome... 40 6.4
33emb|BX640413.1| Bordetella pertussis strain Tohama I, complete g... 40 6.4
34emb|BX569691.1| Synechococcus sp. WH8102 complete genome; segmen... 40 6.4
35emb|BX248345.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 6.4
36emb|AJ561198.1|NSP561198 Actinomadura sp. ATCC 39727 gene cluste... 40 6.4
37gb|AC010057.7| Drosophila melanogaster 3L BAC RP98-26C18 (Roswel... 40 6.4
38gb|AE005799.1| Caulobacter crescentus CB15 section 125 of 359 of... 40 6.4
39gb|DQ418782.1| Hepatitis C virus isolate 01-09 polyprotein gene,... 40 6.4
40gb|AE011996.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 6.4
41gb|AE011802.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 6.4
42gb|AE011801.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 6.4
43gb|AE011710.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 6.4
44dbj|AK142777.1| Mus musculus 15 days embryo head cDNA, RIKEN ful... 40 6.4
45ref|NM_172637.1| Mus musculus HECT domain containing 2 (Hectd2),... 40 6.4
46ref|XM_687648.1| PREDICTED: Danio rerio hypothetical protein LOC... 40 6.4
47dbj|AB179322.1| Macaca fascicularis testis cDNA clone: QtsA-1756... 40 6.4
48dbj|AK029549.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 6.4
49gb|AC091219.2| Drosophila melanogaster 3L BAC RP98-4C3 (Roswell ... 40 6.4
50dbj|AK041629.1| Mus musculus 3 days neonate thymus cDNA, RIKEN f... 40 6.4
51dbj|AK043646.1| Mus musculus 10 days neonate cortex cDNA, RIKEN ... 40 6.4
52dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
53dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
54gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 6.4
55gb|AY787762.1| Streptomyces filamentosus strain NRRL 11379 dapto... 40 6.4
56dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
57dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.4
58ref|XM_341380.2| PREDICTED: Rattus norvegicus zinc finger protei... 40 6.4
59ref|XM_220050.3| PREDICTED: Rattus norvegicus HECT domain contai... 40 6.4
60dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 6.4
61dbj|AP004680.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.4
62gb|AC144798.4| Mus musculus BAC clone RP24-364A24 from 14, compl... 40 6.4
63dbj|AB114214.1| Mus musculus Zic5 mRNA for zinc finger protein o... 40 6.4
64gb|AE003469.3| Drosophila melanogaster chromosome 3L, section 3 ... 40 6.4
65emb|BX629358.1|CNS09SBU Tetraodon nigroviridis BAC sequence 40 6.4
66gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 6.4
67gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 6.4
68gb|AC130831.4| Mus musculus BAC clone RP24-80P9 from 14, complet... 40 6.4
69dbj|AB193609.1| Streptomyces sp. NRRL 11266 tetronomycin biosynt... 40 6.4
70dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 40 6.4
71dbj|AB042155.1| Mus musculus Opr mRNA, complete cds 40 6.4 
>ref|XM_464346.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1572

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 322 cgccggcgccggtgaaggccccgg 345
           ||||||||||||||||||||||||
Sbjct: 171 cgccggcgccggtgaaggccccgg 148



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 376 cgcccgcgccggtgaaggccccggt 400
           |||| ||||||||||||||||||||
Sbjct: 171 cgccggcgccggtgaaggccccggt 147



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 430 cgccggcaccggtgaaggccccgg 453
           ||||||| ||||||||||||||||
Sbjct: 171 cgccggcgccggtgaaggccccgg 148
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                       
Query: 322     cgccggcgccggtgaaggccccgg 345
               ||||||||||||||||||||||||
Sbjct: 4607249 cgccggcgccggtgaaggccccgg 4607272



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 376     cgcccgcgccggtgaaggccccggt 400
               |||| ||||||||||||||||||||
Sbjct: 4607249 cgccggcgccggtgaaggccccggt 4607273



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 430     cgccggcaccggtgaaggccccgg 453
               ||||||| ||||||||||||||||
Sbjct: 4607249 cgccggcgccggtgaaggccccgg 4607272
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>dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1297_C09
          Length = 163378

 Score = 48.1 bits (24), Expect = 0.026
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                      
Query: 322    cgccggcgccggtgaaggccccgg 345
              ||||||||||||||||||||||||
Sbjct: 142628 cgccggcgccggtgaaggccccgg 142651



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 376    cgcccgcgccggtgaaggccccggt 400
              |||| ||||||||||||||||||||
Sbjct: 142628 cgccggcgccggtgaaggccccggt 142652



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 430    cgccggcaccggtgaaggccccgg 453
              ||||||| ||||||||||||||||
Sbjct: 142628 cgccggcgccggtgaaggccccgg 142651
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 325     cggcgccggtgaaggccccggcc 347
               |||||||||||||||||||||||
Sbjct: 1795053 cggcgccggtgaaggccccggcc 1795075
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 373    ccacgcccgcgccggtgaaggcc 395
              |||||||||||||||||||||||
Sbjct: 972636 ccacgcccgcgccggtgaaggcc 972614
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>gb|AC113053.21| Mus musculus chromosome 17, clone RP23-250J2, complete sequence
          Length = 234124

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 31    tcccactcacactcacactccc 52
             ||||||||||||||||||||||
Sbjct: 49568 tcccactcacactcacactccc 49547
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>gb|AE005958.1| Caulobacter crescentus CB15 section 284 of 359 of the complete genome
          Length = 13027

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 322  cgccggcgccggtgaaggccccggcc 347
            |||||||||||||||||||| |||||
Sbjct: 3447 cgccggcgccggtgaaggcctcggcc 3472
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 443     gaaggccccggccgcccccgcgccga 468
               |||||||||||||||||||| |||||
Sbjct: 3534862 gaaggccccggccgcccccgggccga 3534887
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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 163     cgcccgcggctgcgccggccg 183
               |||||||||||||||||||||
Sbjct: 2339254 cgcccgcggctgcgccggccg 2339234
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>emb|AL356579.24| Human DNA sequence from clone RP11-593A16 on chromosome 6 Contains the 5'
              end of the gene for KIAA1798 protein and a CpG island,
              complete sequence
          Length = 172816

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 446    ggccccggccgcccccgcgcc 466
              |||||||||||||||||||||
Sbjct: 149790 ggccccggccgcccccgcgcc 149770
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>emb|CR376751.15| Zebrafish DNA sequence from clone CH211-220M6 in linkage group 8,
              complete sequence
          Length = 229078

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 372    accacgcccgcgccggtgaag 392
              |||||||||||||||||||||
Sbjct: 199413 accacgcccgcgccggtgaag 199433
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 327     gcgccggtgaaggccccggcc 347
               |||||||||||||||||||||
Sbjct: 1696834 gcgccggtgaaggccccggcc 1696854



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 379     ccgcgccggtgaaggccccgg 399
               |||||||||||||||||||||
Sbjct: 1696832 ccgcgccggtgaaggccccgg 1696852
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 30      ctcccactcacactcacactc 50
               |||||||||||||||||||||
Sbjct: 6461859 ctcccactcacactcacactc 6461839
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 30       ctcccactcacactcacactc 50
                |||||||||||||||||||||
Sbjct: 17719794 ctcccactcacactcacactc 17719814
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>dbj|AP005465.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1136_F08
          Length = 134988

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 30     ctcccactcacactcacactc 50
              |||||||||||||||||||||
Sbjct: 123827 ctcccactcacactcacactc 123847
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>dbj|AP003849.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1753_E03
          Length = 126734

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 30    ctcccactcacactcacactc 50
             |||||||||||||||||||||
Sbjct: 24547 ctcccactcacactcacactc 24567
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>dbj|AK105559.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-B07, full
           insert sequence
          Length = 1417

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 30  ctcccactcacactcacactc 50
           |||||||||||||||||||||
Sbjct: 94  ctcccactcacactcacactc 114
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>gb|AC160539.11| Mus musculus chromosome 15, clone RP24-163H9, complete sequence
          Length = 151529

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 34    cactcacactcacactcccca 54
             |||||||||||||||||||||
Sbjct: 90479 cactcacactcacactcccca 90499
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 30      ctcccactcacactcacactc 50
               |||||||||||||||||||||
Sbjct: 6461734 ctcccactcacactcacactc 6461714
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>emb|AL954156.3|CNS08CCU Oryza sativa chromosome 12, . BAC OSJNBa0096K13 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 138508

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 30    ctcccactcacactcacactc 50
             |||||||||||||||||||||
Sbjct: 14999 ctcccactcacactcacactc 14979
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>ref|NM_191605.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1506

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 314 gccagccacgccggcgccgg 333
           ||||||||||||||||||||
Sbjct: 10  gccagccacgccggcgccgg 29
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 238     cgtctgcaccgccgaccacc 257
               ||||||||||||||||||||
Sbjct: 2062880 cgtctgcaccgccgaccacc 2062899
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>gb|AC158791.4| Mus musculus chromosome 1, clone RP23-247C6, complete sequence
          Length = 218755

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     ccactcacactcacactccc 52
              ||||||||||||||||||||
Sbjct: 186917 ccactcacactcacactccc 186898
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 246     ccgccgaccaccaccccggc 265
               ||||||||||||||||||||
Sbjct: 3557854 ccgccgaccaccaccccggc 3557873
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>ref|NM_022987.1| Mus musculus zinc finger protein of the cerebellum 5 (Zic5), mRNA
          Length = 2434

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 443  gaaggccccggccgcccccg 462
            ||||||||||||||||||||
Sbjct: 1425 gaaggccccggccgcccccg 1406
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>emb|BX927062.11| Zebrafish DNA sequence from clone CH211-227N20 in linkage group 13,
              complete sequence
          Length = 154186

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 29     tctcccactcacactcacactccc 52
              |||| |||||||||||||||||||
Sbjct: 128200 tctcacactcacactcacactccc 128223
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>gb|AC105325.11| Mus musculus chromosome 1, clone RP24-455G23, complete sequence
          Length = 139801

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    ccactcacactcacactccc 52
             ||||||||||||||||||||
Sbjct: 25104 ccactcacactcacactccc 25085
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>gb|AC112491.4| Homo sapiens 3 BAC RP11-3P17 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 154758

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    cccactcacactcacactcc 51
             ||||||||||||||||||||
Sbjct: 92380 cccactcacactcacactcc 92399
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>emb|BX842582.1| Mycobacterium tuberculosis H37Rv complete genome; segment 11/13
          Length = 349563

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   ccgccgaccaccaccccggc 265
             ||||||||||||||||||||
Sbjct: 95286 ccgccgaccaccaccccggc 95305
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>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16
          Length = 347137

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 373    ccacgcccgcgccggtgaag 392
              ||||||||||||||||||||
Sbjct: 255536 ccacgcccgcgccggtgaag 255555
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>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14
          Length = 349305

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 373    ccacgcccgcgccggtgaag 392
              ||||||||||||||||||||
Sbjct: 193244 ccacgcccgcgccggtgaag 193263
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>gb|AC154683.2| Mus musculus BAC clone RP23-142O4 from chromosome 14, complete sequence
          Length = 219067

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 443   gaaggccccggccgcccccg 462
             ||||||||||||||||||||
Sbjct: 28999 gaaggccccggccgcccccg 28980
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>emb|BX640413.1| Bordetella pertussis strain Tohama I, complete genome; segment 3/12
          Length = 349028

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 373    ccacgcccgcgccggtgaag 392
              ||||||||||||||||||||
Sbjct: 160454 ccacgcccgcgccggtgaag 160435
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>emb|BX569691.1| Synechococcus sp. WH8102 complete genome; segment 3/7
          Length = 347365

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 287   ccaggccacccccgctccga 306
             ||||||||||||||||||||
Sbjct: 60113 ccaggccacccccgctccga 60094
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>emb|BX248345.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             12/14
          Length = 308050

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   ccgccgaccaccaccccggc 265
             ||||||||||||||||||||
Sbjct: 74484 ccgccgaccaccaccccggc 74503
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>emb|AJ561198.1|NSP561198 Actinomadura sp. ATCC 39727 gene cluster for biosynthesis of
             glycopeptide antibiotic A40926, strain ATCC 39727
          Length = 89153

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 323   gccggcgccggtgaaggccc 342
             ||||||||||||||||||||
Sbjct: 50752 gccggcgccggtgaaggccc 50771
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>gb|AC010057.7| Drosophila melanogaster 3L BAC RP98-26C18 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 192588

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     ccactcacactcacactccc 52
              ||||||||||||||||||||
Sbjct: 100422 ccactcacactcacactccc 100441
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>gb|AE005799.1| Caulobacter crescentus CB15 section 125 of 359 of the complete genome
          Length = 14548

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 376   cgcccgcgccggtgaaggcc 395
             ||||||||||||||||||||
Sbjct: 13006 cgcccgcgccggtgaaggcc 12987
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>gb|DQ418782.1| Hepatitis C virus isolate 01-09 polyprotein gene, complete cds
          Length = 9292

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 305  gaccactgcgccagccacgccggcgccg 332
            |||||| |||||||| ||||||||||||
Sbjct: 5849 gaccacagcgccagctacgccggcgccg 5822
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>gb|AE011996.1| Xanthomonas axonopodis pv. citri str. 306,  section 374 of 469 of
           the complete genome
          Length = 10994

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 312 gcgccagccacgccggcgcc 331
           ||||||||||||||||||||
Sbjct: 960 gcgccagccacgccggcgcc 979
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>gb|AE011802.1| Xanthomonas axonopodis pv. citri str. 306,  section 180 of 469 of
           the complete genome
          Length = 10973

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 312 gcgccagccacgccggcgcc 331
           ||||||||||||||||||||
Sbjct: 32  gcgccagccacgccggcgcc 51
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>gb|AE011801.1| Xanthomonas axonopodis pv. citri str. 306,  section 179 of 469 of the
             complete genome
          Length = 11819

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   gcgccagccacgccggcgcc 331
             ||||||||||||||||||||
Sbjct: 11791 gcgccagccacgccggcgcc 11810
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>gb|AE011710.1| Xanthomonas axonopodis pv. citri str. 306,  section 88 of 469 of the
            complete genome
          Length = 10860

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 312  gcgccagccacgccggcgcc 331
            ||||||||||||||||||||
Sbjct: 7078 gcgccagccacgccggcgcc 7059
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>dbj|AK142777.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
           library, clone:D930008M11 product:RIKEN cDNA A630025O09
           gene, full insert sequence
          Length = 4585

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 164 gcccgcggctgcgccggccg 183
           ||||||||||||||||||||
Sbjct: 280 gcccgcggctgcgccggccg 261
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>ref|NM_172637.1| Mus musculus HECT domain containing 2 (Hectd2), mRNA
          Length = 4616

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 164 gcccgcggctgcgccggccg 183
           ||||||||||||||||||||
Sbjct: 140 gcccgcggctgcgccggccg 121
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>ref|XM_687648.1| PREDICTED: Danio rerio hypothetical protein LOC564309 (LOC564309),
           mRNA
          Length = 2071

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 403 cccccgcgccgaccaccact 422
           ||||||||||||||||||||
Sbjct: 735 cccccgcgccgaccaccact 754
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>dbj|AB179322.1| Macaca fascicularis testis cDNA clone: QtsA-17564, similar to human
           FK506 binding protein 8, 38kDa (FKBP8), mRNA, RefSeq:
           NM_012181.2
          Length = 972

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 214 cccctgccccgcctgccgcc 233
           ||||||||||||||||||||
Sbjct: 845 cccctgccccgcctgccgcc 864
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>dbj|AK029549.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4921524L07 product:hypothetical HECT
           domain (Ubiquitin-protein ligase) containing protein,
           full insert sequence
          Length = 4616

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 164 gcccgcggctgcgccggccg 183
           ||||||||||||||||||||
Sbjct: 140 gcccgcggctgcgccggccg 121
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>gb|AC091219.2| Drosophila melanogaster 3L BAC RP98-4C3 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 168047

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     ccactcacactcacactccc 52
              ||||||||||||||||||||
Sbjct: 139772 ccactcacactcacactccc 139791
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>dbj|AK041629.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
           library, clone:A630025O09 product:hypothetical protein,
           full insert sequence
          Length = 4492

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 164 gcccgcggctgcgccggccg 183
           ||||||||||||||||||||
Sbjct: 251 gcccgcggctgcgccggccg 232
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>dbj|AK043646.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length
           enriched library, clone:A830015D01 product:hypothetical
           protein, full insert sequence
          Length = 1116

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 164 gcccgcggctgcgccggccg 183
           ||||||||||||||||||||
Sbjct: 241 gcccgcggctgcgccggccg 222
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 34       cactcacactcacactcccc 53
                ||||||||||||||||||||
Sbjct: 24761919 cactcacactcacactcccc 24761938
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 314     gccagccacgccggcgccgg 333
               ||||||||||||||||||||
Sbjct: 3920365 gccagccacgccggcgccgg 3920384
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 319     ccacgccggcgccggtgaag 338
               ||||||||||||||||||||
Sbjct: 1879283 ccacgccggcgccggtgaag 1879264
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>gb|AY787762.1| Streptomyces filamentosus strain NRRL 11379 daptomycin biosynthetic
             gene cluster, partial sequence
          Length = 127559

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 162   tcgcccgcggctgcgccggccggc 185
             |||||||||||| |||||||||||
Sbjct: 71491 tcgcccgcggctacgccggccggc 71514
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>dbj|AP002523.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0013F10
          Length = 163095

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 314   gccagccacgccggcgccgg 333
             ||||||||||||||||||||
Sbjct: 42269 gccagccacgccggcgccgg 42288
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 447     gccccggccgcccccgcgcc 466
               ||||||||||||||||||||
Sbjct: 7748672 gccccggccgcccccgcgcc 7748691
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>ref|XM_341380.2| PREDICTED: Rattus norvegicus zinc finger protein of the cerebellum
           5 (predicted) (Zic5_predicted), mRNA
          Length = 1469

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 443 gaaggccccggccgcccccg 462
           ||||||||||||||||||||
Sbjct: 459 gaaggccccggccgcccccg 440
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>ref|XM_220050.3| PREDICTED: Rattus norvegicus HECT domain containing 2 (predicted)
           (Hectd2_predicted), mRNA
          Length = 2343

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 164 gcccgcggctgcgccggccg 183
           ||||||||||||||||||||
Sbjct: 231 gcccgcggctgcgccggccg 212
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 429     acgccggcaccggtgaaggc 448
               ||||||||||||||||||||
Sbjct: 7359257 acgccggcaccggtgaaggc 7359276
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>dbj|AP004680.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0029G06
          Length = 169711

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 34    cactcacactcacactcccc 53
             ||||||||||||||||||||
Sbjct: 95600 cactcacactcacactcccc 95619
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>gb|AC144798.4| Mus musculus BAC clone RP24-364A24 from 14, complete sequence
          Length = 159766

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 443   gaaggccccggccgcccccg 462
             ||||||||||||||||||||
Sbjct: 91370 gaaggccccggccgcccccg 91351
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>dbj|AB114214.1| Mus musculus Zic5 mRNA for zinc finger protein of the cerebellum 5,
            complete cds
          Length = 1869

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 443  gaaggccccggccgcccccg 462
            ||||||||||||||||||||
Sbjct: 1062 gaaggccccggccgcccccg 1043
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>gb|AE003469.3| Drosophila melanogaster chromosome 3L, section 3 of 83 of the complete
              sequence
          Length = 286515

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     ccactcacactcacactccc 52
              ||||||||||||||||||||
Sbjct: 126451 ccactcacactcacactccc 126470
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>emb|BX629358.1|CNS09SBU Tetraodon nigroviridis BAC sequence
          Length = 157345

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 325    cggcgccggtgaaggccccg 344
              ||||||||||||||||||||
Sbjct: 124133 cggcgccggtgaaggccccg 124114
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 330    ccggtgaaggccccggccac 349
              ||||||||||||||||||||
Sbjct: 647547 ccggtgaaggccccggccac 647528
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 219     gccccgcctgccgccgacgc 238
               ||||||||||||||||||||
Sbjct: 2368922 gccccgcctgccgccgacgc 2368903
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>gb|AC130831.4| Mus musculus BAC clone RP24-80P9 from 14, complete sequence
          Length = 233804

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 204   cccaccgccacccctgcccc 223
             ||||||||||||||||||||
Sbjct: 95634 cccaccgccacccctgcccc 95653
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>dbj|AB193609.1| Streptomyces sp. NRRL 11266 tetronomycin biosynthetic gene cluster,
             partial and complete cds
          Length = 113234

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 447   gccccggccgcccccgcgcc 466
             ||||||||||||||||||||
Sbjct: 97322 gccccggccgcccccgcgcc 97303
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>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 164     gcccgcggctgcgccggccg 183
               ||||||||||||||||||||
Sbjct: 2534123 gcccgcggctgcgccggccg 2534142



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 11      gcctgcgcctccttctcgtc 30
               ||||||||||||||||||||
Sbjct: 1822815 gcctgcgcctccttctcgtc 1822834
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>dbj|AB042155.1| Mus musculus Opr mRNA, complete cds
          Length = 2464

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 443  gaaggccccggccgcccccg 462
            ||||||||||||||||||||
Sbjct: 1425 gaaggccccggccgcccccg 1406


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,313,361
Number of Sequences: 3902068
Number of extensions: 3313361
Number of successful extensions: 81581
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79116
Number of HSP's gapped (non-prelim): 2464
length of query: 471
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 449
effective length of database: 17,147,199,772
effective search space: 7699092697628
effective search space used: 7699092697628
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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