>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score =  157 bits (397), Expect = 1e-38
 Identities = 77/77 (100%), Positives = 77/77 (100%)
 Frame = +2

Query: 242 MASAFSSTVGAPASTPTIFLGKKVKNYYHGGNKMKSRVVRVMAAKKELDQGKQTDADRWK 421
           MASAFSSTVGAPASTPTIFLGKKVKNYYHGGNKMKSRVVRVMAAKKELDQGKQTDADRWK
Sbjct: 1   MASAFSSTVGAPASTPTIFLGKKVKNYYHGGNKMKSRVVRVMAAKKELDQGKQTDADRWK 60

Query: 422 GLAYDISDDQQDITRGK 472
           GLAYDISDDQQDITRGK
Sbjct: 61  GLAYDISDDQQDITRGK 77

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score =  106 bits (264), Expect = 3e-23
 Identities = 57/83 (68%), Positives = 62/83 (74%), Gaps = 6/83 (7%)
 Frame = +2

Query: 242 MASAFSSTVGAPASTPTIFLGKKVKNY------YHGGNKMKSRVVRVMAAKKELDQGKQT 403
           MA+AFSSTVGAPASTPT FLGKK+K        YHG +   S + R     KELD+GKQT
Sbjct: 1   MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKS---SNINRFKVMAKELDEGKQT 57

Query: 404 DADRWKGLAYDISDDQQDITRGK 472
           D DRWKGLAYDISDDQQDITRGK
Sbjct: 58  DQDRWKGLAYDISDDQQDITRGK 80

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score = 97.4 bits (241), Expect = 2e-20
 Identities = 55/86 (63%), Positives = 62/86 (72%), Gaps = 9/86 (10%)
 Frame = +2

Query: 242 MASAFSSTVGAPASTPT--IFLGKKVKN-------YYHGGNKMKSRVVRVMAAKKELDQG 394
           MA+AFSSTVGAPASTPT   FLGKK+          YHG +   +   + MAAK E+D+ 
Sbjct: 1   MAAAFSSTVGAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAK-EVDET 59

Query: 395 KQTDADRWKGLAYDISDDQQDITRGK 472
           KQTD DRWKGLAYDISDDQQDITRGK
Sbjct: 60  KQTDEDRWKGLAYDISDDQQDITRGK 85

>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score = 89.7 bits (221), Expect = 3e-18
 Identities = 52/83 (62%), Positives = 61/83 (73%), Gaps = 6/83 (7%)
 Frame = +2

Query: 242 MASAFSSTVGAPASTPTIFLGKKVKNY------YHGGNKMKSRVVRVMAAKKELDQGKQT 403
           MA+AFSSTVGAPASTPT FLGKK+K        YHG +   +R   VMAA+  +D+ + T
Sbjct: 1   MAAAFSSTVGAPASTPTNFLGKKLKKQVTSAVNYHGKSSKANRFT-VMAAEN-IDEKRNT 58

Query: 404 DADRWKGLAYDISDDQQDITRGK 472
           D  +WKGLAYDISDDQQDITRGK
Sbjct: 59  D--KWKGLAYDISDDQQDITRGK 79

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 37/72 (51%), Positives = 50/72 (69%), Gaps = 4/72 (5%)
 Frame = +2

Query: 269 GAPASTPT-IFLGKKVKNYYHG---GNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYD 436
           GA AS PT  F G  +K         +K+ +   +++AA+KE+++ +QT+ DRWKGLAYD
Sbjct: 22  GAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAYD 81

Query: 437 ISDDQQDITRGK 472
           ISDDQQDITRGK
Sbjct: 82  ISDDQQDITRGK 93

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score = 70.5 bits (171), Expect = 2e-12
 Identities = 35/84 (41%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
 Frame = +2

Query: 230 SINTMASAFSSTVGAPASTPTIFLGKKVKNYYHGG---NKMKSRVVRVMAAKKELDQGKQ 400
           ++N    + +++V   +   T F GK +K  Y  G    K+ ++ +R++A + ++D  KQ
Sbjct: 10  AVNKTPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVAEQIDVDPKKQ 69

Query: 401 TDADRWKGLAYDISDDQQDITRGK 472
           TD+DRWKGL  D SDDQQDITRGK
Sbjct: 70  TDSDRWKGLVQDFSDDQQDITRGK 93

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 41/74 (55%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
 Frame = +2

Query: 257 SSTVGAPASTPTIFLGKKVKNY--YHGGNKMKSRVVRVMAAKKELDQGKQTDADRWKGLA 430
           S  V APAST   FLGKKV     +   NK  +   +V+A K++    KQTD DRW+GLA
Sbjct: 23  SGAVSAPAST---FLGKKVVTVSRFAQSNKKSNGSFKVLAVKED----KQTDGDRWRGLA 75

Query: 431 YDISDDQQDITRGK 472
           YD SDDQQDITRGK
Sbjct: 76  YDTSDDQQDITRGK 89

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score = 67.8 bits (164), Expect = 1e-11
 Identities = 34/84 (40%), Positives = 53/84 (63%), Gaps = 3/84 (3%)
 Frame = +2

Query: 230 SINTMASAFSSTVGAPASTPTIFLG---KKVKNYYHGGNKMKSRVVRVMAAKKELDQGKQ 400
           ++N      + + G  +   + F G   KKV +     +K+ S   +++AA KE+++ +Q
Sbjct: 10  AVNRTLLNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVAADKEIEETQQ 69

Query: 401 TDADRWKGLAYDISDDQQDITRGK 472
           T+ DRW+GLAYD+SDDQQDITRGK
Sbjct: 70  TEGDRWRGLAYDVSDDQQDITRGK 93

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 38/74 (51%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
 Frame = +2

Query: 257 SSTVGAPASTPTIFLGKKVK--NYYHGGNKMKSRVVRVMAAKKELDQGKQTDADRWKGLA 430
           SS+   P+ST   FLG  +K  N     +K+ S  +R++A+   +D+ KQTD DRWKGLA
Sbjct: 22  SSSASVPSST---FLGSSLKKVNSRFTNSKVSSGSLRIVAS---VDEDKQTDKDRWKGLA 75

Query: 431 YDISDDQQDITRGK 472
           +D SDDQQDITRGK
Sbjct: 76  FDTSDDQQDITRGK 89

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 39/99 (39%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
 Frame = +2

Query: 185 LETTVIKLSAARRERSINTMASAFSSTVGAPASTPTIFLGKKVKNYYHGG---NKMKSRV 355
           + T+V  + AA      N    + +++V   +   T F GK +K  Y  G    K+ +R 
Sbjct: 1   MATSVSTIGAA------NKAPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRS 54

Query: 356 VRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDITRGK 472
           +R+ A +K+ D  KQT +DRWKGL  D SDDQQDI RGK
Sbjct: 55  LRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGK 93

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score = 62.0 bits (149), Expect = 7e-10
 Identities = 40/92 (43%), Positives = 51/92 (55%), Gaps = 15/92 (16%)
 Frame = +2

Query: 242 MASAFSSTVGAPASTP---------------TIFLGKKVKNYYHGGNKMKSRVVRVMAAK 376
           MA+A+S TVGA    P               T F G  +K       K  S   +++A  
Sbjct: 1   MAAAYS-TVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASSGNFKIVA-- 57

Query: 377 KELDQGKQTDADRWKGLAYDISDDQQDITRGK 472
           +E+ + +QTD D+WKGLAYDISDDQQDITRGK
Sbjct: 58  QEISEDQQTDKDKWKGLAYDISDDQQDITRGK 89

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score = 62.0 bits (149), Expect = 7e-10
 Identities = 40/92 (43%), Positives = 51/92 (55%), Gaps = 15/92 (16%)
 Frame = +2

Query: 242 MASAFSSTVGAPASTP---------------TIFLGKKVKNYYHGGNKMKSRVVRVMAAK 376
           MA+A+S TVGA    P               T F G  +K       K  S   +++A  
Sbjct: 1   MAAAYS-TVGAVNRAPLSLNGSGARASLVPSTAFFGSSLKKSAAKFPKASSGNFKIVA-- 57

Query: 377 KELDQGKQTDADRWKGLAYDISDDQQDITRGK 472
           +E+ + +QTD D+WKGLAYDISDDQQDITRGK
Sbjct: 58  QEISEDQQTDKDKWKGLAYDISDDQQDITRGK 89

>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 413

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 29/60 (48%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
 Frame = +2

Query: 296 FLGKKVK-NYYHGGNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQDITRGK 472
           FLG ++K +     +KM +   +++A   E D+ KQT+ D+W+GLA+D SDDQQDITRGK
Sbjct: 30  FLGSRLKVSSRFTTSKMVTGNFKIVA---EQDEEKQTEKDKWRGLAFDTSDDQQDITRGK 86

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score = 52.8 bits (125), Expect = 4e-07
 Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 17/92 (18%)
 Frame = +2

Query: 248 SAFSSTVGAPASTP--------------TIFLGKKVKNYYHGG---NKMKSRVVRVMAAK 376
           +A  ST+GA +  P              T F GK +K  Y  G    K+ +R +RV+A  
Sbjct: 2   AASVSTIGAASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVA-- 59

Query: 377 KELDQGKQTDADRWKGLAYDISDDQQDITRGK 472
           +E+D+ K+   DRWKGL  + SDDQQDI RGK
Sbjct: 60  QEVDETKE---DRWKGLYDNTSDDQQDIARGK 88

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score = 40.0 bits (92), Expect = 0.003
 Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +2

Query: 272 APASTPTI-FLGKKVKNYYHGGNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDD 448
           A AS PT  FLG  +K + +      SR   +     E    ++ + D+W  LA D SDD
Sbjct: 23  AGASVPTSGFLGSSLKKHTNVRFPSSSRTTSMTVKAAE---NEEKNTDKWAHLAKDFSDD 79

Query: 449 QQDITRGK 472
           Q DI RGK
Sbjct: 80  QLDIRRGK 87

>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score = 33.1 bits (74), Expect = 0.37
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
 Frame = +2

Query: 329 GGNKMKSRVVRVMAAKKELDQGKQTDADRWKGL--AYDISDDQQDITRGK 472
           GG ++ +R VR   A+ ++    +    RW+ +    D SDDQQDITRG+
Sbjct: 16  GGARVATRSVR--RAQLQVVAPSRKQMGRWRSIDAGVDASDDQQDITRGR 63

>MCM2_MOUSE (P97310) DNA replication licensing factor MCM2 (Minichromosome|
           maintenance protein 2 homolog) (Nuclear protein BM28)
          Length = 904

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 18/38 (47%), Positives = 24/38 (63%)
 Frame = -1

Query: 460 DVLLVVRDVVGQTLPPVRIGLLALVKFLFGRHDPHHPA 347
           DVL VVRD    T+ PV+  +LA  +F+ G H  HHP+
Sbjct: 658 DVLCVVRD----TVDPVQDEMLA--RFVVGSHVRHHPS 689

>MCM2_HUMAN (P49736) DNA replication licensing factor MCM2 (Minichromosome|
           maintenance protein 2 homolog) (Nuclear protein BM28)
          Length = 904

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 17/38 (44%), Positives = 24/38 (63%)
 Frame = -1

Query: 460 DVLLVVRDVVGQTLPPVRIGLLALVKFLFGRHDPHHPA 347
           D+L VVRD    T+ PV+  +LA  +F+ G H  HHP+
Sbjct: 658 DILCVVRD----TVDPVQDEMLA--RFVVGSHVRHHPS 689

>Y5626_BACAN (Q81JS3) Probable tautomerase BA5626/GBAA5626/BAS5226 (EC 5.3.2.-)|
          Length = 60

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +2

Query: 200 IKLSAARRERSINTMA----SAFSSTVGAPASTPTIFLGKKVKNYYHGGNKMKS 349
           +K+   R E     +A    +A S T GAP     +F+ +  KN+Y  G K  S
Sbjct: 5   VKMLEGRTEEQKKALAEKVTAAVSETTGAPEENIVVFIEEMSKNHYAVGGKRLS 58

>Y5378_BACCR (Q814P5) Probable tautomerase BC_5378 (EC 5.3.2.-)|
          Length = 60

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
 Frame = +2

Query: 200 IKLSAARRERSINTMA----SAFSSTVGAPASTPTIFLGKKVKNYYHGGNKMKS 349
           +K+   R E     +A    +A S T GAP     +F+ +  KN+Y  G K  S
Sbjct: 5   VKMLEGRTEEQKKALAEKVTAAVSETTGAPEENIVVFIEEMSKNHYAVGGKRLS 58

>EST2_RABIT (P14943) Liver carboxylesterase 2 (EC 3.1.1.1)|
          Length = 532

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 1   IASVPANHCTPLFYPYQLHPSLTIDLSPP 87
           +A +  +H    FY +Q  PS T DL PP
Sbjct: 396 VAHLQRSHAPTYFYEFQHRPSFTKDLRPP 424

>RNC_MYCS5 (Q4A589) Ribonuclease III (EC 3.1.26.3) (RNase III)|
          Length = 231

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +2

Query: 305 KKVKNYYHGGNKMKSRVVRVMAAKKELDQGKQTDADRWKGLAYDISDDQQD 457
           KK +N     + + S VV  + A   LDQG Q+  D  K   Y+I++  Q+
Sbjct: 110 KKARNEVLSSSNVLSDVVEALIAAIYLDQGMQSAKDFIKSHFYEIANKAQN 160

>Y1228_SYNPX (Q7U6V8) Hypothetical RNA methyltransferase SYNW1228 (EC 2.1.1.-)|
          Length = 465

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +1

Query: 427 GLRHLGRPAGHHSGE 471
           GLRHLG   GHH+GE
Sbjct: 205 GLRHLGLRIGHHTGE 219

>HMW2_MYCGE (P47460) Cytadherence high molecular weight protein 2 (Cytadherence|
            accessory protein 2)
          Length = 1805

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 23/91 (25%), Positives = 42/91 (46%)
 Frame = +2

Query: 188  ETTVIKLSAARRERSINTMASAFSSTVGAPASTPTIFLGKKVKNYYHGGNKMKSRVVRVM 367
            E  +++ S   RER+IN+  S                L KK++      +  + RV+R++
Sbjct: 1527 ENKLLQQSLIERERAINSKDS---------------LLNKKIETIKRQLHDKEMRVLRLV 1571

Query: 368  AAKKELDQGKQTDADRWKGLAYDISDDQQDI 460
               K  +Q  QT+ +R +   +D   ++QDI
Sbjct: 1572 DRMKLAEQKYQTEINRLRTQTFD--SEKQDI 1600

>AMT6_BACS7 (P19571) Glucan 1,4-alpha-maltohexaosidase precursor (EC 3.2.1.98)|
           (G6-amylase) (Maltohexaose-producing amylase)
           (Exo-maltohexaohydrolase)
          Length = 518

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 251 AFSSTVGAPASTPTIFLGKKVKNYYHGGNKMKSRVVRVMAAKKELDQGKQTD 406
           A++ T+      P++F G       HG   M+S++  ++ A+++   GKQ D
Sbjct: 385 AYALTLTREQGYPSVFYGDYYGIPTHGVPAMRSKIDPILEARQKYAYGKQND 436


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,525,143
Number of Sequences: 219361
Number of extensions: 1041938
Number of successful extensions: 3072
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 3027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3069
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)