ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet63g04 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 842 bits (425), Expect = 0.0 Identities = 425/425 (100%) Strand = Plus / Plus Query: 47 atcagctccatccatcactgacgatcgatctcagtccacctgcatctgtaggtgtactag 106 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2 atcagctccatccatcactgacgatcgatctcagtccacctgcatctgtaggtgtactag 61 Query: 107 tagtacgccggcctaatccagctgagagctgatcgagctagcttgcatataccactgcac 166 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 62 tagtacgccggcctaatccagctgagagctgatcgagctagcttgcatataccactgcac 121 Query: 167 gtacgcacatcaaattaattagaaactactgtaattaagttatcagcagcgagaagagaa 226 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 122 gtacgcacatcaaattaattagaaactactgtaattaagttatcagcagcgagaagagaa 181 Query: 227 cgatcgatcaacaccatggcttctgctttctcgtccaccgttggagctccggcgtcgacc 286 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 182 cgatcgatcaacaccatggcttctgctttctcgtccaccgttggagctccggcgtcgacc 241 Query: 287 ccgaccatcttcctgggcaagaaggtgaagaactactaccatggtggcaacaagatgaag 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 242 ccgaccatcttcctgggcaagaaggtgaagaactactaccatggtggcaacaagatgaag 301 Query: 347 agcagggtggtgagggtcatggcggccaaaaaggaacttgaccagggcaagcagaccgat 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 302 agcagggtggtgagggtcatggcggccaaaaaggaacttgaccagggcaagcagaccgat 361 Query: 407 gcggaccggtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgg 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 362 gcggaccggtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgg 421 Query: 467 gggaa 471 ||||| Sbjct: 422 gggaa 426
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 551 bits (278), Expect = e-154 Identities = 278/278 (100%) Strand = Plus / Plus Query: 1 atcgcatctgtacctgctaaccactgcacccctctcttttatccatatcagctccatcca 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 303 atcgcatctgtacctgctaaccactgcacccctctcttttatccatatcagctccatcca 362 Query: 61 tcactgacgatcgatctcagtccacctgcatctgtaggtgtactagtagtacgccggcct 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 363 tcactgacgatcgatctcagtccacctgcatctgtaggtgtactagtagtacgccggcct 422 Query: 121 aatccagctgagagctgatcgagctagcttgcatataccactgcacgtacgcacatcaaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 423 aatccagctgagagctgatcgagctagcttgcatataccactgcacgtacgcacatcaaa 482 Query: 181 ttaattagaaactactgtaattaagttatcagcagcgagaagagaacgatcgatcaacac 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 483 ttaattagaaactactgtaattaagttatcagcagcgagaagagaacgatcgatcaacac 542 Query: 241 catggcttctgctttctcgtccaccgttggagctccgg 278 |||||||||||||||||||||||||||||||||||||| Sbjct: 543 catggcttctgctttctcgtccaccgttggagctccgg 580 Score = 387 bits (195), Expect = e-104 Identities = 195/195 (100%) Strand = Plus / Plus Query: 277 ggcgtcgaccccgaccatcttcctgggcaagaaggtgaagaactactaccatggtggcaa 336 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2801 ggcgtcgaccccgaccatcttcctgggcaagaaggtgaagaactactaccatggtggcaa 2860 Query: 337 caagatgaagagcagggtggtgagggtcatggcggccaaaaaggaacttgaccagggcaa 396 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2861 caagatgaagagcagggtggtgagggtcatggcggccaaaaaggaacttgaccagggcaa 2920 Query: 397 gcagaccgatgcggaccggtggaagggtctggcctacgacatctcggacgaccagcagga 456 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2921 gcagaccgatgcggaccggtggaagggtctggcctacgacatctcggacgaccagcagga 2980 Query: 457 catcactcgggggaa 471 ||||||||||||||| Sbjct: 2981 catcactcgggggaa 2995 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 415 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcac 462 |||||||||||| || ||||| ||||| |||||||||||||||||||| Sbjct: 5662 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcac 5709
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 190 bits (96), Expect = 3e-45 Identities = 141/156 (90%) Strand = Plus / Plus Query: 316 gaactactaccatggtggcaacaagatgaagagcagggtggtgagggtcatggcggccaa 375 ||||||||||||||||||||||||||| || | |||||||| |||| |||||||||||| Sbjct: 118 gaactactaccatggtggcaacaagatcaacaatagggtggtcagggccatggcggccaa 177 Query: 376 aaaggaacttgaccagggcaagcagaccgatgcggaccggtggaagggtctggcctacga 435 ||||||||||||| ||||||||||||||||||| || |||||||||||||| || ||||| Sbjct: 178 aaaggaacttgacgagggcaagcagaccgatgccgatcggtggaagggtctcgcttacga 237 Query: 436 catctcggacgaccagcaggacatcactcgggggaa 471 |||||| || ||||||||||||||||| ||||||| Sbjct: 238 catctccgatgaccagcaggacatcacgagggggaa 273 Score = 131 bits (66), Expect = 2e-27 Identities = 78/82 (95%) Strand = Plus / Plus Query: 237 acaccatggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatct 296 |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct: 21 acacgatggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccacct 80 Query: 297 tcctgggcaagaaggtgaagaa 318 |||| || |||||||||||||| Sbjct: 81 tcctcgggaagaaggtgaagaa 102
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 103 bits (52), Expect = 5e-19 Identities = 64/68 (94%) Strand = Plus / Plus Query: 395 aagcagaccgatgcggaccggtggaagggtctggcctacgacatctcggacgaccagcag 454 ||||||||||| | |||| |||||||||| |||||||||||||||||||||||||||||| Sbjct: 198 aagcagaccgacgaggacaggtggaagggcctggcctacgacatctcggacgaccagcag 257 Query: 455 gacatcac 462 |||||||| Sbjct: 258 gacatcac 265 Score = 48.1 bits (24), Expect = 0.026 Identities = 36/40 (90%) Strand = Plus / Plus Query: 254 ttctcgtccaccgttggagctccggcgtcgaccccgacca 293 ||||| |||||||| ||||||||||| || |||||||||| Sbjct: 33 ttctcctccaccgtcggagctccggcctccaccccgacca 72
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 103 bits (52), Expect = 5e-19 Identities = 64/68 (94%) Strand = Plus / Plus Query: 395 aagcagaccgatgcggaccggtggaagggtctggcctacgacatctcggacgaccagcag 454 ||||||||||| | |||| |||||||||| |||||||||||||||||||||||||||||| Sbjct: 198 aagcagaccgacgaggacaggtggaagggcctggcctacgacatctcggacgaccagcag 257 Query: 455 gacatcac 462 |||||||| Sbjct: 258 gacatcac 265 Score = 48.1 bits (24), Expect = 0.026 Identities = 36/40 (90%) Strand = Plus / Plus Query: 254 ttctcgtccaccgttggagctccggcgtcgaccccgacca 293 ||||| |||||||| ||||||||||| || |||||||||| Sbjct: 33 ttctcctccaccgtcggagctccggcctccaccccgacca 72
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Minus Query: 377 aaggaacttgaccagggcaagcagaccgatgcggaccggtggaagggtctggcctacgac 436 ||||| || ||| |||||||||||||||| |||| ||||||||||||| ||||||||| Sbjct: 109739 aaggagctggacgagggcaagcagaccgaccaggacaggtggaagggtctcgcctacgac 109680 Query: 437 atctcggacgaccagcaggacatcactcgggggaag 472 ||||| || ||||||||||||||||| |||||||| Sbjct: 109679 atctccgatgaccagcaggacatcaccagggggaag 109644 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 413 cggtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaag 472 ||||||||||| || || ||||||||||| |||||||||||||||||||| |||||||| Sbjct: 113207 cggtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaag 113148 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 242 atggcttctgctttctcgtccaccgttggagctccgg 278 |||||| |||| ||||| ||||||||||||||||||| Sbjct: 109982 atggctgctgccttctcctccaccgttggagctccgg 109946 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 242 atggcttctgctttctcgtccaccgttggagctccgg 278 ||||||||||||||||| ||||| || ||||| |||| Sbjct: 113920 atggcttctgctttctcctccactgtcggagccccgg 113884
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Minus Query: 377 aaggaacttgaccagggcaagcagaccgatgcggaccggtggaagggtctggcctacgac 436 ||||| || ||| |||||||||||||||| |||| ||||||||||||| ||||||||| Sbjct: 31616 aaggagctggacgagggcaagcagaccgaccaggacaggtggaagggtctcgcctacgac 31557 Query: 437 atctcggacgaccagcaggacatcactcgggggaag 472 ||||| || ||||||||||||||||| |||||||| Sbjct: 31556 atctccgatgaccagcaggacatcaccagggggaag 31521 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 413 cggtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaag 472 ||||||||||| || || ||||||||||| |||||||||||||||||||| |||||||| Sbjct: 35084 cggtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaag 35025 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 242 atggcttctgctttctcgtccaccgttggagctccgg 278 |||||| |||| ||||| ||||||||||||||||||| Sbjct: 31859 atggctgctgccttctcctccaccgttggagctccgg 31823 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 242 atggcttctgctttctcgtccaccgttggagctccgg 278 ||||||||||||||||| ||||| || ||||| |||| Sbjct: 35797 atggcttctgctttctcctccactgtcggagccccgg 35761
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Plus Query: 377 aaggaacttgaccagggcaagcagaccgatgcggaccggtggaagggtctggcctacgac 436 ||||| || ||| |||||||||||||||| |||| ||||||||||||| ||||||||| Sbjct: 179 aaggagctggacgagggcaagcagaccgaccaggacaggtggaagggtctcgcctacgac 238 Query: 437 atctcggacgaccagcaggacatcactcgggggaag 472 ||||| || ||||||||||||||||| |||||||| Sbjct: 239 atctccgatgaccagcaggacatcaccagggggaag 274 Score = 89.7 bits (45), Expect = 8e-15 Identities = 69/77 (89%) Strand = Plus / Plus Query: 242 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 301 |||||| |||| ||||| ||||||||||||||||||||||| || ||||||| ||||||| Sbjct: 35 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 94 Query: 302 ggcaagaaggtgaagaa 318 || |||||| ||||||| Sbjct: 95 gggaagaagctgaagaa 111
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Plus Query: 377 aaggaacttgaccagggcaagcagaccgatgcggaccggtggaagggtctggcctacgac 436 ||||| || ||| |||||||||||||||| |||| ||||||||||||| ||||||||| Sbjct: 171 aaggagctggacgagggcaagcagaccgaccaggacaggtggaagggtctcgcctacgac 230 Query: 437 atctcggacgaccagcaggacatcactcgggggaag 472 ||||| || ||||||||||||||||| |||||||| Sbjct: 231 atctccgatgaccagcaggacatcaccagggggaag 266 Score = 89.7 bits (45), Expect = 8e-15 Identities = 69/77 (89%) Strand = Plus / Plus Query: 242 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 301 |||||| |||| ||||| ||||||||||||||||||||||| || ||||||| ||||||| Sbjct: 27 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 86 Query: 302 ggcaagaaggtgaagaa 318 || |||||| ||||||| Sbjct: 87 gggaagaagctgaagaa 103
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Minus Query: 377 aaggaacttgaccagggcaagcagaccgatgcggaccggtggaagggtctggcctacgac 436 ||||| || ||| |||||||||||||||| |||| ||||||||||||| ||||||||| Sbjct: 28304878 aaggagctggacgagggcaagcagaccgaccaggacaggtggaagggtctcgcctacgac 28304819 Query: 437 atctcggacgaccagcaggacatcactcgggggaag 472 ||||| || ||||||||||||||||| |||||||| Sbjct: 28304818 atctccgatgaccagcaggacatcaccagggggaag 28304783 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 413 cggtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaag 472 ||||||||||| || || ||||||||||| |||||||||||||||||||| |||||||| Sbjct: 28308346 cggtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaag 28308287 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 242 atggcttctgctttctcgtccaccgttggagctccgg 278 |||||| |||| ||||| ||||||||||||||||||| Sbjct: 28305121 atggctgctgccttctcctccaccgttggagctccgg 28305085 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 242 atggcttctgctttctcgtccaccgttggagctccgg 278 ||||||||||||||||| ||||| || ||||| |||| Sbjct: 28309059 atggcttctgctttctcctccactgtcggagccccgg 28309023
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Plus Query: 377 aaggaacttgaccagggcaagcagaccgatgcggaccggtggaagggtctggcctacgac 436 ||||| || ||| |||||||||||||||| |||| ||||||||||||| ||||||||| Sbjct: 219 aaggagctggacgagggcaagcagaccgaccaggacaggtggaagggtctcgcctacgac 278 Query: 437 atctcggacgaccagcaggacatcactcgggggaag 472 ||||| || ||||||||||||||||| |||||||| Sbjct: 279 atctccgatgaccagcaggacatcaccagggggaag 314 Score = 89.7 bits (45), Expect = 8e-15 Identities = 69/77 (89%) Strand = Plus / Plus Query: 242 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 301 |||||| |||| ||||| ||||||||||||||||||||||| || ||||||| ||||||| Sbjct: 75 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 134 Query: 302 ggcaagaaggtgaagaa 318 || |||||| ||||||| Sbjct: 135 gggaagaagctgaagaa 151
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Plus Query: 377 aaggaacttgaccagggcaagcagaccgatgcggaccggtggaagggtctggcctacgac 436 ||||| || ||| |||||||||||||||| |||| ||||||||||||| ||||||||| Sbjct: 207 aaggagctggacgagggcaagcagaccgaccaggacaggtggaagggtctcgcctacgac 266 Query: 437 atctcggacgaccagcaggacatcactcgggggaag 472 ||||| || ||||||||||||||||| |||||||| Sbjct: 267 atctccgatgaccagcaggacatcaccagggggaag 302 Score = 89.7 bits (45), Expect = 8e-15 Identities = 69/77 (89%) Strand = Plus / Plus Query: 242 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 301 |||||| |||| ||||| ||||||||||||||||||||||| || ||||||| ||||||| Sbjct: 63 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 122 Query: 302 ggcaagaaggtgaagaa 318 || |||||| ||||||| Sbjct: 123 gggaagaagctgaagaa 139
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Plus Query: 377 aaggaacttgaccagggcaagcagaccgatgcggaccggtggaagggtctggcctacgac 436 ||||| || ||| |||||||||||||||| |||| ||||||||||||| ||||||||| Sbjct: 208 aaggagctggacgagggcaagcagaccgaccaggacaggtggaagggtctcgcctacgac 267 Query: 437 atctcggacgaccagcaggacatcactcgggggaag 472 ||||| || ||||||||||||||||| |||||||| Sbjct: 268 atctccgatgaccagcaggacatcaccagggggaag 303 Score = 89.7 bits (45), Expect = 8e-15 Identities = 69/77 (89%) Strand = Plus / Plus Query: 242 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 301 |||||| |||| ||||| ||||||||||||||||||||||| || ||||||| ||||||| Sbjct: 64 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 123 Query: 302 ggcaagaaggtgaagaa 318 || |||||| ||||||| Sbjct: 124 gggaagaagctgaagaa 140
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Plus Query: 377 aaggaacttgaccagggcaagcagaccgatgcggaccggtggaagggtctggcctacgac 436 ||||| || ||| |||||||||||||||| |||| ||||||||||||| ||||||||| Sbjct: 207 aaggagctggacgagggcaagcagaccgaccaggacaggtggaagggtctcgcctacgac 266 Query: 437 atctcggacgaccagcaggacatcactcgggggaag 472 ||||| || ||||||||||||||||| |||||||| Sbjct: 267 atctccgatgaccagcaggacatcaccagggggaag 302 Score = 89.7 bits (45), Expect = 8e-15 Identities = 69/77 (89%) Strand = Plus / Plus Query: 242 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 301 |||||| |||| ||||| ||||||||||||||||||||||| || ||||||| ||||||| Sbjct: 63 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 122 Query: 302 ggcaagaaggtgaagaa 318 || |||||| ||||||| Sbjct: 123 gggaagaagctgaagaa 139
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Minus Query: 377 aaggaacttgaccagggcaagcagaccgatgcggaccggtggaagggtctggcctacgac 436 ||||| || ||| |||||||||||||||| |||| ||||||||||||| ||||||||| Sbjct: 28287327 aaggagctggacgagggcaagcagaccgaccaggacaggtggaagggtctcgcctacgac 28287268 Query: 437 atctcggacgaccagcaggacatcactcgggggaag 472 ||||| || ||||||||||||||||| |||||||| Sbjct: 28287267 atctccgatgaccagcaggacatcaccagggggaag 28287232 Score = 71.9 bits (36), Expect = 2e-09 Identities = 54/60 (90%) Strand = Plus / Minus Query: 413 cggtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaag 472 ||||||||||| || || ||||||||||| |||||||||||||||||||| |||||||| Sbjct: 28290795 cggtggaagggactcgcgtacgacatctccgacgaccagcaggacatcaccagggggaag 28290736 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Minus Query: 242 atggcttctgctttctcgtccaccgttggagctccgg 278 |||||| |||| ||||| ||||||||||||||||||| Sbjct: 28287570 atggctgctgccttctcctccaccgttggagctccgg 28287534 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Minus Query: 242 atggcttctgctttctcgtccaccgttggagctccgg 278 ||||||||||||||||| ||||| || ||||| |||| Sbjct: 28291508 atggcttctgctttctcctccactgtcggagccccgg 28291472
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Plus Query: 377 aaggaacttgaccagggcaagcagaccgatgcggaccggtggaagggtctggcctacgac 436 ||||| || ||| |||||||||||||||| |||| ||||||||||||| ||||||||| Sbjct: 212 aaggagctggacgagggcaagcagaccgaccaggacaggtggaagggtctcgcctacgac 271 Query: 437 atctcggacgaccagcaggacatcactcgggggaag 472 ||||| || ||||||||||||||||| |||||||| Sbjct: 272 atctccgatgaccagcaggacatcaccagggggaag 307 Score = 83.8 bits (42), Expect = 5e-13 Identities = 66/74 (89%) Strand = Plus / Plus Query: 242 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 301 |||||| |||| ||||| ||||||||||||||||||||||| || ||||||| ||||||| Sbjct: 68 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 127 Query: 302 ggcaagaaggtgaa 315 || |||||| |||| Sbjct: 128 gggaagaagctgaa 141
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 95.6 bits (48), Expect = 1e-16 Identities = 84/96 (87%) Strand = Plus / Plus Query: 377 aaggaacttgaccagggcaagcagaccgatgcggaccggtggaagggtctggcctacgac 436 ||||| || ||| |||||||||||||||| |||| ||||||||||||| ||||||||| Sbjct: 206 aaggagctggacgagggcaagcagaccgaccaggacaggtggaagggtctcgcctacgac 265 Query: 437 atctcggacgaccagcaggacatcactcgggggaag 472 ||||| || ||||||||||||||||| |||||||| Sbjct: 266 atctccgatgaccagcaggacatcaccagggggaag 301 Score = 89.7 bits (45), Expect = 8e-15 Identities = 69/77 (89%) Strand = Plus / Plus Query: 242 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 301 |||||| |||| ||||| ||||||||||||||||||||||| || ||||||| ||||||| Sbjct: 62 atggctgctgccttctcctccaccgttggagctccggcgtccactccgaccaacttcctg 121 Query: 302 ggcaagaaggtgaagaa 318 || |||||| ||||||| Sbjct: 122 gggaagaagctgaagaa 138
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 93.7 bits (47), Expect = 5e-16 Identities = 74/83 (89%) Strand = Plus / Plus Query: 390 agggcaagcagaccgatgcggaccggtggaagggtctggcctacgacatctcggacgacc 449 |||||||||||||||| |||| ||||||||||||| |||||||||||||| || |||| Sbjct: 4 agggcaagcagaccgaccaggacaggtggaagggtctcgcctacgacatctccgatgacc 63 Query: 450 agcaggacatcactcgggggaag 472 ||||||||||||| |||||||| Sbjct: 64 agcaggacatcaccagggggaag 86
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Plus Query: 390 agggcaagcagaccgatgcggaccggtggaagggtctggcctacgacatctcggacgacc 449 |||||||||||||||| | |||| ||||||||| || |||||||| ||||| ||||||| Sbjct: 227 agggcaagcagaccgacggggacaagtggaagggcctcgcctacgatatctccgacgacc 286 Query: 450 agcaggacatcac 462 ||||||||||||| Sbjct: 287 agcaggacatcac 299 Score = 52.0 bits (26), Expect = 0.002 Identities = 55/65 (84%) Strand = Plus / Plus Query: 242 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 301 |||||| |||| ||||| |||||||| ||||||||||| || || || |||| |||||| Sbjct: 70 atggctgctgccttctcctccaccgtcggagctccggcttccacgccnaccagcttcctc 129 Query: 302 ggcaa 306 ||||| Sbjct: 130 ggcaa 134
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 81.8 bits (41), Expect = 2e-12 Identities = 65/73 (89%) Strand = Plus / Plus Query: 390 agggcaagcagaccgatgcggaccggtggaagggtctggcctacgacatctcggacgacc 449 |||||||||||||||| | |||| ||||||||| || |||||||| ||||| ||||||| Sbjct: 237 agggcaagcagaccgacggggacaagtggaagggcctcgcctacgatatctccgacgacc 296 Query: 450 agcaggacatcac 462 ||||||||||||| Sbjct: 297 agcaggacatcac 309 Score = 58.0 bits (29), Expect = 3e-05 Identities = 56/65 (86%) Strand = Plus / Plus Query: 242 atggcttctgctttctcgtccaccgttggagctccggcgtcgaccccgaccatcttcctg 301 |||||| |||| ||||| |||||||| ||||||||||| || || ||||||| |||||| Sbjct: 80 atggctgctgccttctcctccaccgtcggagctccggcttccacgccgaccagcttcctc 139 Query: 302 ggcaa 306 ||||| Sbjct: 140 ggcaa 144
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 63.9 bits (32), Expect = 4e-07 Identities = 44/48 (91%) Strand = Plus / Plus Query: 415 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcac 462 |||||||||||| || ||||| ||||| |||||||||||||||||||| Sbjct: 241 gtggaagggtcttgcgtacgatatctccgacgaccagcaggacatcac 288
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear gene for chloroplast product Length = 1671 Score = 58.0 bits (29), Expect = 3e-05 Identities = 50/57 (87%) Strand = Plus / Plus Query: 416 tggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggggaag 472 |||||||||||||||||||| ||||| || ||||| || |||||||| |||||||| Sbjct: 295 tggaagggtctggcctacgatatctctgatgaccaacaagacatcacaagggggaag 351
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 48.1 bits (24), Expect = 0.026 Identities = 36/40 (90%) Strand = Plus / Plus Query: 433 cgacatctcggacgaccagcaggacatcactcgggggaag 472 ||||| |||||| ||||||||||||||||| |||||||| Sbjct: 222 cgacacctcggatgaccagcaggacatcaccagggggaag 261
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 48.1 bits (24), Expect = 0.026 Identities = 36/40 (90%) Strand = Plus / Plus Query: 433 cgacatctcggacgaccagcaggacatcactcgggggaag 472 ||||| |||||| ||||||||||||||||| |||||||| Sbjct: 85 cgacacctcggatgaccagcaggacatcaccagggggaag 124
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 48.1 bits (24), Expect = 0.026 Identities = 36/40 (90%) Strand = Plus / Plus Query: 433 cgacatctcggacgaccagcaggacatcactcgggggaag 472 ||||| |||||| ||||||||||||||||| |||||||| Sbjct: 115 cgacacctcggatgaccagcaggacatcaccagggggaag 154
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 48.1 bits (24), Expect = 0.026 Identities = 42/48 (87%) Strand = Plus / Plus Query: 415 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcac 462 |||||||||||| || ||| ||||| |||||||||||||||||||| Sbjct: 321 gtggaagggtcttgctaccgatatctccgacgaccagcaggacatcac 368
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 48.1 bits (24), Expect = 0.026 Identities = 42/48 (87%) Strand = Plus / Plus Query: 415 gtggaagggtctggcctacgacatctcggacgaccagcaggacatcac 462 |||||||||||| || ||| ||||| |||||||||||||||||||| Sbjct: 66 gtggaagggtcttgctaccgatatctccgacgaccagcaggacatcac 113
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 46.1 bits (23), Expect = 0.10 Identities = 53/63 (84%) Strand = Plus / Plus Query: 409 ggaccggtggaagggtctggcctacgacatctcggacgaccagcaggacatcactcgggg 468 |||||| ||||| || |||| ||||| || ||||||||||| |||||||| ||||| || Sbjct: 87 ggaccgatggaaagggttggcttacgatatttcggacgaccaacaggacattactcgagg 146 Query: 469 gaa 471 ||| Sbjct: 147 gaa 149
>emb|BX085195.5| Zebrafish DNA sequence from clone DKEY-226A5 in linkage group 3, complete sequence Length = 227111 Score = 44.1 bits (22), Expect = 0.41 Identities = 28/30 (93%) Strand = Plus / Plus Query: 175 atcaaattaattagaaactactgtaattaa 204 |||||||||||||||||||| | ||||||| Sbjct: 94967 atcaaattaattagaaactattctaattaa 94996
>gb|DQ306205.1| Takifugu rubripes odorant receptor (OR11306-1) gene, complete cds Length = 771 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 340 gatgaagagcagggtggtgagggtca 365 |||||||||||||||||||| ||||| Sbjct: 51 gatgaagagcagggtggtgacggtca 26
>emb|BX248357.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment 4/8 Length = 349535 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 ataccactgcacgtacgcaca 175 ||||||||||||||||||||| Sbjct: 40071 ataccactgcacgtacgcaca 40091
>gb|AC149051.4| Mus musculus BAC clone RP24-325F10 from 8, complete sequence Length = 184939 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 gcacatcaaattaattagaaa 191 ||||||||||||||||||||| Sbjct: 141560 gcacatcaaattaattagaaa 141580
>emb|CR388060.19| Zebrafish DNA sequence from clone DKEY-208J8 in linkage group 16, complete sequence Length = 213586 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 173 acatcaaattaattagaaac 192 |||||||||||||||||||| Sbjct: 134825 acatcaaattaattagaaac 134844
>gb|AC108416.5| Mus musculus chromosome 14, clone RP23-114J12, complete sequence Length = 227555 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 332 ggcaacaagatgaagagcagggtg 355 ||||| |||||||||||||||||| Sbjct: 71317 ggcaagaagatgaagagcagggtg 71340
>emb|AL162412.11| Human DNA sequence from clone RP11-109D9 on chromosome 9 Contains the 5' end of the APBA1 gene for myloid beta (A4) precursor protein-binding, family A, member 1 (X11), two novel genes, the 5' end of a novel gene possible ortholog of mouse RIKEN cDNA 1700028P14 gene and two CpG islands, complete sequence Length = 189277 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 cacatcaaattaattagaaa 191 |||||||||||||||||||| Sbjct: 60853 cacatcaaattaattagaaa 60834
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome Length = 5205140 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 ttcctgggcaagaaggtgaa 315 |||||||||||||||||||| Sbjct: 2810912 ttcctgggcaagaaggtgaa 2810931
>emb|BX936324.6| Zebrafish DNA sequence from clone CH211-74F16 in linkage group 3, complete sequence Length = 154312 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 atcaaattaattagaaacta 194 |||||||||||||||||||| Sbjct: 118154 atcaaattaattagaaacta 118135
>emb|BX511260.11| Zebrafish DNA sequence from clone CH211-121A2, complete sequence Length = 190733 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 182 taattagaaactactgtaattaag 205 |||||| ||||||||||||||||| Sbjct: 63356 taattacaaactactgtaattaag 63379
>emb|BX927222.8| Zebrafish DNA sequence from clone CH211-256M12 in linkage group 16, complete sequence Length = 154714 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 acatcaaattaattagaaac 192 |||||||||||||||||||| Sbjct: 111012 acatcaaattaattagaaac 110993
>dbj|AK129018.1| Mus musculus cDNA fis, clone TRACH3033868, highly similar to Homo sapiens semaphorin sem2 Length = 4540 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 332 ggcaacaagatgaagagcagggtg 355 ||||| |||||||||||||||||| Sbjct: 2328 ggcaagaagatgaagagcagggtg 2351
>dbj|AK137463.1| Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830005K22 product:Semaphorin sem2 (FLJ00014 protein) homolog [Homo sapiens], full insert sequence Length = 4532 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 332 ggcaacaagatgaagagcagggtg 355 ||||| |||||||||||||||||| Sbjct: 2330 ggcaagaagatgaagagcagggtg 2353
>emb|AL732624.6| Mouse DNA sequence from clone RP23-118D1 on chromosome 4, complete sequence Length = 110038 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 cacatcaaattaattagaaa 191 |||||||||||||||||||| Sbjct: 30211 cacatcaaattaattagaaa 30192
>dbj|AB127607.1| Mus musculus Sema3G mRNA for Semaphorin 3G, complete cds Length = 3686 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 332 ggcaacaagatgaagagcagggtg 355 ||||| |||||||||||||||||| Sbjct: 2313 ggcaagaagatgaagagcagggtg 2336
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 ggtcatggcggccaaaaagg 380 |||||||||||||||||||| Sbjct: 711783 ggtcatggcggccaaaaagg 711764
>emb|BX255909.5| Zebrafish DNA sequence from clone CH211-235O3 in linkage group 19, complete sequence Length = 180994 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 182 taattagaaactactgtaattaag 205 |||||| ||||||||||||||||| Sbjct: 115724 taattacaaactactgtaattaag 115701
>gb|AC006566.2|AC006566 Homo sapiens chromosome 18, clone hRPK.376_P_6, complete sequence Length = 189199 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 178 aaattaattagaaactactg 197 |||||||||||||||||||| Sbjct: 129327 aaattaattagaaactactg 129308
>ref|NM_001025379.1| Mus musculus sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G (Sema3g), mRNA Length = 3686 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 332 ggcaacaagatgaagagcagggtg 355 ||||| |||||||||||||||||| Sbjct: 2313 ggcaagaagatgaagagcagggtg 2336
>dbj|AP005900.1| Homo sapiens genomic DNA, chromosome 18p clone:RP11-931H21, complete sequence Length = 215253 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 aaattaattagaaactactg 197 |||||||||||||||||||| Sbjct: 187843 aaattaattagaaactactg 187862
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 443 gacgaccagcaggacatcac 462 |||||||||||||||||||| Sbjct: 1452086 gacgaccagcaggacatcac 1452067 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,841,841 Number of Sequences: 3902068 Number of extensions: 3841841 Number of successful extensions: 74370 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 74170 Number of HSP's gapped (non-prelim): 200 length of query: 472 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 450 effective length of database: 17,147,199,772 effective search space: 7716239897400 effective search space used: 7716239897400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
