ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet63f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SARM1_MOUSE (Q6PDS3) Sterile alpha and TIR motif-containing prot... 30 1.7
2AF10_MOUSE (O54826) Protein AF-10 28 8.6

>SARM1_MOUSE (Q6PDS3) Sterile alpha and TIR motif-containing protein 1 (Tir-1|
           homolog)
          Length = 724

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 98  SLLHQCARSLAGCACSGGRRARACVV 21
           +LL  CA +LA CA  GG+  + C+V
Sbjct: 221 ALLRHCALALANCALHGGQTVQRCMV 246



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>AF10_MOUSE (O54826) Protein AF-10|
          Length = 1068

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 2    TLNSTPTPRTHARASPRYRHSRPASART 85
            T++  P P TH    P   H  PA+A T
Sbjct: 927  TISQNPAPLTHTSVPPNAAHPMPAAALT 954


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,533,870
Number of Sequences: 219361
Number of extensions: 220677
Number of successful extensions: 885
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 80,573,946
effective HSP length: 41
effective length of database: 71,580,145
effective search space used: 1717923480
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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