>KCNH3_RAT (O89047) Potassium voltage-gated channel subfamily H member 3|
           (Voltage-gated potassium channel subunit Kv12.2)
           (Ether-a-go-go-like potassium channel 2) (ELK channel 2)
           (rElk2) (Brain-specific eag-like channel 1) (BEC1)
          Length = 1087

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
 Frame = +3

Query: 198 GGRHCQREASAGRTMFGRAASRPCSIHHHHASIYIFHLAH*GLVTKQSTHVTHLR----- 362
           GG    +E   GR  +GRA S+  + +   +   ++HL+  G + KQ      L      
Sbjct: 140 GGPDNWKERGGGRRRYGRAGSKGFNANRRRSRAVLYHLS--GHLQKQPKGKHKLNKGVFG 197

Query: 363 EAPT-PNHKFASLRK 404
           E P  P +K A++RK
Sbjct: 198 EKPNLPEYKVAAIRK 212

>KCNH3_MOUSE (Q9WVJ0) Potassium voltage-gated channel subfamily H member 3|
           (Voltage-gated potassium channel subunit Kv12.2)
           (Ether-a-go-go-like potassium channel 2) (ELK channel 2)
           (mElk2)
          Length = 1087

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
 Frame = +3

Query: 198 GGRHCQREASAGRTMFGRAASRPCSIHHHHASIYIFHLAH*GLVTKQSTHVTHLR----- 362
           GG    +E   GR  +GRA S+  + +   +   ++HL+  G + KQ      L      
Sbjct: 140 GGPDNWKERGGGRRRYGRAGSKGFNANRRRSRAVLYHLS--GHLQKQPKGKHKLNKGVFG 197

Query: 363 EAPT-PNHKFASLRK 404
           E P  P +K A++RK
Sbjct: 198 EKPNLPEYKVAAIRK 212

>YJG6_YEAST (P40364) Hypothetical 28.5 kDa protein in SMC3-MRPL8 intergenic|
           region
          Length = 252

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 242 VWPCSQPSVLHPPSPCIDIYLPSRSLRSGN*AKH 343
           +W C  PS   PP P +D  LP   ++S     H
Sbjct: 94  IWKCLVPSKAIPPLPQLDFLLPLEEIKSDKSHSH 127

>KCNH3_HUMAN (Q9ULD8) Potassium voltage-gated channel subfamily H member 3|
           (Voltage-gated potassium channel subunit Kv12.2)
           (Ether-a-go-go-like potassium channel 2) (ELK channel 2)
           (ELK2) (Brain-specific eag-like channel 1) (BEC1)
          Length = 1083

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
 Frame = +3

Query: 198 GGRHCQREASAGRTMFGRAASRPCSIHHHHASIYIFHLAH*GLVTKQSTHVTHLR----- 362
           GG    +E   GR  +GRA S+  + +   +   ++HL+  G + KQ      L      
Sbjct: 140 GGPDRWKETGGGRRRYGRARSKGFNANRRRSRAVLYHLS--GHLQKQPKGKHKLNKGVFG 197

Query: 363 EAPT-PNHKFASLRK 404
           E P  P +K A++RK
Sbjct: 198 EKPNLPEYKVAAIRK 212

>HXADA_BRARE (Q6W990) Homeobox protein Hox-A13a|
          Length = 310

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
 Frame = +3

Query: 135 VSDQASFPPTQLFSSS----ASAQIGGRHCQ--------REASAGRTMFGRAASRPCSIH 278
           +S  AS  P+  + SS    A+A   G+ C           AS     FG     PC + 
Sbjct: 49  MSHPASLAPSATYPSSEVAAAAAGDSGKQCSPCSAVQGSASASISYGYFGGGGYYPCRMS 108

Query: 279 HHHAS 293
           HHH S
Sbjct: 109 HHHGS 113

>YAD7_YEAST (P39728) Hypothetical 30.5 kDa protein in PYK1-SNC1 intergenic|
           region
          Length = 267

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 258 WLHGQTSSYLQKLHAGSVARRFVPKPKN*TVE 163
           W  GQT   L++    SV RR V  P+N T++
Sbjct: 223 WEFGQTQEILKRRQTSSVKRRCVNLPENSTID 254

>MAAZ4_SCHCO (P37938) Mating-type protein A-alpha Z4|
          Length = 940

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 254 SQPSVLHPPSPCIDIYLPSRSLRSG 328
           S PSV  PPS  + + LPSR + SG
Sbjct: 586 SSPSVSSPPSVSVSLPLPSRGVPSG 610

>BAZ1A_HUMAN (Q9NRL2) Bromodomain adjacent to zinc finger domain protein 1A|
           (ATP-utilizing chromatin assembly and remodeling factor
           1) (hACF1) (ATP-dependent chromatin remodelling protein)
           (Williams syndrome transcription factor-related
           chromatin remodeli
          Length = 1556

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -1

Query: 365 FPQVSNMCALLSYQTSVSEMEDIYRCMVMVDGARTAGCTAKHR 237
           +PQ+   C+L S       + DI R  ++  GA      AK+R
Sbjct: 530 WPQLHQGCSLKSLDLDSCTLSDILRLHILASGADVTSANAKYR 572

>YB75_YEAST (P38321) Protein YBR225W|
          Length = 900

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 20/53 (37%), Positives = 29/53 (54%)
 Frame = -3

Query: 372 SGLPSSE*HVCFA*LPDLSERDGRYISMHGDGGWSTDGWLHGQTSSYLQKLHA 214
           SG P+SE    ++  PD S    R+I  +  G     G LHG TS+ ++KLH+
Sbjct: 144 SGTPTSEVKANYS--PDPSAP--RFIVSNMVGNGRGGGGLHGATSNVVKKLHS 192

>CAC1G_HUMAN (O43497) Voltage-dependent T-type calcium channel alpha-1G subunit|
           (Voltage-gated calcium channel alpha subunit Cav3.1)
           (Cav3.1c) (NBR13)
          Length = 2377

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 180 SASAQIGGRHCQREASAGRTMFGRAASRPCSIHHHHASIYIFHLAH 317
           S+ A +GG+  Q  +S  R+   R  S    +HHHH   + +HL +
Sbjct: 466 SSPAPLGGQETQPSSSCSRSH--RRLSVHHLVHHHHHHHHHYHLGN 509

>HERC2_DROME (Q9VR91) HECT domain and RCC1-like domain-containing protein 2|
          Length = 4912

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 309  DGRYISMHGDGGWSTDGWLHGQTSSY 232
            +GR IS  G+ GW    W  G T+SY
Sbjct: 1949 EGRIISEVGEDGWVRVEWYTGATNSY 1974

>MEOX2_XENLA (P39021) Homeobox protein MOX-2|
          Length = 298

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 23/68 (33%), Positives = 30/68 (44%)
 Frame = +3

Query: 84  TPGGMADSAAAKQARWGVSDQASFPPTQLFSSSASAQIGGRHCQREASAGRTMFGRAASR 263
           T  G+   A +  A  G SD  S+P   L SSS+S  + G   +       +MFG    R
Sbjct: 15  TSQGLHPFAQSSLALHGRSDHMSYP--DLSSSSSSCILTGYPNEE------SMFGSQHHR 66

Query: 264 PCSIHHHH 287
               HHHH
Sbjct: 67  GHHHHHHH 74

>RY44_DROME (Q24498) Ryanodine receptor 44F|
          Length = 5127

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +1

Query: 55  EGNVVWSET*HRAEWRIQLQLSKLGGGFRTRLHSPQLNCLVLRLRHKSAG 204
           EG VV ++   R+ WR++L  +K  GGF    H        +R+RH + G
Sbjct: 247 EGGVVMAQA--RSLWRLELARTKWTGGFINWYHP-------MRIRHITTG 287

>PRDM5_HUMAN (Q9NQX1) PR domain zinc finger protein 5 (PR domain-containing|
           protein 5)
          Length = 630

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -1

Query: 326 QTSVSEMEDIYRCMVMVDGARTAGCTAKHRPTCRSFTLAVSPADLCRSR 180
           ++S+ E    ++C V      +A    +H+ TCR     V  AD C  R
Sbjct: 224 KSSLKESSRSFQCSVCNSSFSSASSFEQHQETCRGDAKFVCKADSCGKR 272

>TRI25_MOUSE (Q61510) Tripartite motif protein 25 (Zinc finger protein 147)|
           (Estrogen-responsive finger protein) (Efp)
          Length = 634

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = +3

Query: 114 AKQARWGVSDQASFPPTQLFSSSASAQIGGRHCQRE 221
           A+QAR  V D    PP +  +SSA+ Q+   HC  E
Sbjct: 79  AEQARTPVDDWT--PPARFSASSAATQVACDHCLTE 112

>HRH1_CAVPO (P31389) Histamine H1 receptor|
          Length = 488

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 105 SAAAKQARWGVSDQASFPPTQLFSSSASAQIGGR 206
           S +A+   W V D  SFP T   +S+ +A +GG+
Sbjct: 343 SISARPEEWTVVDGQSFPITDSDTSTEAAPMGGQ 376

>DNBI_HHV2H (P89452) Major DNA-binding protein (Infected cell protein 8) (ICP 8|
           protein)
          Length = 1196

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 20/74 (27%), Positives = 34/74 (45%)
 Frame = +3

Query: 171 FSSSASAQIGGRHCQREASAGRTMFGRAASRPCSIHHHHASIYIFHLAH*GLVTKQSTHV 350
           F ++ +A +G R      + G  + G A S      H+  S+Y+FH       + Q+ ++
Sbjct: 61  FEANVAAVVGSR------TTG--LGGTAVSLKLMPSHYSPSVYVFHGGRHLAPSTQAPNL 112

Query: 351 THLREAPTPNHKFA 392
           T L E   P+  FA
Sbjct: 113 TRLCERARPHFGFA 126

>THIC_MYCPA (P61426) Thiamine biosynthesis protein thiC|
          Length = 540

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +1

Query: 220 KLLQVGRCLAVQPAVRAPSTITMHRYISSISLTEVW 327
           +L ++ +   VQ  +  P  + MH+ + ++ L E W
Sbjct: 322 ELTKIAKSHGVQVMIEGPGHVPMHKIVENVRLEEEW 357

>CYPE_BACSU (O08336) Probable bifunctional P-450:NADPH-P450 reductase 2|
           [Includes: Cytochrome P450 102 (EC 1.14.14.1);
           NADPH--cytochrome P450 reductase (EC 1.6.2.4)]
          Length = 1054

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 273 WSTDGWLHGQTSSYLQKLHAGSVARRFVPKPKN 175
           WS  G   G  S+YL +L+ G  A  F+  P++
Sbjct: 859 WSGRGEYRGVASNYLAELNTGDAAACFIRTPQS 891


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,090,982
Number of Sequences: 219361
Number of extensions: 1391876
Number of successful extensions: 3607
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3603
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)