Clone Information

BLAST Search Result

Clone Name	baet63c02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3	269	2e-72
2	UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2	234	6e-62
3	UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1	234	6e-62
4	UBE1Y_MOUSE (P31254) Ubiquitin-activating enzyme E1 Y (Fragment)	151	9e-37
5	UBE1_HUMAN (P22314) Ubiquitin-activating enzyme E1 (A1S9 protein)	148	7e-36
6	UBE1_RABIT (Q29504) Ubiquitin-activating enzyme E1	147	1e-35
7	UBE1_MOUSE (Q02053) Ubiquitin-activating enzyme E1 1	144	8e-35
8	UBE1X_MOUSE (P31253) Ubiquitin-activating enzyme E1 X (Fragment)	144	8e-35
9	UBA1_YEAST (P22515) Ubiquitin-activating enzyme E1 1	139	3e-33
10	UBA1_CANAL (P52495) Ubiquitin-activating enzyme E1 1 (Fragment)	137	1e-32
11	UBA1_SCHPO (O94609) Ubiquitin-activating enzyme E1 1 (Poly(A)+ R...	129	5e-30
12	UBE1L_HUMAN (P41226) Ubiquitin-activating enzyme E1 homolog (D8)	115	4e-26
13	ULE1B_HUMAN (Q9UBT2) Ubiquitin-like 1-activating enzyme E1B (SUM...	53	3e-07
14	ULE1B_MOUSE (Q9Z1F9) Ubiquitin-like 1-activating enzyme E1B (SUM...	52	5e-07
15	UBA2_YEAST (P52488) Ubiquitin-activating enzyme E1-like (Polymer...	46	4e-05
16	UBA3_CAEEL (Q19360) NEDD8-activating enzyme E1 catalytic subunit...	43	4e-04
17	UBA3_SCHPO (Q09765) NEDD8-activating enzyme E1 catalytic subunit...	37	0.024
18	SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1...	35	0.090
19	UBA3_ARATH (O65041) NEDD8-activating enzyme E1 catalytic subunit...	34	0.15
20	UBA3_PONPY (Q5R4A0) NEDD8-activating enzyme E1 catalytic subunit...	34	0.20
21	UBA3_HUMAN (Q8TBC4) NEDD8-activating enzyme E1 catalytic subunit...	33	0.26
22	TOP1_XENLA (P41512) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoi...	33	0.26
23	UBA3_RAT (Q99MI7) NEDD8-activating enzyme E1 catalytic subunit (...	33	0.26
24	UBA3_MOUSE (Q8C878) NEDD8-activating enzyme E1 catalytic subunit...	33	0.26
25	YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'regio...	32	0.99
26	UBA3_BRARE (Q7ZVX6) NEDD8-activating enzyme E1 catalytic subunit...	31	1.3
27	PUM_DROME (P25822) Maternal protein pumilio	30	2.2
28	SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1	30	2.2
29	SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1	30	2.2
30	KLEG1_ECOLI (Q52282) Putative protein kleG	30	2.2
31	RPOC_PELUB (Q4FLL3) DNA-directed RNA polymerase beta' chain (EC ...	30	2.2
32	RPOC_NITOC (Q3J8Q8) DNA-directed RNA polymerase beta' chain (EC ...	30	2.2
33	CWC25_EMENI (Q5B0I1) Pre-mRNA-splicing factor cwc25	30	2.9
34	CWC25_ASPFU (Q4X1D7) Pre-mRNA-splicing factor cwc25	30	2.9
35	YFRD_SCHPO (Q9UT43) Putative phospholipid-transporting ATPase C8...	30	3.8
36	IF2_COREF (Q8FPA7) Translation initiation factor IF-2	29	4.9
37	GLGB_STRAU (P52980) 1,4-alpha-glucan branching enzyme (EC 2.4.1....	29	4.9
38	RIMS2_RAT (Q9JIS1) Regulating synaptic membrane exocytosis prote...	29	6.4
39	FABH_ARATH (P49243) 3-oxoacyl-[acyl-carrier-protein] synthase II...	28	8.4
40	CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor	28	8.4
41	CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor	28	8.4
42	SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1...	28	8.4
43	LPXK_SILPO (Q5LMW7) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.13...	28	8.4
44	CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor	28	8.4
45	CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor	28	8.4
46	RADA_TREPA (O83985) DNA repair protein radA homolog (DNA repair ...	28	8.4
47	DXS_PROMP (Q7V1G6) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2...	28	8.4
48	PTRB_MORLA (Q59536) Protease 2 (EC 3.4.21.83) (Protease II) (Oli...	28	8.4
49	MOT3_RAT (O70461) Monocarboxylate transporter 3 (MCT 3)	28	8.4
50	MOT3_MOUSE (O35308) Monocarboxylate transporter 3 (MCT 3) (Proto...	28	8.4
51	FTSKL_DEIRA (Q9RXB5) Hypothetical ftsK-like protein DR0400	28	8.4
52	SYN3_HUMAN (O14994) Synapsin-3 (Synapsin III)	28	8.4

>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3|
          Length = 1053

 Score =  269 bits (688), Expect = 2e-72
 Identities = 133/148 (89%), Positives = 139/148 (93%), Gaps = 3/148 (2%)
 Frame = +1

Query: 22   VARICQEATSRIP---MKPIQFEKDDDTNFHMDLISGLANMRARNYSIPEVDKLKAKFIA 192
            +A++ + A   +P   MKPIQFEKDDDTNFHMDLISGLANMRARNYSIPEVDKLKAKFIA
Sbjct: 832  LAKLQEYAKMLLPGFQMKPIQFEKDDDTNFHMDLISGLANMRARNYSIPEVDKLKAKFIA 891

Query: 193  GRIIPAIATSTAMATGLVCLELYKVIAGEHPVEDYRNTFVNLALPLFSMAEPVPPKVMKH 372
            GRIIPAIATSTAMATGLVCLELYKVIAGEHPVEDYRNTF NLALPLFSMAEPVPPKVMKH
Sbjct: 892  GRIIPAIATSTAMATGLVCLELYKVIAGEHPVEDYRNTFANLALPLFSMAEPVPPKVMKH 951

Query: 373  KETSWTVWDRWSVKGNLTLAELLQWFAD 456
            KETSWTVWDRWSV+GNLTLAELLQWFAD
Sbjct: 952  KETSWTVWDRWSVQGNLTLAELLQWFAD 979



 Score = 37.7 bits (86), Expect = 0.014
 Identities = 18/20 (90%), Positives = 18/20 (90%)
 Frame = +2

Query: 2   IEDLLAKLQEYAKRLPPGFQ 61
           IEDLLAKLQEYAK L PGFQ
Sbjct: 828 IEDLLAKLQEYAKMLLPGFQ 847

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>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2|
          Length = 1051

 Score =  234 bits (598), Expect = 6e-62
 Identities = 111/144 (77%), Positives = 125/144 (86%), Gaps = 4/144 (2%)
 Frame = +1

Query: 37   QEATSRIP----MKPIQFEKDDDTNFHMDLISGLANMRARNYSIPEVDKLKAKFIAGRII 204
            +E +  +P    M PIQFEKDDDTNFHMD+I+G ANMRARNYSIPEVDKLKAKFIAGRII
Sbjct: 834  EEVSKTLPSGFHMNPIQFEKDDDTNFHMDVIAGFANMRARNYSIPEVDKLKAKFIAGRII 893

Query: 205  PAIATSTAMATGLVCLELYKVIAGEHPVEDYRNTFVNLALPLFSMAEPVPPKVMKHKETS 384
            PAIATSTAMATGLVCLELYK +AG H VEDYRNTF NLA+PLFS+AEPVPPK +KH+E S
Sbjct: 894  PAIATSTAMATGLVCLELYKALAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHQELS 953

Query: 385  WTVWDRWSVKGNLTLAELLQWFAD 456
            WTVWDRW+V GN+TL ELL+W  +
Sbjct: 954  WTVWDRWTVTGNITLRELLEWLKE 977



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +2

Query: 2   IEDLLAKLQEYAKRLPPGFQ*N 67
           IE+L+AKL+E +K LP GF  N
Sbjct: 826 IEELIAKLEEVSKTLPSGFHMN 847

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>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1|
          Length = 1051

 Score =  234 bits (598), Expect = 6e-62
 Identities = 111/144 (77%), Positives = 125/144 (86%), Gaps = 4/144 (2%)
 Frame = +1

Query: 37   QEATSRIP----MKPIQFEKDDDTNFHMDLISGLANMRARNYSIPEVDKLKAKFIAGRII 204
            +E +  +P    M PIQFEKDDDTNFHMD+I+G ANMRARNYSIPEVDKLKAKFIAGRII
Sbjct: 834  EEVSKTLPSGFHMNPIQFEKDDDTNFHMDVIAGFANMRARNYSIPEVDKLKAKFIAGRII 893

Query: 205  PAIATSTAMATGLVCLELYKVIAGEHPVEDYRNTFVNLALPLFSMAEPVPPKVMKHKETS 384
            PAIATSTAMATGLVCLELYK +AG H VEDYRNTF NLA+PLFS+AEPVPPK +KH+E S
Sbjct: 894  PAIATSTAMATGLVCLELYKALAGGHKVEDYRNTFANLAIPLFSIAEPVPPKTIKHQELS 953

Query: 385  WTVWDRWSVKGNLTLAELLQWFAD 456
            WTVWDRW+V GN+TL ELL+W  +
Sbjct: 954  WTVWDRWTVTGNITLRELLEWLKE 977



 Score = 29.6 bits (65), Expect = 3.8
 Identities = 13/22 (59%), Positives = 17/22 (77%)
 Frame = +2

Query: 2   IEDLLAKLQEYAKRLPPGFQ*N 67
           IE+L+AKL+E +K LP GF  N
Sbjct: 826 IEELIAKLEEVSKTLPSGFHMN 847

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>UBE1Y_MOUSE (P31254) Ubiquitin-activating enzyme E1 Y (Fragment)|
          Length = 442

 Score =  151 bits (381), Expect = 9e-37
 Identities = 71/136 (52%), Positives = 95/136 (69%), Gaps = 6/136 (4%)
 Frame = +1

Query: 61  MKPIQFEKDDDTNFHMDLISGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATG 240
           M PI FEKDDD+NFHMD I   +N+RA NY I   D+ K+K IAG+IIPAIAT+T+   G
Sbjct: 228 MYPIDFEKDDDSNFHMDFIVAASNLRAENYGISPADRHKSKLIAGKIIPAIATTTSAIVG 287

Query: 241 LVCLELYKVIAGEHPVEDYRNTFVNLALPLFSMAEPVPPKVMKHKETSWTVWDRWSVKG- 417
           LVCLELYKV+ G   +E Y+N+F+NLALPLFS + P+ P+  +  +  WT+WDR+ V+G 
Sbjct: 288 LVCLELYKVVQGHQQLESYKNSFINLALPLFSFSAPLAPECHQFYDQEWTLWDRFDVQGL 347

Query: 418 -----NLTLAELLQWF 450
                 +TL + L +F
Sbjct: 348 QPSGEEMTLKQFLDYF 363

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>UBE1_HUMAN (P22314) Ubiquitin-activating enzyme E1 (A1S9 protein)|
          Length = 1058

 Score =  148 bits (373), Expect = 7e-36
 Identities = 70/136 (51%), Positives = 92/136 (67%), Gaps = 6/136 (4%)
 Frame = +1

Query: 61   MKPIQFEKDDDTNFHMDLISGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATG 240
            M PI FEKDDD+NFHMD I   +N+RA NY IP  D+ K+K IAG+IIPAIAT+TA   G
Sbjct: 844  MYPIDFEKDDDSNFHMDFIVAASNLRAENYDIPSADRHKSKLIAGKIIPAIATTTAAVVG 903

Query: 241  LVCLELYKVIAGEHPVEDYRNTFVNLALPLFSMAEPVPPKVMKHKETSWTVWDRWSVKG- 417
            LVCLELYKV+ G   ++ Y+N F+NLALP F  +EP+     ++    WT+WDR+ V+G 
Sbjct: 904  LVCLELYKVVQGHRQLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEVQGL 963

Query: 418  -----NLTLAELLQWF 450
                  +TL + L +F
Sbjct: 964  QPNGEEMTLKQFLDYF 979

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>UBE1_RABIT (Q29504) Ubiquitin-activating enzyme E1|
          Length = 1058

 Score =  147 bits (371), Expect = 1e-35
 Identities = 70/136 (51%), Positives = 92/136 (67%), Gaps = 6/136 (4%)
 Frame = +1

Query: 61   MKPIQFEKDDDTNFHMDLISGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATG 240
            M PI FEKDDD+NFHMD I   +N+RA NY IP  D+ K+K IAG+IIPAIAT+TA   G
Sbjct: 844  MYPIDFEKDDDSNFHMDFIVAASNLRAENYDIPPADRHKSKLIAGKIIPAIATTTAAVVG 903

Query: 241  LVCLELYKVIAGEHPVEDYRNTFVNLALPLFSMAEPVPPKVMKHKETSWTVWDRWSVKG- 417
            LVCLELYKV+ G   ++ Y+N F+NLALP F  +EP+     ++    WT+WDR+ V+G 
Sbjct: 904  LVCLELYKVVQGHRHLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEVQGL 963

Query: 418  -----NLTLAELLQWF 450
                  +TL + L +F
Sbjct: 964  QPNGEEMTLKQFLDYF 979

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>UBE1_MOUSE (Q02053) Ubiquitin-activating enzyme E1 1|
          Length = 1058

 Score =  144 bits (364), Expect = 8e-35
 Identities = 69/136 (50%), Positives = 91/136 (66%), Gaps = 6/136 (4%)
 Frame = +1

Query: 61   MKPIQFEKDDDTNFHMDLISGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATG 240
            M PI FEKDDD+NFHMD I   +N+RA NY I   D+ K+K IAG+IIPAIAT+TA   G
Sbjct: 844  MYPIDFEKDDDSNFHMDFIVAASNLRAENYDISPADRHKSKLIAGKIIPAIATTTAAVVG 903

Query: 241  LVCLELYKVIAGEHPVEDYRNTFVNLALPLFSMAEPVPPKVMKHKETSWTVWDRWSVKG- 417
            LVCLELYKV+ G   ++ Y+N F+NLALP F  +EP+     ++    WT+WDR+ V+G 
Sbjct: 904  LVCLELYKVVQGHQQLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEVQGL 963

Query: 418  -----NLTLAELLQWF 450
                  +TL + L +F
Sbjct: 964  QPNGEEMTLKQFLDYF 979

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>UBE1X_MOUSE (P31253) Ubiquitin-activating enzyme E1 X (Fragment)|
          Length = 450

 Score =  144 bits (364), Expect = 8e-35
 Identities = 69/136 (50%), Positives = 91/136 (66%), Gaps = 6/136 (4%)
 Frame = +1

Query: 61  MKPIQFEKDDDTNFHMDLISGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATG 240
           M PI FEKDDD+NFHMD I   +N+RA NY I   D+ K+K IAG+IIPAIAT+TA   G
Sbjct: 230 MYPIDFEKDDDSNFHMDFIVAASNLRAENYDISPADRHKSKLIAGKIIPAIATTTAAVVG 289

Query: 241 LVCLELYKVIAGEHPVEDYRNTFVNLALPLFSMAEPVPPKVMKHKETSWTVWDRWSVKG- 417
           LVCLELYKV+ G   ++ Y+N F+NLALP F  +EP+     ++    WT+WDR+ V+G 
Sbjct: 290 LVCLELYKVVQGHQQLDSYKNGFLNLALPFFGFSEPLAAPRHQYYNQEWTLWDRFEVQGV 349

Query: 418 -----NLTLAELLQWF 450
                 +TL + L +F
Sbjct: 350 QPNGEEMTLKQFLDYF 365

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>UBA1_YEAST (P22515) Ubiquitin-activating enzyme E1 1|
          Length = 1024

 Score =  139 bits (350), Expect = 3e-33
 Identities = 66/131 (50%), Positives = 95/131 (72%), Gaps = 1/131 (0%)
 Frame = +1

Query: 61   MKPIQFEKDDDTNFHMDLISGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATG 240
            ++P+ FEKDDDTN H++ I+  +N RA+NY I   D+ K KFIAGRIIPAIAT+T++ TG
Sbjct: 816  LEPVDFEKDDDTNHHIEFITACSNCRAQNYFIETADRQKTKFIAGRIIPAIATTTSLVTG 875

Query: 241  LVCLELYKVIAGEHPVEDYRNTFVNLALPLFSMAEPV-PPKVMKHKETSWTVWDRWSVKG 417
            LV LELYK+I  +  +E Y+N FVNLALP F  +EP+  PK   + +    +WDR+ +KG
Sbjct: 876  LVNLELYKLIDNKTDIEQYKNGFVNLALPFFGFSEPIASPKGEYNNKKYDKIWDRFDIKG 935

Query: 418  NLTLAELLQWF 450
            ++ L++L++ F
Sbjct: 936  DIKLSDLIEHF 946

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>UBA1_CANAL (P52495) Ubiquitin-activating enzyme E1 1 (Fragment)|
          Length = 205

 Score =  137 bits (346), Expect = 1e-32
 Identities = 66/127 (51%), Positives = 88/127 (69%), Gaps = 1/127 (0%)
 Frame = +1

Query: 73  QFEKDDDTNFHMDLISGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCL 252
           +FEKDDDTN H++ I+  +N RA NY I   D  K KFIAG+IIPAIAT+TA+ TGLVCL
Sbjct: 1   EFEKDDDTNHHIEFITAASNCRALNYGIEIADAHKTKFIAGKIIPAIATTTALVTGLVCL 60

Query: 253 ELYKVIAGEHPVEDYRNTFVNLALPLFSMAEPVPPKVMKHKETSW-TVWDRWSVKGNLTL 429
           ELYKV+ G+  +E Y+N F+NLALP    +EP+     K+    +  +WDR+ + G++TL
Sbjct: 61  ELYKVVDGKDDIEQYKNGFINLALPFIGFSEPIKSPEGKYNNKKFDQIWDRFELNGDITL 120

Query: 430 AELLQWF 450
            ELL  F
Sbjct: 121 QELLDHF 127

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>UBA1_SCHPO (O94609) Ubiquitin-activating enzyme E1 1 (Poly(A)+ RNA transport|
            protein 3)
          Length = 1012

 Score =  129 bits (323), Expect = 5e-30
 Identities = 59/131 (45%), Positives = 94/131 (71%), Gaps = 1/131 (0%)
 Frame = +1

Query: 61   MKPIQFEKDDDTNFHMDLISGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATG 240
            + P +FEKDDD+N H+D I+  +N+RA NY I   D+ K KF+AG+I+PA+ TSTA+ +G
Sbjct: 805  LTPAEFEKDDDSNHHIDFITAASNLRAMNYDITPADRFKTKFVAGKIVPAMCTSTAVVSG 864

Query: 241  LVCLELYKVIAGEHPVEDYRNTFVNLALPLFSMAEPV-PPKVMKHKETSWTVWDRWSVKG 417
            LVCLEL K++ G+  +E+Y+N F NLA+ LF+ ++P+  PK+  + +    +WDR+++  
Sbjct: 865  LVCLELVKLVDGKKKIEEYKNGFFNLAIGLFTFSDPIASPKMKVNGKEIDKIWDRYNLP- 923

Query: 418  NLTLAELLQWF 450
            + TL EL+ +F
Sbjct: 924  DCTLQELIDYF 934

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>UBE1L_HUMAN (P41226) Ubiquitin-activating enzyme E1 homolog (D8)|
          Length = 1011

 Score =  115 bits (289), Expect = 4e-26
 Identities = 53/118 (44%), Positives = 77/118 (65%)
 Frame = +1

Query: 58   PMKPIQFEKDDDTNFHMDLISGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMAT 237
            P+KP+ FEKDDD+NFH+D +   A++R +NY IP V++ ++K I G+IIPAIAT+TA   
Sbjct: 801  PLKPLMFEKDDDSNFHVDFVVAAASLRCQNYGIPPVNRAQSKRIVGQIIPAIATTTAAVA 860

Query: 238  GLVCLELYKVIAGEHPVEDYRNTFVNLALPLFSMAEPVPPKVMKHKETSWTVWDRWSV 411
            GL+ LELYKV++G  P   +R+++++LA        P  P +       WT WDR  V
Sbjct: 861  GLLGLELYKVVSGPRPRSAFRHSYLHLAENYLIRYMPFAPAIQTFHHLKWTSWDRLKV 918

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>ULE1B_HUMAN (Q9UBT2) Ubiquitin-like 1-activating enzyme E1B (SUMO-1-activating|
           enzyme subunit 2) (Anthracycline-associated resistance
           ARX)
          Length = 640

 Score = 53.1 bits (126), Expect = 3e-07
 Identities = 29/80 (36%), Positives = 49/80 (61%)
 Frame = +1

Query: 76  FEKDDDTNFHMDLISGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLE 255
           ++KDD +   MD ++  AN+R   +S+    +   K +AG IIPAIAT+ A+  GL+ LE
Sbjct: 344 WDKDDPSA--MDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLE 401

Query: 256 LYKVIAGEHPVEDYRNTFVN 315
             K+++G+  ++  R  F+N
Sbjct: 402 GLKILSGK--IDQCRTIFLN 419

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>ULE1B_MOUSE (Q9Z1F9) Ubiquitin-like 1-activating enzyme E1B (SUMO-1-activating|
           enzyme subunit 2) (Anthracycline-associated resistance
           ARX)
          Length = 638

 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 29/80 (36%), Positives = 48/80 (60%)
 Frame = +1

Query: 76  FEKDDDTNFHMDLISGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLE 255
           ++KDD     MD ++  AN+R   +S+    +   K +AG IIPAIAT+ A+  GL+ LE
Sbjct: 342 WDKDDPPA--MDFVTSAANLRMHIFSMNMKSRFDIKSMAGNIIPAIATTNAVIAGLIVLE 399

Query: 256 LYKVIAGEHPVEDYRNTFVN 315
             K+++G+  ++  R  F+N
Sbjct: 400 GLKILSGK--IDQCRTIFLN 417

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>UBA2_YEAST (P52488) Ubiquitin-activating enzyme E1-like|
           (Polymerase-interacting protein 2)
          Length = 636

 Score = 46.2 bits (108), Expect = 4e-05
 Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 3/83 (3%)
 Frame = +1

Query: 31  ICQEATSRIPMKP--IQFEKDD-DTNFHMDLISGLANMRARNYSIPEVDKLKAKFIAGRI 201
           I Q+   R P +   I+F+KDD DT   ++ ++  AN+R+  ++IP       K IAG I
Sbjct: 313 ITQKLMDRYPKEQNHIEFDKDDADT---LEFVATAANIRSHIFNIPMKSVFDIKQIAGNI 369

Query: 202 IPAIATSTAMATGLVCLELYKVI 270
           IPAIAT+ A+  G   L   +V+
Sbjct: 370 IPAIATTNAIVAGASSLISLRVL 392

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>UBA3_CAEEL (Q19360) NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-)|
           (Ubiquitin-activating enzyme 3 homolog) (Ectopic
           membrane ruffles in embryo protein 1)
          Length = 430

 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
 Frame = +1

Query: 58  PMKPIQFEKDDDTNFHMDLISGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMAT 237
           P + +  + DD    H++ +   A++RA  Y+I  VD+     +  RIIPA+A++ A+  
Sbjct: 237 PFEGVSLDADDP--IHVEWVLERASLRAEKYNIRGVDRRLTSGVLKRIIPAVASTNAVIA 294

Query: 238 GLVCLELYKVIAG-EHPVEDYRN 303
               LE  K+      P+++Y N
Sbjct: 295 ASCALEALKLATNIAKPIDNYLN 317

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>UBA3_SCHPO (Q09765) NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-)|
           (Ubiquitin-activating enzyme E1 3)
          Length = 444

 Score = 37.0 bits (84), Expect = 0.024
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
 Frame = +1

Query: 37  QEATSRIPMKPIQFEKDDDTNFHMDLISGLANMRARNYSIPE--VDKLKAKFIAGRIIPA 210
           QE    +  K   FE D+    H+D +   +  RA  + IP   +++   + I  RIIPA
Sbjct: 241 QEVFEPLDGKNSNFEPDNIR--HIDWLVKRSIERANKFQIPSSSINRFFVQGIVKRIIPA 298

Query: 211 IATSTAMATGLVCLELYKVIAGEHPVED 294
           +A++ A+     C E  K++   +P  D
Sbjct: 299 VASTNAIIAASCCNEALKILTESNPFLD 326

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>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 35.0 bits (79), Expect = 0.090
 Identities = 21/80 (26%), Positives = 37/80 (46%)
 Frame = +3

Query: 90  RHQLSHGSNIRASKHACKELQHPRSRQAEGQVHRRQDHPSHRNLNRNGHRARVPRAVQGH 269
           R Q    S+   S  + ++ +  RS    G+V RR+ H   R+ + +  + +   + +G 
Sbjct: 486 RRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRGR 545

Query: 270 RR*APRRGLPQHIREPGPAP 329
           RR +P     +  R P PAP
Sbjct: 546 RRRSPSPPPTRRRRSPSPAP 565



 Score = 28.9 bits (63), Expect = 6.4
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = +3

Query: 123 ASKHACKELQHPRSR-QAEGQVHRRQDHPSH---RNLNRNGHRARVP-RAVQGHRR*APR 287
           + K   KE   PRSR +++ +   R   PSH   R  +R+  R+  P R     RR +PR
Sbjct: 265 SKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPR 324

Query: 288 RGLPQHIREPGP 323
           R  P     P P
Sbjct: 325 RRTPPRRMPPPP 336

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>UBA3_ARATH (O65041) NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-)|
           (RUB-activating enzyme) (Ubiquitin activating enzyme
           E1-like protein)
          Length = 454

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 20/63 (31%), Positives = 31/63 (49%)
 Frame = +1

Query: 85  DDDTNFHMDLISGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 264
           D D   HM  +   A  RA  + IP V     + +   IIPAIA++ A+ +    LE  K
Sbjct: 246 DPDEPEHMKWVYDEAIRRAELFGIPGVTYSLTQGVVKNIIPAIASTNAIISAACALETLK 305

Query: 265 VIA 273
           +++
Sbjct: 306 IVS 308

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>UBA3_PONPY (Q5R4A0) NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-)|
           (Ubiquitin-activating enzyme 3) (NEDD8-activating enzyme
           E1C) (Ubiquitin-activating enzyme E1C)
          Length = 463

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +1

Query: 85  DDDTNFHMDLISGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 264
           D D   H+  I   +  RA  Y+I  V     + +  RIIPA+A++ A+   +   E++K
Sbjct: 271 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVVAAVCATEVFK 330

Query: 265 VIAGEH-PVEDY 297
           +    + P+ +Y
Sbjct: 331 IATSAYIPLNNY 342

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>UBA3_HUMAN (Q8TBC4) NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-)|
           (Ubiquitin-activating enzyme 3) (NEDD8-activating enzyme
           E1C) (Ubiquitin-activating enzyme E1C)
          Length = 463

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +1

Query: 85  DDDTNFHMDLISGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 264
           D D   H+  I   +  RA  Y+I  V     + +  RIIPA+A++ A+   +   E++K
Sbjct: 271 DGDDPEHIQWIFQKSLERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 330

Query: 265 VIAGEH-PVEDY 297
           +    + P+ +Y
Sbjct: 331 IATSAYIPLNNY 342

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>TOP1_XENLA (P41512) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
          Length = 829

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 90  RHQLSHGSNIRASKHACKELQHPRSRQAEGQVHRRQDHPSHRNLNRNGHR 239
           +H  S   +    KH  K   + + R+ +G+ HR +D   HR+ N   HR
Sbjct: 45  KHNNSEHRDPSEKKHKDKHKNNDKHREKDGEKHRERDGEKHRDKNGEKHR 94

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>UBA3_RAT (Q99MI7) NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-)|
           (Ubiquitin-activating enzyme 3) (NEDD8-activating enzyme
           E1C) (Ubiquitin-activating enzyme E1C)
          Length = 462

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +1

Query: 85  DDDTNFHMDLISGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 264
           D D   H+  I   +  RA  Y+I  V     + +  RIIPA+A++ A+   +   E++K
Sbjct: 271 DGDDPEHIQWIFQKSVERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 330

Query: 265 VIAGEH-PVEDY 297
           +    + P+ +Y
Sbjct: 331 IATSAYIPLNNY 342

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>UBA3_MOUSE (Q8C878) NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-)|
           (Ubiquitin-activating enzyme 3) (NEDD8-activating enzyme
           E1C) (Ubiquitin-activating enzyme E1C)
          Length = 462

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +1

Query: 85  DDDTNFHMDLISGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 264
           D D   H+  I   +  RA  Y+I  V     + +  RIIPA+A++ A+   +   E++K
Sbjct: 271 DGDDPEHIQWIFQKSIERASQYNIRGVTYRLTQGVVKRIIPAVASTNAVIAAVCATEVFK 330

Query: 265 VIAGEH-PVEDY 297
           +    + P+ +Y
Sbjct: 331 IATSAYIPLNNY 342

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>YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'region of gyrA and|
           gyrB (ORF 3)
          Length = 437

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +3

Query: 150 QHPRSRQAEGQVHRRQD--HPSHRNLNRNGHRARVPRAVQGHRR*APRRGLPQHIREPGP 323
           QHPR R A  +V   QD  HP  + L      A  PR  Q  RR   R    +H+R+  P
Sbjct: 137 QHPRGRHASDRV---QDGAHPRRQRLREQPRHAGRPRRRQPPRRGRSRGTHRRHLRQ-AP 192

Query: 324 APLLDG 341
            P + G
Sbjct: 193 RPAVRG 198

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>UBA3_BRARE (Q7ZVX6) NEDD8-activating enzyme E1 catalytic subunit (EC 6.3.2.-)|
           (Ubiquitin-activating enzyme 3) (NEDD8-activating enzyme
           E1C) (Ubiquitin-activating enzyme E1C)
          Length = 462

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +1

Query: 85  DDDTNFHMDLISGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYK 264
           D D   H+  +   +  RA  ++I  V     + +  RIIPA+A++ A+       E++K
Sbjct: 270 DGDDPKHIQWVYQKSLERAAEFNITGVTYRLTQGVVKRIIPAVASTNAVIAAACATEVFK 329

Query: 265 VIAGEH-PVEDY 297
           +    + P+ +Y
Sbjct: 330 IATSAYVPLNNY 341

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>PUM_DROME (P25822) Maternal protein pumilio|
          Length = 1533

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +3

Query: 81  EG*RHQLSHGSNIRASKHACKELQHPRSRQAEGQVHRRQDHPSHRNLNRNGHRA 242
           +G  H L  G N   + +    +QHP  +Q + Q  ++Q HP   N N   H A
Sbjct: 236 QGHPHHLMGGGNGLGNGNGLG-IQHPGQQQQQQQQQQQQQHPGQYNANLLNHAA 288

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>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +3

Query: 96  QLSHGSNIRASKHACKELQHPRS-RQAEGQVHRRQDHPSHRNLNRNGHRARVPRAVQGHR 272
           ++S   N +  +   KE    RS  +++ +   R   PSH    R  HR+R  R     R
Sbjct: 257 EISPERNSKKEREKEKEKTRQRSPTRSKSRSRSRSRSPSHSRPRRR-HRSRSRRRPSPRR 315

Query: 273 R*APRRGLPQHIREPGP 323
           R +PRR  P     P P
Sbjct: 316 RPSPRRRTPPRRMPPPP 332

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>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 14/94 (14%)
 Frame = +3

Query: 90  RHQLSHGSNIRASKHACKELQHPRSRQAEGQVHRRQDH-------PSHRNLNRN------ 230
           R Q    S+   S  + ++ +  RS    G+V RR+ H       PS R   +       
Sbjct: 486 RRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRMQ 545

Query: 231 -GHRARVPRAVQGHRR*APRRGLPQHIREPGPAP 329
            G R + P    G RR +P     +  R P PAP
Sbjct: 546 MGKRWQSPVTKSGRRRRSPSPPPTRRRRSPSPAP 579



 Score = 28.9 bits (63), Expect = 6.4
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
 Frame = +3

Query: 123 ASKHACKELQHPRSR-QAEGQVHRRQDHPSH---RNLNRNGHRARVP-RAVQGHRR*APR 287
           + K   KE   PRSR +++ +   R   PSH   R  +R+  R+  P R     RR +PR
Sbjct: 265 SKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPR 324

Query: 288 RGLPQHIREPGP 323
           R  P     P P
Sbjct: 325 RRTPPRRMPPPP 336

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>KLEG1_ECOLI (Q52282) Putative protein kleG|
          Length = 87

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 10/50 (20%)
 Frame = +2

Query: 314 TWPCPSSRWPSQ------FHRRS*STRR-RAG-PCGT--GGPSRATSPWL 433
           +WPC +  WPS         RR  S RR RAG PC T   GP  A + W+
Sbjct: 12  SWPCSAPPWPSSRTGWACLPRRCASRRRWRAGRPCSTTRTGPRFARARWI 61

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>RPOC_PELUB (Q4FLL3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1389

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -1

Query: 441  QELSQGEVALDGPPVPHGPARLLVLHDL 358
            +++ +GE  LDG P+PH   R+L + DL
Sbjct: 1194 EKIKKGEYLLDGQPLPHDILRILGIKDL 1221

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>RPOC_NITOC (Q3J8Q8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1403

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 441  QELSQGEVALDGPPVPHGPARLLVLHDLRW 352
            + + +GE  +DGPPVPH   RL  + +L +
Sbjct: 1201 EHVEKGEAIVDGPPVPHDILRLRGVEELTY 1230

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>CWC25_EMENI (Q5B0I1) Pre-mRNA-splicing factor cwc25|
          Length = 415

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +3

Query: 150 QHPRSRQAEGQVHRRQD----HPSHRNLNRNGHRARVPRAVQGHRR 275
           +H    +  G  HRR      H SHR+  R+  R+R PR  +  RR
Sbjct: 172 RHQERERERGHRHRRDSGNDSHRSHRHRRRSRSRSRSPRVEKDDRR 217

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>CWC25_ASPFU (Q4X1D7) Pre-mRNA-splicing factor cwc25|
          Length = 447

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 23/80 (28%), Positives = 33/80 (41%)
 Frame = +3

Query: 141 KELQHPRSRQAEGQVHRRQDHPSHRNLNRNGHRARVPRAVQGHRR*APRRGLPQHIREPG 320
           ++  H RSR  +   HR   H SHR      HR+R P +     R   +RG  +  R+  
Sbjct: 189 RDRSHRRSRHEDEDAHRSHRHRSHR------HRSRSPLSPDRSDR---KRGDDRDYRD-- 237

Query: 321 PAPLLDGRASSTEGHEAQGD 380
                D R     GH+ + D
Sbjct: 238 ERDRRDDRRDEHRGHDRRDD 257

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>YFRD_SCHPO (Q9UT43) Putative phospholipid-transporting ATPase C821.13c (EC|
           3.6.3.1)
          Length = 1562

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 277 EHPVEDYRNTFVNLALPLFSMAEPVPPKVMKHKETSWTV 393
           E P++D   T    A P+F+   P+PP+ +K +   +T+
Sbjct: 144 EIPLDDIEPTSPREASPVFNGRPPIPPEFLKSRHKEFTI 182

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>IF2_COREF (Q8FPA7) Translation initiation factor IF-2|
          Length = 964

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +3

Query: 279 APR-RGLPQHIREPGPAPLLDGRASSTEGHEAQGDELDRVGPVVRQGQPHPG*AP 440
           APR   +P+ + +PGP P    RA     +       DR GP    G P PG  P
Sbjct: 162 APRPNAMPRPMAKPGPKP--GARAPRVANNPFSTGAADRPGPRPGGGGPRPGGGP 214

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>GLGB_STRAU (P52980) 1,4-alpha-glucan branching enzyme (EC 2.4.1.18) (Glycogen|
           branching enzyme) (BE)
           (1,4-alpha-D-glucan:1,4-alpha-D-glucan
           6-glucosyl-transferase)
          Length = 764

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
 Frame = +3

Query: 192 RQDHPSHRNLNRNGHRARVPRAVQGHRR*APRRGLPQHIREPGPAPLLDGRASSTEG--- 362
           RQ  P+ R+  +       P A +G R    RR  P H   P PA   + RA   EG   
Sbjct: 5   RQPSPTVRD--KAAPEPAAPAAPKGARAPRARRAAPPHGVRPAPALAAEERARLLEGRHH 62

Query: 363 --HEAQGDELDRVGPVVRQGQPH 425
             H   G    R G   R  +P+
Sbjct: 63  DPHAVLGARTQRGGVAFRVLRPY 85

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>RIMS2_RAT (Q9JIS1) Regulating synaptic membrane exocytosis protein 2|
           (Rab3-interacting molecule 2) (RIM 2)
          Length = 1555

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 159 RSRQAEGQVHRRQDHPSHRNLNRNGHR 239
           R  Q E Q +   DH ++R+ NR GHR
Sbjct: 276 RRSQREPQFYEEPDHLNYRDSNRRGHR 302

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>FABH_ARATH (P49243) 3-oxoacyl-[acyl-carrier-protein] synthase III, chloroplast|
           precursor (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase III)
           (KAS III)
          Length = 404

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 5/33 (15%)
 Frame = -3

Query: 178 PSACRLLGCCSSLHACL-----LARILDPCESW 95
           PS C+L+GC S++ + L     LA+I+D  + W
Sbjct: 67  PSGCKLIGCGSAVPSLLISNDDLAKIVDTNDEW 99

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>CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor|
          Length = 1840

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 456  VGEPLQELSQGEVALDGPPVPHGP 385
            +GEP Q+ S+G+    GPP P GP
Sbjct: 1163 IGEPGQKGSKGDKGEQGPPGPTGP 1186

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>CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor|
          Length = 1840

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 456  VGEPLQELSQGEVALDGPPVPHGP 385
            +GEP Q+ S+G+    GPP P GP
Sbjct: 1163 IGEPGQKGSKGDKGEQGPPGPTGP 1186

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>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
 Frame = +3

Query: 141 KELQHPRSR-QAEGQVHRRQDHPSH---RNLNRNGHRARVP-RAVQGHRR*APRRGLPQH 305
           KE   PRSR +++ +   R   PSH   R  +R+  R+  P R     RR +PRR  P  
Sbjct: 269 KEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPR 328

Query: 306 IREPGP 323
              P P
Sbjct: 329 RMPPPP 334

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>LPXK_SILPO (Q5LMW7) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A|
           4'-kinase)
          Length = 333

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 139 ARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVIAGEHPVEDYRNTF-VN 315
           A++ SI  VD  +  F  GR IPA      +ATGL   +L   +      E +R+T+   
Sbjct: 152 AKDLSIVVVDAAQG-FGNGRCIPAGPLREPVATGLARADLVLALGDAQAQEQFRDTWGAA 210

Query: 316 LALPL 330
           L++PL
Sbjct: 211 LSVPL 215

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>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor|
          Length = 1838

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 456  VGEPLQELSQGEVALDGPPVPHGP 385
            +GEP Q+ S+G+    GPP P GP
Sbjct: 1161 IGEPGQKGSKGDKGEQGPPGPTGP 1184

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>CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor|
          Length = 1838

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 456  VGEPLQELSQGEVALDGPPVPHGP 385
            +GEP Q+ S+G+    GPP P GP
Sbjct: 1161 IGEPGQKGSKGDKGEQGPPGPTGP 1184

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>RADA_TREPA (O83985) DNA repair protein radA homolog (DNA repair protein sms|
           homolog)
          Length = 455

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = -2

Query: 272 AMTLYSSRHTSPV----AIAVEVAMAGMILPAMNLAFSLSTS 159
           AM LYS+R  +PV    A   EV+++G I P   L   L T+
Sbjct: 371 AMALYSARQNTPVKTNAAFIGEVSLSGEIRPVRRLKTRLKTA 412

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>DXS_PROMP (Q7V1G6) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)|
           (1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
           (DXPS)
          Length = 637

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -1

Query: 324 QGQVHECVAVVLDGVLTG 271
           +G+ H+CVAV+ DG LTG
Sbjct: 132 KGEDHKCVAVIGDGALTG 149

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>PTRB_MORLA (Q59536) Protease 2 (EC 3.4.21.83) (Protease II) (Oligopeptidase B)|
          Length = 690

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 19/81 (23%), Positives = 35/81 (43%)
 Frame = +1

Query: 97  NFHMDLISGLANMRARNYSIPEVDKLKAKFIAGRIIPAIATSTAMATGLVCLELYKVIAG 276
           N   D I+   ++  +NY+ P     +     G ++ A+A            EL+KVI  
Sbjct: 505 NTFTDFIAAAKHLIDQNYTSPTKMAARGGSAGGLLVGAVANMAG--------ELFKVIVP 556

Query: 277 EHPVEDYRNTFVNLALPLFSM 339
             P  D   T ++ ++PL ++
Sbjct: 557 AVPFVDVVTTMLDTSIPLTTL 577

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>MOT3_RAT (O70461) Monocarboxylate transporter 3 (MCT 3)|
          Length = 492

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 21/73 (28%), Positives = 31/73 (42%)
 Frame = +3

Query: 165 RQAEGQVHRRQDHPSHRNLNRNGHRARVPRAVQGHRR*APRRGLPQHIREPGPAPLLDGR 344
           R AEG     +D  + R+          P +++     +PR G P+   E    P LD  
Sbjct: 421 RSAEGGASDPEDVEAERDSEPMPASTEEPGSLEALEVLSPRAGSPEQEPEEEAVPELD-- 478

Query: 345 ASSTEGHEAQGDE 383
             S  GHEA+G +
Sbjct: 479 HESIGGHEARGQK 491

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>MOT3_MOUSE (O35308) Monocarboxylate transporter 3 (MCT 3) (Proton-coupled|
           monocarboxylate transporter 3)
          Length = 492

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 21/73 (28%), Positives = 31/73 (42%)
 Frame = +3

Query: 165 RQAEGQVHRRQDHPSHRNLNRNGHRARVPRAVQGHRR*APRRGLPQHIREPGPAPLLDGR 344
           R AEG     +D  + R+          P +++     +PR G P+   E    P LD  
Sbjct: 421 RSAEGGASDPEDVEAERDSEPMPASTEEPGSLEALEVLSPRAGSPEQEPEEEAVPELD-- 478

Query: 345 ASSTEGHEAQGDE 383
             S  GHEA+G +
Sbjct: 479 HESIGGHEARGQK 491

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>FTSKL_DEIRA (Q9RXB5) Hypothetical ftsK-like protein DR0400|
          Length = 980

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 24/72 (33%), Positives = 34/72 (47%)
 Frame = +3

Query: 240 ARVPRAVQGHRR*APRRGLPQHIREPGPAPLLDGRASSTEGHEAQGDELDRVGPVVRQGQ 419
           A VP+ V   R  A  R  P+ +  PGP+P+    AS++  H A  +E          G+
Sbjct: 433 ASVPQMVPTPR--AAARPTPRPVSSPGPSPVPVSPASASVSHAAPWEE-------PAAGR 483

Query: 420 PHPG*APAVVRR 455
           P P  AP+ V R
Sbjct: 484 PAP--APSGVSR 493

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>SYN3_HUMAN (O14994) Synapsin-3 (Synapsin III)|
          Length = 580

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 17/87 (19%)
 Frame = +3

Query: 165 RQAEGQVHRRQDHPSHRNLNRNGHRARVPRAVQGHRR*APRRGLPQHIR----------- 311
           RQA+    +R   PS + L+  G +   P++    ++ +P  G PQ  R           
Sbjct: 443 RQAQSPQPQRSGSPSQQRLSPQGQQPLSPQSGSPQQQRSP--GSPQLSRASSGSSPNQAS 500

Query: 312 EPG------PAPLLDGRASSTEGHEAQ 374
           +PG      P P + GR++S +G E++
Sbjct: 501 KPGATLASQPRPPVQGRSTSQQGEESK 527


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,098,981
Number of Sequences: 219361
Number of extensions: 1380463
Number of successful extensions: 5339
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 4765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5330
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

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