ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet62h11 |
|---|---|
| Clone Library Name | barley_pub |
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 60.8 bits (146), Expect = 2e-09 Identities = 31/65 (47%), Positives = 40/65 (61%) Frame = +3 Query: 255 RVATGRFCNGKLATDITADTLGFTSYPPAYLSPQASGKNLLIGANFASAGSGYYDHTALM 434 RVATGRF NG +A+D A +G PAYL P+ +LL G +FAS G+GY T+ Sbjct: 239 RVATGRFSNGMVASDYLAKYMGVKEIVPAYLDPKIQPNDLLTGVSFASGGAGYNPTTSEA 298 Query: 435 YHAIP 449 +AIP Sbjct: 299 ANAIP 303 Score = 49.3 bits (116), Expect = 5e-06 Identities = 24/59 (40%), Positives = 32/59 (54%) Frame = +1 Query: 145 VPGVFTFGDSTVDIGNNDYLHTLIKADFPPYGRDFPIAWPPGGFATASWPPTSLLIHLG 321 +P VF FGDS D GNN+ L T IK+++ PYG DF G F+ L ++G Sbjct: 202 IPAVFFFGDSVFDTGNNNNLETKIKSNYRPYGMDFKFRVATGRFSNGMVASDYLAKYMG 260
>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)| (Fragment) Length = 449 Score = 50.8 bits (120), Expect = 2e-06 Identities = 22/45 (48%), Positives = 29/45 (64%) Frame = +1 Query: 145 VPGVFTFGDSTVDIGNNDYLHTLIKADFPPYGRDFPIAWPPGGFA 279 +P VF FGDS D GNN+ L T +K ++ PYG DFP+ G F+ Sbjct: 123 IPAVFFFGDSIFDTGNNNNLDTKLKCNYRPYGMDFPMGVATGRFS 167 Score = 49.3 bits (116), Expect = 5e-06 Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 6/66 (9%) Frame = +3 Query: 249 PNRVATGRFCNGKLATDITADTLGFTSYPPAYLSPQASGKN------LLIGANFASAGSG 410 P VATGRF NG++A+D + LG PAY+ + N LL G +FAS G+G Sbjct: 158 PMGVATGRFSNGRVASDYISKYLGVKEIVPAYVDKKLQQNNELQQSDLLTGVSFASGGAG 217 Query: 411 YYDHTA 428 Y T+ Sbjct: 218 YLPQTS 223
>FUCO2_ARATH (Q9FXE5) Alpha-L-fucosidase 2 precursor (EC 3.2.1.51)| (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) Length = 372 Score = 40.0 bits (92), Expect(2) = 5e-05 Identities = 22/47 (46%), Positives = 30/47 (63%) Frame = +3 Query: 267 GRFCNGKLATDITADTLGFTSYPPAYLSPQASGKNLLIGANFASAGS 407 GR+C+G+L D A++LG Y A+L + G N GANFA+AGS Sbjct: 65 GRYCDGRLVIDFIAESLGL-PYLSAFL--DSVGSNFSHGANFATAGS 108 Score = 25.4 bits (54), Expect(2) = 5e-05 Identities = 13/34 (38%), Positives = 15/34 (44%) Frame = +1 Query: 148 PGVFTFGDSTVDIGNNDYLHTLIKADFPPYGRDF 249 P +F FGDS D G L PP+G F Sbjct: 29 PAIFNFGDSNSDTGG---LSAAFGQAGPPHGSSF 59
>EST_HEVBR (Q7Y1X1) Esterase precursor (EC 3.1.1.-) (Early nodule-specific| protein homolog) (Latex allergen Hev b 13) Length = 391 Score = 35.4 bits (80), Expect(2) = 6e-04 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 2/51 (3%) Frame = +3 Query: 261 ATGRFCNGKLATDITADTLGFTSYPPAYLSPQAS--GKNLLIGANFASAGS 407 +TGR+ +G+L D A+ S+ YLSP S G N GA+FA+AGS Sbjct: 67 STGRYSDGRLIIDFIAE-----SFNLPYLSPYLSSLGSNFKHGADFATAGS 112 Score = 26.2 bits (56), Expect(2) = 6e-04 Identities = 13/34 (38%), Positives = 15/34 (44%) Frame = +1 Query: 148 PGVFTFGDSTVDIGNNDYLHTLIKADFPPYGRDF 249 P +F FGDS D G + PPYG F Sbjct: 33 PAIFNFGDSNSDTGGKAAAFYPLN---PPYGETF 63
>INO80_GIBZE (Q4IL82) Putative DNA helicase INO80 (EC 3.6.1.-)| Length = 1904 Score = 35.8 bits (81), Expect = 0.056 Identities = 19/49 (38%), Positives = 22/49 (44%) Frame = +3 Query: 84 PVAPGYPPPDGDSWRGGAAACARGLHVRRLDGRHRQQRLPPHPHQGGLP 230 PVAP PPP G + + A GLH RH Q P H H+ P Sbjct: 135 PVAPALPPPVGINSSSSPGSSAAGLH-----QRHHQPGAPAHQHRAAPP 178
>SKEL_DROME (Q9GPJ1) Protein skeletor| Length = 743 Score = 31.6 bits (70), Expect = 1.0 Identities = 37/137 (27%), Positives = 51/137 (37%), Gaps = 18/137 (13%) Frame = +3 Query: 105 PPDGDSWRGGAAACARGLH------VRRLDGRHRQQRL-----------PPHPHQGGLPS 233 P G+S R G A ARGL R DG + L P HP+Q +P+ Sbjct: 26 PAAGESHRRGTGASARGLRRRGVRTARNQDGIRAAEALEESLLRNPNLNPNHPNQNPIPN 85 Query: 234 LRQGLPNRVATGRFCNGKLATDIT-ADTLGFTSYPPAYLSPQASGKNLLIGANFASAGSG 410 Q PN T ++ T A TL + AY SP A+ + + +AG Sbjct: 86 PHQ-KPNVTPTEISSRPEILLGETHAHTLNASPSASAYPSPSATLPSANLKLPILAAGPH 144 Query: 411 YYDHTALMYHAIPFSQH 461 H ++ QH Sbjct: 145 LIHHPPHLHRLHHQPQH 161
>P2RX2_RAT (P49653) P2X purinoceptor 2 (ATP receptor) (P2X2) (Purinergic| receptor) Length = 472 Score = 31.2 bits (69), Expect = 1.4 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%) Frame = +3 Query: 183 HRQQRLPPHPHQGGLPSLRQG--LPNRVATGRFCNGKLATDITADTLG 320 H Q PP P G P+L +G LP V + R C+ T+ DTLG Sbjct: 397 HYSQDQPPSPPSGEGPTLGEGAELPLAVQSPRPCSISALTEQVVDTLG 444
>TAL1_HUMAN (P17542) T-cell acute lymphocytic leukemia-1 protein (TAL-1| protein) (Stem cell protein) (T-cell leukemia/lymphoma-5 protein) Length = 331 Score = 30.8 bits (68), Expect = 1.8 Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 6/110 (5%) Frame = +3 Query: 105 PPDGDSWRGGAAACARGLHVRRLDGRHR----QQRLPPHPHQGGLPSLRQGLPNRVATGR 272 P G + GGAA +G + RHR + PP P P+ Sbjct: 60 PGGGPAGGGGAARDLKGRDAATAEARHRVPTTELCRPPGPAPAPAPA------------- 106 Query: 273 FCNGKLATDITADTLGFTSYPPAYLSPQASGKNLL--IGANFASAGSGYY 416 + ++ D PPA +P A G+ LL + AS GSG++ Sbjct: 107 ----SVTAELPGDGRMVQLSPPALAAPAAPGRALLYSLSQPLASLGSGFF 152
>CI066_HUMAN (Q5T8R8) Protein C9orf66| Length = 295 Score = 30.8 bits (68), Expect = 1.8 Identities = 29/114 (25%), Positives = 40/114 (35%), Gaps = 18/114 (15%) Frame = +3 Query: 87 VAPGYPPPDGDSWRGGAAACARGLHVRRLDGRHRQQRL------------------PPHP 212 ++P + P + GGA RG RRL + L PP P Sbjct: 15 LSPFWDPATCKNLEGGAGEVVRGRDPRRLRTSRSTEILGEDLAGPSAGAAARPAAPPPQP 74 Query: 213 HQGGLPSLRQGLPNRVATGRFCNGKLATDITADTLGFTSYPPAYLSPQASGKNL 374 + G P LR+ P T + + LG S P + S SG+NL Sbjct: 75 REPGAPGLRRAPPR-------------TRMDSSGLGPCSEAPLHTSAGLSGRNL 115
>BTBDC_HUMAN (Q8IY92) BTB/POZ domain-containing protein 12| Length = 1151 Score = 30.0 bits (66), Expect = 3.1 Identities = 18/62 (29%), Positives = 25/62 (40%) Frame = +3 Query: 87 VAPGYPPPDGDSWRGGAAACARGLHVRRLDGRHRQQRLPPHPHQGGLPSLRQGLPNRVAT 266 + P PPP S +C + DGR + R P PH GG P P+ ++ Sbjct: 628 IRPQTPPPQTPS------SCLTPVSPGTSDGRRQGHRSPSRPHPGGHPHSSPLAPHPISG 681 Query: 267 GR 272 R Sbjct: 682 DR 683
>DSCR9_PANTR (P59021) Down syndrome critical region protein 9| Length = 149 Score = 30.0 bits (66), Expect = 3.1 Identities = 22/61 (36%), Positives = 26/61 (42%) Frame = +3 Query: 147 ARGLHVRRLDGRHRQQRLPPHPHQGGLPSLRQGLPNRVATGRFCNGKLATDITADTLGFT 326 +R +R GR LP H QGG P L P R A R + D+TA G T Sbjct: 9 SRARRLRARPGRPSGDSLPYHQLQGGAPRLWSPDPGRPAAYRRAH---VCDVTAPRWGST 65 Query: 327 S 329 S Sbjct: 66 S 66
>DSCR9_HUMAN (P59020) Down syndrome critical region protein 9| Length = 149 Score = 30.0 bits (66), Expect = 3.1 Identities = 22/61 (36%), Positives = 26/61 (42%) Frame = +3 Query: 147 ARGLHVRRLDGRHRQQRLPPHPHQGGLPSLRQGLPNRVATGRFCNGKLATDITADTLGFT 326 +R +R GR LP H QGG P L P R A R + D+TA G T Sbjct: 9 SRARRLRARPGRPSGDSLPYHQLQGGAPRLWSPDPGRPAAYRRAH---VCDVTAPRWGST 65 Query: 327 S 329 S Sbjct: 66 S 66
>PRLB_ACHLY (P27458) Beta-lytic metalloendopeptidase precursor (EC 3.4.24.32)| (Beta-lytic protease) Length = 374 Score = 30.0 bits (66), Expect = 3.1 Identities = 31/112 (27%), Positives = 39/112 (34%), Gaps = 10/112 (8%) Frame = +3 Query: 126 RGGAAACARGLHVRRLDGRHRQQRLPPH----------PHQGGLPSLRQGLPNRVATGRF 275 R AA R +R GR ++R P P QGG LRQG P R A Sbjct: 139 RQSAAGAVRAFRRQRAGGRAARRRRVPAGLRPPVQRTAPGQGGFGPLRQGRPGRAAVSP- 197 Query: 276 CNGKLATDITADTLGFTSYPPAYLSPQASGKNLLIGANFASAGSGYYDHTAL 431 NG L P G + +G + GSG Y ++L Sbjct: 198 -NGLLQ------------------FPFPRGASWHVGGAHTNTGSGNYPMSSL 230
>RENT1_DROME (Q9VYS3) Regulator of nonsense transcripts 1 homolog| Length = 1180 Score = 29.3 bits (64), Expect = 5.2 Identities = 21/91 (23%), Positives = 38/91 (41%), Gaps = 3/91 (3%) Frame = +3 Query: 198 LPP---HPHQGGLPSLRQGLPNRVATGRFCNGKLATDITADTLGFTSYPPAYLSPQASGK 368 +PP + HQ + +++Q + TG F G +T +G ++ P GK Sbjct: 1036 IPPRFYNQHQQAIMAVKQNRAIQQQTGNFSPGNSGPGVTGVGVGRSATPGGNKKTNKLGK 1095 Query: 369 NLLIGANFASAGSGYYDHTALMYHAIPFSQH 461 + + G G + + +A P+SQH Sbjct: 1096 SRVTG---GGTGGAPLTQGSSVCNAAPYSQH 1123
>NKX24_MOUSE (Q9EQM3) Homeobox protein Nkx-2.4 (Homeobox protein NKX2.4)| (Homeobox protein NK-2 homolog D) Length = 354 Score = 28.9 bits (63), Expect = 6.8 Identities = 19/56 (33%), Positives = 26/56 (46%) Frame = +3 Query: 18 PPKIIRDSIKSLS*FCNGG*EVPVAPGYPPPDGDSWRGGAAACARGLHVRRLDGRH 185 PP + + ++ +CNGG G P D RGGAAA A G + D R+ Sbjct: 96 PPGVSQFPHSAMGSYCNGGLG---NMGELPAYTDGMRGGAAAAATGWYGANTDPRY 148
>PO3F3_HUMAN (P20264) POU domain, class 3, transcription factor 3| (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein) Length = 500 Score = 28.9 bits (63), Expect = 6.8 Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 4/55 (7%) Frame = +3 Query: 69 GG*EVPVAPGYPPPDGDSWRGGAAA----CARGLHVRRLDGRHRQQRLPPHPHQG 221 G + P P PPP G +GGA LH R G PP PHQG Sbjct: 131 GSPQQPPQPPPPPPQGPDVKGGAGRDDLHAGTALHHR---GPPHLGPPPPPPHQG 182
>PO3F3_MOUSE (P31361) POU domain, class 3, transcription factor 3| (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein) Length = 495 Score = 28.9 bits (63), Expect = 6.8 Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 4/55 (7%) Frame = +3 Query: 69 GG*EVPVAPGYPPPDGDSWRGGAAA----CARGLHVRRLDGRHRQQRLPPHPHQG 221 G + P P PPP G +GGA LH R G PP PHQG Sbjct: 128 GSPQQPPQPPPPPPQGPDVKGGAGREDLHAGTALHHR---GPPHLGPPPPPPHQG 179
>RAIN_HUMAN (Q5U651) Ras-interacting protein 1 (Rain)| Length = 963 Score = 28.9 bits (63), Expect = 6.8 Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 6/52 (11%) Frame = +3 Query: 81 VPVAPGYPPPDGDSWRGGAAACARGLHVR------RLDGRHRQQRLPPHPHQ 218 +P PG PP G W C RGL R LDGR R P + Sbjct: 503 LPARPGATPP-GPGWAFSCRLCGRGLQERGEALAAYLDGREPVLRFRPREEE 553
>RAIN_MOUSE (Q3U0S6) Ras-interacting protein 1 (Rain)| Length = 961 Score = 28.9 bits (63), Expect = 6.8 Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 6/52 (11%) Frame = +3 Query: 81 VPVAPGYPPPDGDSWRGGAAACARGLHVR------RLDGRHRQQRLPPHPHQ 218 +P PG PP G W C RGL R LDGR R P + Sbjct: 497 LPARPGAAPP-GPGWAFSCRLCGRGLQERGEALAAYLDGREPVLRFRPREEE 547
>ADD4_STRCO (Q9L0L6) Probable adenosine deaminase 4 (EC 3.5.4.4) (Adenosine| aminohydrolase 4) Length = 343 Score = 28.9 bits (63), Expect = 6.8 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = +2 Query: 326 KLPAGISQPAGVGEEPSDRCQLRVGWIRLLRSHGAYVSC 442 +LP +++ G GE P R GW R R + A SC Sbjct: 38 RLPETLTEALGRGESPKLRATDERGWFRFQRLYDAARSC 76
>DXS1_STRCO (Q9X7W3) 1-deoxy-D-xylulose-5-phosphate synthase 1 (EC 2.2.1.7)| (1-deoxyxylulose-5-phosphate synthase 1) (DXP synthase 1) (DXPS 1) Length = 656 Score = 28.9 bits (63), Expect = 6.8 Identities = 14/52 (26%), Positives = 25/52 (48%) Frame = -2 Query: 395 REVGTDQKVLPRRLRAEICRRVACEPKCISSDVGGQLAVAKPPGGHAIGKSL 240 R G ++ L RAE+ + P ++ + LA+A+P G A G ++ Sbjct: 583 RRFGIPEQFLAHAKRAEVLADIGLTPVDVAGRIAASLALAEPAGDRAGGPAV 634
>TIM14_YARLI (Q6CEU0) Mitochondrial import inner membrane translocase subunit| TIM14 (Presequence translocated-associated motor subunit PAM18) Length = 148 Score = 28.5 bits (62), Expect = 8.9 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +3 Query: 153 GLHVRRLDGRHRQQRLPPHPHQGGLP 230 GL + +L G+HR+ L HP +GG P Sbjct: 103 GLTMNKLKGQHRKIMLLNHPDRGGSP 128
>TRXB_ECOLI (P0A9P4) Thioredoxin reductase (EC 1.8.1.9) (TRXR)| Length = 320 Score = 28.5 bits (62), Expect = 8.9 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = +1 Query: 112 TGIHGGEAQPLVPGVFTFGD 171 +GIHG Q +PGVF GD Sbjct: 267 SGIHGNATQTSIPGVFAAGD 286
>TRXB_ECO57 (P0A9P5) Thioredoxin reductase (EC 1.8.1.9) (TRXR)| Length = 320 Score = 28.5 bits (62), Expect = 8.9 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = +1 Query: 112 TGIHGGEAQPLVPGVFTFGD 171 +GIHG Q +PGVF GD Sbjct: 267 SGIHGNATQTSIPGVFAAGD 286 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,205,008 Number of Sequences: 219361 Number of extensions: 1608510 Number of successful extensions: 4771 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4494 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4756 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
