ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet62h01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464783.1| Oryza sativa (japonica cultivar-group), mRNA 92 1e-15
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 92 1e-15
3dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic D... 92 1e-15
4dbj|AK105482.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 1e-15
5gb|AC025449.6| Homo sapiens chromosome 5 clone CTD-2124B8, compl... 44 0.24
6dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 44 0.24
7emb|AJ332171.1|HSA332171 Homo sapiens genomic sequence surroundi... 44 0.24
8gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 42 0.96
9ref|XM_483123.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.96
10gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 0.96
11dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.96
12gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 0.96
13dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 0.96
14dbj|AP004762.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.96
15dbj|AK110788.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.96
16ref|NM_209509.1| Eremothecium gossypii ADR060Cp (ADR060C), mRNA 42 0.96
17ref|XM_512489.1| PREDICTED: Pan troglodytes similar to GTP bindi... 40 3.8
18ref|XM_480875.1| Oryza sativa (japonica cultivar-group), mRNA 40 3.8
19ref|NM_020959.1| Homo sapiens transmembrane protein 16H (TMEM16H... 40 3.8
20ref|NM_030188.2| Mus musculus RIKEN cDNA 4930506L13 gene (493050... 40 3.8
21gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, compl... 40 3.8
22gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 3.8
23gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.8
24gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 3.8
25gb|BC004773.1| Mus musculus RIKEN cDNA 4930506L13 gene, mRNA (cD... 40 3.8
26gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 3.8
27gb|DQ356948.1| Crocodilepox virus, complete genome 40 3.8
28gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 3.8
29ref|XM_001002891.1| PREDICTED: Mus musculus similar to F54C1.5a,... 40 3.8
30ref|XM_001002900.1| PREDICTED: Mus musculus similar to F54C1.5a,... 40 3.8
31ref|XM_001002878.1| PREDICTED: Mus musculus RIKEN cDNA 2510042P0... 40 3.8
32ref|XM_001002885.1| PREDICTED: Mus musculus RIKEN cDNA 2510042P0... 40 3.8
33ref|XM_896521.2| PREDICTED: Mus musculus similar to F54C1.5a, tr... 40 3.8
34ref|XM_485011.4| PREDICTED: Mus musculus similar to F54C1.5a, tr... 40 3.8
35ref|XM_001003944.1| PREDICTED: Mus musculus RIKEN cDNA 2510042P0... 40 3.8
36ref|XM_485010.3| PREDICTED: Mus musculus RIKEN cDNA 2510042P03 g... 40 3.8
37ref|XM_922236.1| PREDICTED: Mus musculus similar to F54C1.5a, tr... 40 3.8
38ref|XM_911999.1| PREDICTED: Mus musculus similar to F54C1.5a, tr... 40 3.8
39ref|XM_986297.1| PREDICTED: Mus musculus RIKEN cDNA 2510042P03 g... 40 3.8
40ref|XM_911984.2| PREDICTED: Mus musculus RIKEN cDNA 2510042P03 g... 40 3.8
41emb|AL590400.5| Human DNA sequence from clone RP11-569I12 on chr... 40 3.8
42emb|BX009178.1|CNS08F8U Single read from an extremity of a full-... 40 3.8
43emb|BX842583.1| Mycobacterium tuberculosis H37Rv complete genome... 40 3.8
44emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 3.8
45emb|BX248346.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 3.8
46emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete ... 40 3.8
47gb|AC151469.2| Xenopus tropicalis clone ISB1-81I4, complete sequ... 40 3.8
48gb|AC096887.2| Homo sapiens chromosome 3 clone RP11-5O17, comple... 40 3.8
49gb|AC010463.6| Homo sapiens chromosome 19 clone CTD-2278I10, com... 40 3.8
50gb|AC023716.4| Drosophila melanogaster X BAC RP98-45E21 (Roswell... 40 3.8
51gb|AC023694.4| Drosophila melanogaster X BAC RP98-18B11 (Roswell... 40 3.8
52dbj|AK147134.1| Mus musculus 17 days embryo kidney cDNA, RIKEN f... 40 3.8
53dbj|AK029535.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 3.8
54gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.8
55dbj|AK019670.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 3.8
56dbj|AK045096.1| Mus musculus 9.5 days embryo parthenogenote cDNA... 40 3.8
57gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 3.8
58dbj|AK011097.1| Mus musculus 13 days embryo liver cDNA, RIKEN fu... 40 3.8
59dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
60dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
61gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.8
62dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 3.8
63emb|AL772341.12| Mouse DNA sequence from clone RP23-179N22 on ch... 40 3.8
64dbj|AP004705.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.8
65dbj|AK110473.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
66dbj|AK069936.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
67dbj|AK069569.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
68gb|AE003449.2| Drosophila melanogaster chromosome X, section 33 ... 40 3.8
69emb|AL773533.12| Mouse DNA sequence from clone RP23-159H12 on ch... 40 3.8
70gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 3.8
71gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 3.8
72emb|AJ748832.1| Streptomyces lividus lividomycin biosynthesis ge... 40 3.8
73dbj|AB062134.1| Arthrobacter sp. K-1 bff gene for beta-fructofur... 40 3.8
74dbj|AB046843.2| Homo sapiens mRNA for KIAA1623 protein, partial cds 40 3.8 
>ref|XM_464783.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1435

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 58/62 (93%)
 Strand = Plus / Plus

                                                                       
Query: 181 tccgcctcgacccgcgggtcgtgcgcaggagcggcaacgaggtgctgtggcagctgccgc 240
           ||||||||||| || |||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 226 tccgcctcgacgcgagggtcgagcggaggagcggcaacgaggtgctgtggcagctgccgc 285

             
Query: 241 cg 242
           ||
Sbjct: 286 cg 287



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                           
Query: 107 ctgcgcgctgatcctcctcgccacggccctcctcctcccgcgcgctcc 154
           |||||||||| ||||||||||||| | |||||||||||||||||||||
Sbjct: 131 ctgcgcgctggtcctcctcgccaccgtcctcctcctcccgcgcgctcc 178
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 58/62 (93%)
 Strand = Plus / Plus

                                                                           
Query: 181     tccgcctcgacccgcgggtcgtgcgcaggagcggcaacgaggtgctgtggcagctgccgc 240
               ||||||||||| || |||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 7320772 tccgcctcgacgcgagggtcgagcggaggagcggcaacgaggtgctgtggcagctgccgc 7320831

                 
Query: 241     cg 242
               ||
Sbjct: 7320832 cg 7320833



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                               
Query: 107     ctgcgcgctgatcctcctcgccacggccctcctcctcccgcgcgctcc 154
               |||||||||| ||||||||||||| | |||||||||||||||||||||
Sbjct: 7320677 ctgcgcgctggtcctcctcgccaccgtcctcctcctcccgcgcgctcc 7320724
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>dbj|AP005756.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0035N08
          Length = 136267

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 58/62 (93%)
 Strand = Plus / Plus

                                                                         
Query: 181   tccgcctcgacccgcgggtcgtgcgcaggagcggcaacgaggtgctgtggcagctgccgc 240
             ||||||||||| || |||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 96580 tccgcctcgacgcgagggtcgagcggaggagcggcaacgaggtgctgtggcagctgccgc 96639

               
Query: 241   cg 242
             ||
Sbjct: 96640 cg 96641



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                             
Query: 107   ctgcgcgctgatcctcctcgccacggccctcctcctcccgcgcgctcc 154
             |||||||||| ||||||||||||| | |||||||||||||||||||||
Sbjct: 96485 ctgcgcgctggtcctcctcgccaccgtcctcctcctcccgcgcgctcc 96532
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>dbj|AK105482.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-127-B03, full
           insert sequence
          Length = 1435

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 58/62 (93%)
 Strand = Plus / Plus

                                                                       
Query: 181 tccgcctcgacccgcgggtcgtgcgcaggagcggcaacgaggtgctgtggcagctgccgc 240
           ||||||||||| || |||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 226 tccgcctcgacgcgagggtcgagcggaggagcggcaacgaggtgctgtggcagctgccgc 285

             
Query: 241 cg 242
           ||
Sbjct: 286 cg 287



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                           
Query: 107 ctgcgcgctgatcctcctcgccacggccctcctcctcccgcgcgctcc 154
           |||||||||| ||||||||||||| | |||||||||||||||||||||
Sbjct: 131 ctgcgcgctggtcctcctcgccaccgtcctcctcctcccgcgcgctcc 178
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>gb|AC025449.6| Homo sapiens chromosome 5 clone CTD-2124B8, complete sequence
          Length = 199036

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 137    cctcctcccgcgcgctcccctc 158
              ||||||||||||||||||||||
Sbjct: 102400 cctcctcccgcgcgctcccctc 102421
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 236     gccgccgggcccgccgcgcgcc 257
               ||||||||||||||||||||||
Sbjct: 1256432 gccgccgggcccgccgcgcgcc 1256411
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>emb|AJ332171.1|HSA332171 Homo sapiens genomic sequence surrounding NotI site, clone
           NL6-GP14RS
          Length = 767

 Score = 44.1 bits (22), Expect = 0.24
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 137 cctcctcccgcgcgctcccctc 158
           ||||||||||||||||||||||
Sbjct: 34  cctcctcccgcgcgctcccctc 13
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 137     cctcctcccgcgcgctcccctcgcc 161
               |||||||||| ||||||||||||||
Sbjct: 3217450 cctcctcccgggcgctcccctcgcc 3217474
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>ref|XM_483123.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1073

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 94  tcctgatcgccgcctgcgcgctgatcctc 122
           |||||||||||||| ||||| ||||||||
Sbjct: 407 tcctgatcgccgccggcgcggtgatcctc 435
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>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV,
              complete sequence
          Length = 1466886

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 235    tgccgccgggcccgccgcgcg 255
              |||||||||||||||||||||
Sbjct: 813477 tgccgccgggcccgccgcgcg 813457
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 94       tcctgatcgccgcctgcgcgctgatcctc 122
                |||||||||||||| ||||| ||||||||
Sbjct: 24382814 tcctgatcgccgccggcgcggtgatcctc 24382786



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 243     ggcccgccgcgcgccgacgtgttc 266
               |||||||||||||||| |||||||
Sbjct: 8378555 ggcccgccgcgcgccgccgtgttc 8378578
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 221    ggtgctgtggcagctgccgccgggc 245
              ||||||||||||||| |||||||||
Sbjct: 904410 ggtgctgtggcagctcccgccgggc 904386
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 96      ctgatcgccgcctgcgcgctg 116
               |||||||||||||||||||||
Sbjct: 6555286 ctgatcgccgcctgcgcgctg 6555306
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>dbj|AP004762.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0686H11
          Length = 135273

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 94     tcctgatcgccgcctgcgcgctgatcctc 122
              |||||||||||||| ||||| ||||||||
Sbjct: 123118 tcctgatcgccgccggcgcggtgatcctc 123090
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>dbj|AK110788.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-C09, full
           insert sequence
          Length = 1073

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 94  tcctgatcgccgcctgcgcgctgatcctc 122
           |||||||||||||| ||||| ||||||||
Sbjct: 407 tcctgatcgccgccggcgcggtgatcctc 435
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>ref|NM_209509.1| Eremothecium gossypii ADR060Cp (ADR060C), mRNA
          Length = 735

 Score = 42.1 bits (21), Expect = 0.96
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 235 tgccgccgggcccgccgcgcg 255
           |||||||||||||||||||||
Sbjct: 426 tgccgccgggcccgccgcgcg 446
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>ref|XM_512489.1| PREDICTED: Pan troglodytes similar to GTP binding protein 3
           (mitochondrial) isoform V; mitochondrial GTP binding
           protein (LOC455835), mRNA
          Length = 1263

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 135 ctcctcctcccgcgcgctcc 154
           ||||||||||||||||||||
Sbjct: 36  ctcctcctcccgcgcgctcc 17
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>ref|XM_480875.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 906

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 243 ggcccgccgcgcgccgacgtgttc 266
           |||||||||||||||| |||||||
Sbjct: 578 ggcccgccgcgcgccgccgtgttc 555
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>ref|NM_020959.1| Homo sapiens transmembrane protein 16H (TMEM16H), mRNA
          Length = 4150

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 135 ctcctcctcccgcgcgctcc 154
           ||||||||||||||||||||
Sbjct: 61  ctcctcctcccgcgcgctcc 80
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>ref|NM_030188.2| Mus musculus RIKEN cDNA 4930506L13 gene (4930506L13Rik), mRNA
          Length = 3525

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  ctcccgcagccgcgcagggc 88
           ||||||||||||||||||||
Sbjct: 156 ctcccgcagccgcgcagggc 175
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>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome
          Length = 943016

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 233    gctgccgccgggcccgccgc 252
              ||||||||||||||||||||
Sbjct: 859574 gctgccgccgggcccgccgc 859593
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 86      ggccgccgtcctgatcgccgcctgcgcg 113
               ||||||||||||| ||| ||||||||||
Sbjct: 3213047 ggccgccgtcctgctcggcgcctgcgcg 3213074
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>gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02,
             complete sequence
          Length = 131860

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 132   gccctcctcctcccgcgcgc 151
             ||||||||||||||||||||
Sbjct: 75063 gccctcctcctcccgcgcgc 75082
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 100     tcgccgcctgcgcgctgatc 119
               ||||||||||||||||||||
Sbjct: 4029971 tcgccgcctgcgcgctgatc 4029990
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>gb|BC004773.1| Mus musculus RIKEN cDNA 4930506L13 gene, mRNA (cDNA clone MGC:7152
           IMAGE:3256753), complete cds
          Length = 2660

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  ctcccgcagccgcgcagggc 88
           ||||||||||||||||||||
Sbjct: 148 ctcccgcagccgcgcagggc 167
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 86     ggccgccgtcctgatcgccgcctgcgcg 113
              ||||||||||||| ||| ||||||||||
Sbjct: 768085 ggccgccgtcctgctcggcgcctgcgcg 768058
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>gb|DQ356948.1| Crocodilepox virus, complete genome
          Length = 190054

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 236    gccgccgggcccgccgcgcg 255
              ||||||||||||||||||||
Sbjct: 134628 gccgccgggcccgccgcgcg 134609
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 97      tgatcgccgcctgcgcgctg 116
               ||||||||||||||||||||
Sbjct: 3796299 tgatcgccgcctgcgcgctg 3796318
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>ref|XM_001002891.1| PREDICTED: Mus musculus similar to F54C1.5a, transcript variant 1
           (LOC620631), mRNA
          Length = 1927

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  ctcccgcagccgcgcagggc 88
           ||||||||||||||||||||
Sbjct: 136 ctcccgcagccgcgcagggc 155
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>ref|XM_001002900.1| PREDICTED: Mus musculus similar to F54C1.5a, transcript variant 2
           (LOC620631), mRNA
          Length = 2008

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  ctcccgcagccgcgcagggc 88
           ||||||||||||||||||||
Sbjct: 136 ctcccgcagccgcgcagggc 155
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>ref|XM_001002878.1| PREDICTED: Mus musculus RIKEN cDNA 2510042P03 gene, transcript
           variant 1 (2510042P03Rik), mRNA
          Length = 2656

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  ctcccgcagccgcgcagggc 88
           ||||||||||||||||||||
Sbjct: 301 ctcccgcagccgcgcagggc 320
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>ref|XM_001002885.1| PREDICTED: Mus musculus RIKEN cDNA 2510042P03 gene, transcript
           variant 2 (2510042P03Rik), mRNA
          Length = 2737

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  ctcccgcagccgcgcagggc 88
           ||||||||||||||||||||
Sbjct: 301 ctcccgcagccgcgcagggc 320
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>ref|XM_896521.2| PREDICTED: Mus musculus similar to F54C1.5a, transcript variant 2
           (LOC620631), mRNA
          Length = 1927

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  ctcccgcagccgcgcagggc 88
           ||||||||||||||||||||
Sbjct: 136 ctcccgcagccgcgcagggc 155
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>ref|XM_485011.4| PREDICTED: Mus musculus similar to F54C1.5a, transcript variant 1
           (LOC620631), mRNA
          Length = 2008

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  ctcccgcagccgcgcagggc 88
           ||||||||||||||||||||
Sbjct: 136 ctcccgcagccgcgcagggc 155
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>ref|XM_001003944.1| PREDICTED: Mus musculus RIKEN cDNA 2510042P03 gene, transcript
           variant 2 (2510042P03Rik), mRNA
          Length = 2656

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  ctcccgcagccgcgcagggc 88
           ||||||||||||||||||||
Sbjct: 301 ctcccgcagccgcgcagggc 320
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>ref|XM_485010.3| PREDICTED: Mus musculus RIKEN cDNA 2510042P03 gene, transcript
           variant 1 (2510042P03Rik), mRNA
          Length = 2737

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  ctcccgcagccgcgcagggc 88
           ||||||||||||||||||||
Sbjct: 301 ctcccgcagccgcgcagggc 320
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>ref|XM_922236.1| PREDICTED: Mus musculus similar to F54C1.5a, transcript variant 2
           (LOC633909), mRNA
          Length = 1914

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  ctcccgcagccgcgcagggc 88
           ||||||||||||||||||||
Sbjct: 123 ctcccgcagccgcgcagggc 142
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>ref|XM_911999.1| PREDICTED: Mus musculus similar to F54C1.5a, transcript variant 1
           (LOC633909), mRNA
          Length = 1995

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  ctcccgcagccgcgcagggc 88
           ||||||||||||||||||||
Sbjct: 123 ctcccgcagccgcgcagggc 142
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>ref|XM_986297.1| PREDICTED: Mus musculus RIKEN cDNA 2510042P03 gene, transcript
           variant 4 (2510042P03Rik), mRNA
          Length = 2656

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  ctcccgcagccgcgcagggc 88
           ||||||||||||||||||||
Sbjct: 301 ctcccgcagccgcgcagggc 320
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>ref|XM_911984.2| PREDICTED: Mus musculus RIKEN cDNA 2510042P03 gene, transcript
           variant 3 (2510042P03Rik), mRNA
          Length = 2737

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  ctcccgcagccgcgcagggc 88
           ||||||||||||||||||||
Sbjct: 301 ctcccgcagccgcgcagggc 320
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>emb|AL590400.5| Human DNA sequence from clone RP11-569I12 on chromosome 6 Contains the
             5' end of a variant of the FKBP5 gene for FK506 binding
             protein 5 (FKBP51) and a CpG island, complete sequence
          Length = 24360

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   cctcccgcgcgctcccctcg 159
             ||||||||||||||||||||
Sbjct: 13767 cctcccgcgcgctcccctcg 13786
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>emb|BX009178.1|CNS08F8U Single read from an extremity of a full-length cDNA clone made from
           Anopheles gambiae total adult females. 5-PRIME end of
           clone FK0AAA14DG08 of strain 6-9 of Anopheles gambiae
           (African malaria mosquito)
          Length = 544

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 233 gctgccgccgggcccgccgcgcgc 256
           |||||||||||| |||||||||||
Sbjct: 49  gctgccgccggggccgccgcgcgc 26
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>emb|BX842583.1| Mycobacterium tuberculosis H37Rv complete genome; segment 12/13
          Length = 349606

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 100    tcgccgcctgcgcgctgatc 119
              ||||||||||||||||||||
Sbjct: 220664 tcgccgcctgcgcgctgatc 220683
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 86     ggccgccgtcctgatcgccgcctgcgcg 113
              ||||||||||||| ||| ||||||||||
Sbjct: 576731 ggccgccgtcctgctcggcgcctgcgcg 576704
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>emb|BX248346.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 13/14
          Length = 316050

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 100    tcgccgcctgcgcgctgatc 119
              ||||||||||||||||||||
Sbjct: 230081 tcgccgcctgcgcgctgatc 230100
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>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29
          Length = 302007

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 72     ccgcagccgcgcagggccgccgtc 95
              |||||||||||||| |||||||||
Sbjct: 127486 ccgcagccgcgcagcgccgccgtc 127463
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>gb|AC151469.2| Xenopus tropicalis clone ISB1-81I4, complete sequence
          Length = 41906

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 64    gccccctcccgcagccgcgcaggg 87
             |||||||||| |||||||||||||
Sbjct: 25741 gccccctccctcagccgcgcaggg 25764
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>gb|AC096887.2| Homo sapiens chromosome 3 clone RP11-5O17, complete sequence
          Length = 171289

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 238   cgccgggcccgccgcgcgcc 257
             ||||||||||||||||||||
Sbjct: 65652 cgccgggcccgccgcgcgcc 65633
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>gb|AC010463.6| Homo sapiens chromosome 19 clone CTD-2278I10, complete sequence
          Length = 118338

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   ctcctcctcccgcgcgctcc 154
             ||||||||||||||||||||
Sbjct: 39721 ctcctcctcccgcgcgctcc 39740
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>gb|AC023716.4| Drosophila melanogaster X BAC RP98-45E21 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 169124

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 87    gccgccgtcctgatcgccgcctgc 110
             |||||| |||||||||||||||||
Sbjct: 39163 gccgccttcctgatcgccgcctgc 39140
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>gb|AC023694.4| Drosophila melanogaster X BAC RP98-18B11 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 170301

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 87    gccgccgtcctgatcgccgcctgc 110
             |||||| |||||||||||||||||
Sbjct: 81338 gccgccttcctgatcgccgcctgc 81315
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>dbj|AK147134.1| Mus musculus 17 days embryo kidney cDNA, RIKEN full-length enriched
           library, clone:I920183P03 product:hypothetical protein,
           full insert sequence
          Length = 2556

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  ctcccgcagccgcgcagggc 88
           ||||||||||||||||||||
Sbjct: 128 ctcccgcagccgcgcagggc 147
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>dbj|AK029535.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4921518C04 product:hypothetical
           Tetratricopeptide repeat (TPR) structure containing
           protein, full insert sequence
          Length = 3525

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  ctcccgcagccgcgcagggc 88
           ||||||||||||||||||||
Sbjct: 156 ctcccgcagccgcgcagggc 175
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>gb|AC144491.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNAa0091P11, complete sequence
          Length = 132151

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    tgatcgccgcctgcgcgctg 116
             ||||||||||||||||||||
Sbjct: 74923 tgatcgccgcctgcgcgctg 74942
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>dbj|AK019670.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
           library, clone:4930506L13 product:SIMILAR TO RIKEN CDNA
           2510042P03 GENE homolog [Mus musculus], full insert
           sequence
          Length = 2788

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  ctcccgcagccgcgcagggc 88
           ||||||||||||||||||||
Sbjct: 227 ctcccgcagccgcgcagggc 246
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>dbj|AK045096.1| Mus musculus 9.5 days embryo parthenogenote cDNA, RIKEN full-length
           enriched library, clone:B130032F08 product:hypothetical
           TPR repeat containing protein, full insert sequence
          Length = 2662

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  ctcccgcagccgcgcagggc 88
           ||||||||||||||||||||
Sbjct: 153 ctcccgcagccgcgcagggc 172
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 238     cgccgggcccgccgcgcgccgacg 261
               |||||| |||||||||||||||||
Sbjct: 1925181 cgccggtcccgccgcgcgccgacg 1925204
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>dbj|AK011097.1| Mus musculus 13 days embryo liver cDNA, RIKEN full-length enriched
           library, clone:2510042P03 product:4930506L13RIK PROTEIN
           homolog [Mus musculus], full insert sequence
          Length = 2577

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 69  ctcccgcagccgcgcagggc 88
           ||||||||||||||||||||
Sbjct: 155 ctcccgcagccgcgcagggc 174
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 132      gccctcctcctcccgcgcgc 151
                ||||||||||||||||||||
Sbjct: 22373428 gccctcctcctcccgcgcgc 22373447
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 97      tgatcgccgcctgcgcgctg 116
               ||||||||||||||||||||
Sbjct: 3796410 tgatcgccgcctgcgcgctg 3796429
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>gb|AC126221.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBa0015N19, complete sequence
          Length = 168430

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 97   tgatcgccgcctgcgcgctg 116
            ||||||||||||||||||||
Sbjct: 2772 tgatcgccgcctgcgcgctg 2791
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 100     tcgccgcctgcgcgctgatc 119
               ||||||||||||||||||||
Sbjct: 6313746 tcgccgcctgcgcgctgatc 6313765
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>emb|AL772341.12| Mouse DNA sequence from clone RP23-179N22 on chromosome 2, complete
             sequence
          Length = 219412

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    ctcccgcagccgcgcagggc 88
             ||||||||||||||||||||
Sbjct: 39375 ctcccgcagccgcgcagggc 39356



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    ctcccgcagccgcgcagggc 88
             ||||||||||||||||||||
Sbjct: 35804 ctcccgcagccgcgcagggc 35785
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>dbj|AP004705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0682A06
          Length = 142023

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 243    ggcccgccgcgcgccgacgtgttc 266
              |||||||||||||||| |||||||
Sbjct: 118664 ggcccgccgcgcgccgccgtgttc 118687
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>dbj|AK110473.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-166-H04, full
            insert sequence
          Length = 2644

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 234  ctgccgccgggcccgccgcgcgcc 257
            ||||||||| ||||||||||||||
Sbjct: 1753 ctgccgccgcgcccgccgcgcgcc 1776
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>dbj|AK069936.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039G20, full
           insert sequence
          Length = 2880

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 132 gccctcctcctcccgcgcgc 151
           ||||||||||||||||||||
Sbjct: 257 gccctcctcctcccgcgcgc 276
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>dbj|AK069569.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022K12, full
            insert sequence
          Length = 1422

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 97   tgatcgccgcctgcgcgctg 116
            ||||||||||||||||||||
Sbjct: 1177 tgatcgccgcctgcgcgctg 1158
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>gb|AE003449.2| Drosophila melanogaster chromosome X, section 33 of 74 of the complete
              sequence
          Length = 307201

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 87     gccgccgtcctgatcgccgcctgc 110
              |||||| |||||||||||||||||
Sbjct: 271165 gccgccttcctgatcgccgcctgc 271142
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>emb|AL773533.12| Mouse DNA sequence from clone RP23-159H12 on chromosome 2, complete
              sequence
          Length = 137804

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 69     ctcccgcagccgcgcagggc 88
              ||||||||||||||||||||
Sbjct: 131849 ctcccgcagccgcgcagggc 131830
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 239    gccgggcccgccgcgcgccg 258
              ||||||||||||||||||||
Sbjct: 696220 gccgggcccgccgcgcgccg 696201
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 237     ccgccgggcccgccgcgcgc 256
               ||||||||||||||||||||
Sbjct: 1437286 ccgccgggcccgccgcgcgc 1437305
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>emb|AJ748832.1| Streptomyces lividus lividomycin biosynthesis gene cluster
          Length = 40579

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 237   ccgccgggcccgccgcgcgc 256
             ||||||||||||||||||||
Sbjct: 20526 ccgccgggcccgccgcgcgc 20507
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>dbj|AB062134.1| Arthrobacter sp. K-1 bff gene for beta-fructofuranosidase, complete
           cds
          Length = 1737

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 86  ggccgccgtcctgatcgccg 105
           ||||||||||||||||||||
Sbjct: 69  ggccgccgtcctgatcgccg 88
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>dbj|AB046843.2| Homo sapiens mRNA for KIAA1623 protein, partial cds
          Length = 4150

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 135 ctcctcctcccgcgcgctcc 154
           ||||||||||||||||||||
Sbjct: 61  ctcctcctcccgcgcgctcc 80


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,331,045
Number of Sequences: 3902068
Number of extensions: 2331045
Number of successful extensions: 46805
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44708
Number of HSP's gapped (non-prelim): 2097
length of query: 289
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 267
effective length of database: 17,147,199,772
effective search space: 4578302339124
effective search space used: 4578302339124
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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