ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet62g12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK106809.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-116-C08, full insert sequence Length = 2201 Score = 56.0 bits (28), Expect = 4e-05 Identities = 89/108 (82%), Gaps = 1/108 (0%) Strand = Plus / Plus Query: 79 tccatgggcgtcttcggctcctccgccaaggtgtaccgcccggcgccggaggtcgacctc 138 |||||||| |||||| |||| | ||||||||||| |||||| |||||||| | ||| Sbjct: 86 tccatgggtgtcttcagctcggctcccaaggtgtacaagccggcgtcggaggtcaatctc 145 Query: 139 ggccccggcagcggcgagcatctacatcagccccaatgtcaaagctcc 186 ||| ||| |||| |||| |||||||||||||||| ||||||||||| Sbjct: 146 ggcgccgacagcaacgagt-tctacatcagccccaacgtcaaagctcc 192
>gb|AC147812.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0073K23 map near R10571S, complete sequence Length = 161073 Score = 48.1 bits (24), Expect = 0.010 Identities = 85/104 (81%), Gaps = 1/104 (0%) Strand = Plus / Plus Query: 79 tccatgggcgtcttcggctcctccgccaaggtgtaccgcccggcgccggaggtcgacctc 138 |||||||| |||||| |||| | ||||||||||| |||||| |||||||| | ||| Sbjct: 45102 tccatgggtgtcttcagctcggctcccaaggtgtacaagccggcgtcggaggtcaatctc 45161 Query: 139 ggccccggcagcggcgagcatctacatcagccccaatgtcaaag 182 ||| ||| |||| |||| |||||||||||||||| ||||||| Sbjct: 45162 ggcgccgacagcaacgagt-tctacatcagccccaacgtcaaag 45204
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 48.1 bits (24), Expect = 0.010 Identities = 85/104 (81%), Gaps = 1/104 (0%) Strand = Plus / Minus Query: 79 tccatgggcgtcttcggctcctccgccaaggtgtaccgcccggcgccggaggtcgacctc 138 |||||||| |||||| |||| | ||||||||||| |||||| |||||||| | ||| Sbjct: 3369192 tccatgggtgtcttcagctcggctcccaaggtgtacaagccggcgtcggaggtcaatctc 3369133 Query: 139 ggccccggcagcggcgagcatctacatcagccccaatgtcaaag 182 ||| ||| |||| |||| |||||||||||||||| ||||||| Sbjct: 3369132 ggcgccgacagcaacgagt-tctacatcagccccaacgtcaaag 3369090
>dbj|AK066442.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013066H12, full insert sequence Length = 3218 Score = 48.1 bits (24), Expect = 0.010 Identities = 85/104 (81%), Gaps = 1/104 (0%) Strand = Plus / Minus Query: 79 tccatgggcgtcttcggctcctccgccaaggtgtaccgcccggcgccggaggtcgacctc 138 |||||||| |||||| |||| | ||||||||||| |||||| |||||||| | ||| Sbjct: 3019 tccatgggtgtcttcagctcggctcccaaggtgtacaagccggcgtcggaggtcaatctc 2960 Query: 139 ggccccggcagcggcgagcatctacatcagccccaatgtcaaag 182 ||| ||| |||| |||| |||||||||||||||| ||||||| Sbjct: 2959 ggcgccgacagcaacgagt-tctacatcagccccaacgtcaaag 2917
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 48.1 bits (24), Expect = 0.010 Identities = 85/104 (81%), Gaps = 1/104 (0%) Strand = Plus / Minus Query: 79 tccatgggcgtcttcggctcctccgccaaggtgtaccgcccggcgccggaggtcgacctc 138 |||||||| |||||| |||| | ||||||||||| |||||| |||||||| | ||| Sbjct: 3377897 tccatgggtgtcttcagctcggctcccaaggtgtacaagccggcgtcggaggtcaatctc 3377838 Query: 139 ggccccggcagcggcgagcatctacatcagccccaatgtcaaag 182 ||| ||| |||| |||| |||||||||||||||| ||||||| Sbjct: 3377837 ggcgccgacagcaacgagt-tctacatcagccccaacgtcaaag 3377795
>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29 Length = 283100 Score = 46.1 bits (23), Expect = 0.038 Identities = 26/27 (96%) Strand = Plus / Minus Query: 132 cgacctcggccccggcagcggcgagca 158 |||||||||||||||| |||||||||| Sbjct: 166616 cgacctcggccccggcggcggcgagca 166590
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 44.1 bits (22), Expect = 0.15 Identities = 22/22 (100%) Strand = Plus / Plus Query: 127 gaggtcgacctcggccccggca 148 |||||||||||||||||||||| Sbjct: 670583 gaggtcgacctcggccccggca 670604 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 63 ggccgcaccgtctccgtcc 81 ||||||||||||||||||| Sbjct: 26916 ggccgcaccgtctccgtcc 26898
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 42.1 bits (21), Expect = 0.60 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 cctcggccccggcagcggcga 155 ||||||||||||||||||||| Sbjct: 3017528 cctcggccccggcagcggcga 3017548
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 42.1 bits (21), Expect = 0.60 Identities = 21/21 (100%) Strand = Plus / Plus Query: 102 cgccaaggtgtaccgcccggc 122 ||||||||||||||||||||| Sbjct: 1587675 cgccaaggtgtaccgcccggc 1587695
>ref|NM_022033.1| Mus musculus 3-oxoacid CoA transferase 2A (Oxct2a), mRNA Length = 1745 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 ggcgagcatctacatcagccccaa 174 |||||||| ||||||||||||||| Sbjct: 1009 ggcgagcaactacatcagccccaa 1032
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 134 acctcggccccggcagcggcgagc 157 |||||||||||||| ||||||||| Sbjct: 657619 acctcggccccggcggcggcgagc 657596
>ref|XM_982468.1| PREDICTED: Mus musculus 3-oxoacid CoA transferase 2B (Oxct2b), mRNA Length = 1907 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 ggcgagcatctacatcagccccaa 174 |||||||| ||||||||||||||| Sbjct: 1173 ggcgagcaactacatcagccccaa 1196
>ref|XM_756157.1| Ustilago maydis 521 hypothetical protein (UM05103.1) partial mRNA Length = 1725 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 ttcgttccgagctctcttcc 52 |||||||||||||||||||| Sbjct: 1310 ttcgttccgagctctcttcc 1329
>gb|AC133604.3| Mus musculus BAC clone RP23-416F12 from chromosome 8, complete sequence Length = 221603 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 catcagccccaatgtcaaag 182 |||||||||||||||||||| Sbjct: 40989 catcagccccaatgtcaaag 41008
>ref|NM_181859.1| Mus musculus 3-oxoacid CoA transferase 2B (Oxct2b), mRNA Length = 1745 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 ggcgagcatctacatcagccccaa 174 |||||||| ||||||||||||||| Sbjct: 1009 ggcgagcaactacatcagccccaa 1032
>gb|BC113758.1| Mus musculus 3-oxoacid CoA transferase 2B, mRNA (cDNA clone MGC:130507 IMAGE:40047052), complete cds Length = 1685 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 ggcgagcatctacatcagccccaa 174 |||||||| ||||||||||||||| Sbjct: 1002 ggcgagcaactacatcagccccaa 1025
>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome Length = 4712337 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 131 tcgacctcggccccggcagcggcg 154 ||||||||||| |||||||||||| Sbjct: 1372678 tcgacctcggcaccggcagcggcg 1372655
>dbj|AK077075.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4933401C12 product:3-oxoacid CoA transferase 2A, full insert sequence Length = 1756 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 ggcgagcatctacatcagccccaa 174 |||||||| ||||||||||||||| Sbjct: 1024 ggcgagcaactacatcagccccaa 1047
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 ccggccgcaccgtctccgtc 80 |||||||||||||||||||| Sbjct: 25785825 ccggccgcaccgtctccgtc 25785844
>dbj|AB045847.1| Mus musculus TISP10 mRNA, complete cds, increased in spermiogenesis Length = 661 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 ggcgagcatctacatcagccccaa 174 |||||||| ||||||||||||||| Sbjct: 90 ggcgagcaactacatcagccccaa 113
>dbj|AB105455.1| Mus musculus Bmp8b, Scot-t2 genes for bone morphogenetic protein 8b, exon 2-3, succinyl-CoA:3-oxoacid CoA-transferase, exon 1, partial and complete cds Length = 4768 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 ggcgagcatctacatcagccccaa 174 |||||||| ||||||||||||||| Sbjct: 3131 ggcgagcaactacatcagccccaa 3154
>dbj|AB105454.1| Mus musculus Bmp8a, Scot-t1 genes for bone morphogenetic protein 8a, exon 2-3, succinyl-CoA:3-oxoacid CoA-transferase, exon 1, partial and complete cds Length = 4070 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 ggcgagcatctacatcagccccaa 174 |||||||| ||||||||||||||| Sbjct: 3109 ggcgagcaactacatcagccccaa 3132
>ref|XM_319417.2| Anopheles gambiae str. PEST ENSANGP00000014344 (ENSANGG00000011855), partial mRNA Length = 1351 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 ctcgttgtcgtccgtccttc 35 |||||||||||||||||||| Sbjct: 301 ctcgttgtcgtccgtccttc 282
>dbj|AK101303.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033033K21, full insert sequence Length = 2964 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 ccggccgcaccgtctccgtc 80 |||||||||||||||||||| Sbjct: 140 ccggccgcaccgtctccgtc 159
>gb|AY623658.2| Aeromicrobium erythreum putative transcriptional repressor and putative dehydrogenase/reductase genes, complete cds; erythromycin biosynthesis gene cluster, complete sequence; putative oxidoreductase and LipN genes, complete cds; monoamine oxidase gene, partial cds; and unknown gene Length = 61845 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 aggtcgacctcggccccggc 147 |||||||||||||||||||| Sbjct: 49537 aggtcgacctcggccccggc 49556
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 ccggccgcaccgtctccgtc 80 |||||||||||||||||||| Sbjct: 25714001 ccggccgcaccgtctccgtc 25714020
>emb|AL928780.5|CNS08CCA Oryza sativa chromosome 12, . BAC OSJNBa0018C20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 137492 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 ccggccgcaccgtctccgtc 80 |||||||||||||||||||| Sbjct: 7276 ccggccgcaccgtctccgtc 7295
>emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa0002L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 167131 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 ccggccgcaccgtctccgtc 80 |||||||||||||||||||| Sbjct: 153063 ccggccgcaccgtctccgtc 153082
>emb|AL606934.12| Mouse DNA sequence from clone RP23-138L21 on chromosome 4, complete sequence Length = 211580 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 ggcgagcatctacatcagccccaa 174 |||||||| ||||||||||||||| Sbjct: 38581 ggcgagcaactacatcagccccaa 38604
>dbj|AB049996.1| Mus musculus mRNA for Scot-t2, complete cds Length = 1745 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 ggcgagcatctacatcagccccaa 174 |||||||| ||||||||||||||| Sbjct: 1009 ggcgagcaactacatcagccccaa 1032
>emb|AL606917.12| Mouse DNA sequence from clone RP23-25K8 on chromosome 4, complete sequence Length = 52163 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 151 ggcgagcatctacatcagccccaa 174 |||||||| ||||||||||||||| Sbjct: 34344 ggcgagcaactacatcagccccaa 34321
>dbj|AB022180.2| Mus musculus mRNA for Scot-t1, complete cds Length = 1745 Score = 40.1 bits (20), Expect = 2.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 ggcgagcatctacatcagccccaa 174 |||||||| ||||||||||||||| Sbjct: 1009 ggcgagcaactacatcagccccaa 1032
>gb|AY493693.1| Gallus gallus SRY-related protein 4 (Sox4) mRNA, complete cds Length = 1489 Score = 38.2 bits (19), Expect = 9.3 Identities = 25/27 (92%) Strand = Plus / Plus Query: 78 gtccatgggcgtcttcggctcctccgc 104 |||| |||||| ||||||||||||||| Sbjct: 1130 gtccctgggcggcttcggctcctccgc 1156
>gb|AC134402.9| Mus musculus chromosome 5, clone RP24-301D19, complete sequence Length = 199834 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 44 ctctcttcctgccagcgcc 62 ||||||||||||||||||| Sbjct: 88206 ctctcttcctgccagcgcc 88224
>gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0030I14, complete sequence Length = 159035 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 59 cgccggccgcaccgtctcc 77 ||||||||||||||||||| Sbjct: 122288 cgccggccgcaccgtctcc 122270
>ref|XM_483826.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1851 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 135 cctcggccccggcagcggc 153 ||||||||||||||||||| Sbjct: 64 cctcggccccggcagcggc 46
>ref|XM_479521.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1332 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 93 cggctcctccgccaaggtgtacc 115 |||| |||||||||||||||||| Sbjct: 120 cggcgcctccgccaaggtgtacc 142
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 131 tcgacctcggccccggcag 149 ||||||||||||||||||| Sbjct: 5142305 tcgacctcggccccggcag 5142287
>ref|XM_548835.2| PREDICTED: Canis familiaris similar to Zinc finger BED domain containing protein 1 (dREF homolog) (Putative Ac-like transposable element) (LOC491715), mRNA Length = 2461 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 89 tcttcggctcctccgccaa 107 ||||||||||||||||||| Sbjct: 1907 tcttcggctcctccgccaa 1925
>gb|AY325544.1| Uncultured bacterium clone GA69 putative dissimilatory membrane-bound nitrate reductase (narG) gene, partial cds Length = 664 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 91 ttcggctcctccgccaagg 109 ||||||||||||||||||| Sbjct: 436 ttcggctcctccgccaagg 454
>gb|AC126410.12| Mus musculus chromosome 5, clone RP23-368H6, complete sequence Length = 187058 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 44 ctctcttcctgccagcgcc 62 ||||||||||||||||||| Sbjct: 169951 ctctcttcctgccagcgcc 169933
>gb|AY249864.1| Gallus gallus SRY-box containing protein 4 mRNA, complete cds Length = 1794 Score = 38.2 bits (19), Expect = 9.3 Identities = 25/27 (92%) Strand = Plus / Plus Query: 78 gtccatgggcgtcttcggctcctccgc 104 |||| |||||| ||||||||||||||| Sbjct: 1157 gtccctgggcggcttcggctcctccgc 1183
>ref|NM_001030736.1| Gallus gallus similar to LOC283464 protein (LOC417789), mRNA Length = 3058 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 136 ctcggccccggcagcggcg 154 ||||||||||||||||||| Sbjct: 51 ctcggccccggcagcggcg 33
>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29 Length = 291000 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 59 cgccggccgcaccgtctcc 77 ||||||||||||||||||| Sbjct: 148084 cgccggccgcaccgtctcc 148066
>emb|AJ720098.1| Gallus gallus mRNA for hypothetical protein, clone 10i5 Length = 3058 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 136 ctcggccccggcagcggcg 154 ||||||||||||||||||| Sbjct: 51 ctcggccccggcagcggcg 33
>ref|NM_204484.1| Gallus gallus SRY (sex determining region Y)-box 4 (SOX4), mRNA Length = 1794 Score = 38.2 bits (19), Expect = 9.3 Identities = 25/27 (92%) Strand = Plus / Plus Query: 78 gtccatgggcgtcttcggctcctccgc 104 |||| |||||| ||||||||||||||| Sbjct: 1157 gtccctgggcggcttcggctcctccgc 1183
>dbj|AK097500.1| Homo sapiens cDNA FLJ40181 fis, clone TESTI2018178 Length = 2572 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 13 cgcctcgttgtcgtccgtccttc 35 |||||||||||||||| |||||| Sbjct: 1923 cgcctcgttgtcgtccttccttc 1945
>dbj|AB200391.1| Ipomoea nil PnSCR mRNA for SCARECROW, complete cds Length = 2505 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 97 tcctccgccaaggtgtacc 115 ||||||||||||||||||| Sbjct: 2306 tcctccgccaaggtgtacc 2288
>gb|AC034303.14| Homo sapiens chromosome 17, clone RP11-648P8, complete sequence Length = 157850 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 13 cgcctcgttgtcgtccgtccttc 35 |||||||||||||||| |||||| Sbjct: 91722 cgcctcgttgtcgtccttccttc 91700
>ref|XM_683862.1| PREDICTED: Danio rerio similar to IQ motif and Sec7 domain 2 (LOC560461), mRNA Length = 3612 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 166 cagccccaatgtcaaagct 184 ||||||||||||||||||| Sbjct: 1932 cagccccaatgtcaaagct 1950
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 58 gcgccggccgcaccgtctccgtc 80 ||||||||||||| ||||||||| Sbjct: 2299587 gcgccggccgcacagtctccgtc 2299609
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 131 tcgacctcggccccggcagcggc 153 ||||||||||| ||||||||||| Sbjct: 2567823 tcgacctcggcaccggcagcggc 2567845
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 135 cctcggccccggcagcggc 153 ||||||||||||||||||| Sbjct: 28285175 cctcggccccggcagcggc 28285193
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 93 cggctcctccgccaaggtgtacc 115 |||| |||||||||||||||||| Sbjct: 28657456 cggcgcctccgccaaggtgtacc 28657478
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 59 cgccggccgcaccgtctcc 77 ||||||||||||||||||| Sbjct: 29474263 cgccggccgcaccgtctcc 29474245
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 38.2 bits (19), Expect = 9.3 Identities = 25/27 (92%) Strand = Plus / Plus Query: 132 cgacctcggccccggcagcggcgagca 158 |||||||||||||||| ||||| |||| Sbjct: 7687265 cgacctcggccccggcggcggccagca 7687291
>gb|AC002347.3| Homo sapiens chromosome 17, clone CTC-297N7, complete sequence Length = 134706 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 13 cgcctcgttgtcgtccgtccttc 35 |||||||||||||||| |||||| Sbjct: 120849 cgcctcgttgtcgtccttccttc 120827
>gb|AF497482.1| Micromonospora echinospora calicheamicin biosynthetic locus, complete sequence Length = 90348 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 126 ggaggtcgacctcggcccc 144 ||||||||||||||||||| Sbjct: 18028 ggaggtcgacctcggcccc 18046
>gb|AF246759.1|AF246759 Streptococcus sanguinis strain SSB1 DNA gyrase subunit A (gyrA) gene, partial cds Length = 228 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 67 gcaccgtctccgtccatgg 85 ||||||||||||||||||| Sbjct: 170 gcaccgtctccgtccatgg 152
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 129 ggtcgacctcggccccggc 147 ||||||||||||||||||| Sbjct: 2587142 ggtcgacctcggccccggc 2587160
>dbj|AP005411.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0044E16 Length = 153296 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 135 cctcggccccggcagcggc 153 ||||||||||||||||||| Sbjct: 13981 cctcggccccggcagcggc 13999
>dbj|AP004623.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0705A05 Length = 143765 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 135 cctcggccccggcagcggc 153 ||||||||||||||||||| Sbjct: 76990 cctcggccccggcagcggc 77008
>dbj|AK111746.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023047E15, full insert sequence Length = 1724 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 93 cggctcctccgccaaggtgtacc 115 |||| |||||||||||||||||| Sbjct: 287 cggcgcctccgccaaggtgtacc 309
>dbj|AK108209.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-D08, full insert sequence Length = 934 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 59 cgccggccgcaccgtctcc 77 ||||||||||||||||||| Sbjct: 12 cgccggccgcaccgtctcc 30
>dbj|AK107887.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-134-E01, full insert sequence Length = 509 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 59 cgccggccgcaccgtctcc 77 ||||||||||||||||||| Sbjct: 35 cgccggccgcaccgtctcc 53
>dbj|AK062521.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-D04, full insert sequence Length = 943 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 59 cgccggccgcaccgtctcc 77 ||||||||||||||||||| Sbjct: 21 cgccggccgcaccgtctcc 39
>dbj|AP003757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1409_C08 Length = 90673 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 93 cggctcctccgccaaggtgtacc 115 |||| |||||||||||||||||| Sbjct: 32626 cggcgcctccgccaaggtgtacc 32648
>gb|AF333038.2| Streptomyces viridochromogenes Avilamycin A biosynthetic gene cluster, complete sequence Length = 59816 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 129 ggtcgacctcggccccggc 147 ||||||||||||||||||| Sbjct: 14089 ggtcgacctcggccccggc 14107
>gb|AC006486.1|AC006486 Homo sapiens chromosome 19, BAC CIT-B-147B23 (BC85722), complete sequence Length = 111084 Score = 38.2 bits (19), Expect = 9.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 114 ccgcccggcgccggaggtcgacc 136 |||||||| |||||||||||||| Sbjct: 75991 ccgcccggggccggaggtcgacc 76013
>emb|AL939130.1|SCO939130 Streptomyces coelicolor A3(2) complete genome; segment 27/29 Length = 303450 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 135 cctcggccccggcagcggc 153 ||||||||||||||||||| Sbjct: 203065 cctcggccccggcagcggc 203047 Score = 38.2 bits (19), Expect = 9.3 Identities = 25/27 (92%) Strand = Plus / Minus Query: 135 cctcggccccggcagcggcgagcatct 161 ||||||||||||| ||| ||||||||| Sbjct: 169255 cctcggccccggcggcgtcgagcatct 169229
>gb|AC144455.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0086G17, complete sequence Length = 134631 Score = 38.2 bits (19), Expect = 9.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 59 cgccggccgcaccgtctcc 77 ||||||||||||||||||| Sbjct: 58533 cgccggccgcaccgtctcc 58515 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,036,401 Number of Sequences: 3902068 Number of extensions: 1036401 Number of successful extensions: 84230 Number of sequences better than 10.0: 71 Number of HSP's better than 10.0 without gapping: 71 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82688 Number of HSP's gapped (non-prelim): 1538 length of query: 189 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 167 effective length of database: 17,147,199,772 effective search space: 2863582361924 effective search space used: 2863582361924 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
