ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet62b11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_507368.1| PREDICTED Oryza sativa (japonica cultivar-group), P0567H04.15 mRNA Length = 1156 Score = 165 bits (83), Expect = 1e-37 Identities = 131/147 (89%) Strand = Plus / Plus Query: 211 ccgaccaccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggc 270 ||||| || ||| ||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct: 192 ccgacgacggacaggccgctgtggttccccggcgcggtggcgccggactacctggacggg 251 Query: 271 acgctcgtcggcgactacggcttcgaccccttcggcctcgggaagcccgcggagtacctg 330 |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 252 tcgctcgtcggcgactacggcttcgacccgttcggcctcgggaagccggcggagtacctg 311 Query: 331 cagtacgacgtggactccctggaccag 357 |||| ||| ||||||| ||||||||| Sbjct: 312 cagttcgagctggactcgctggaccag 338 Score = 131 bits (66), Expect = 2e-27 Identities = 99/110 (90%) Strand = Plus / Plus Query: 65 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 124 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 37 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 96 Query: 125 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcggc 174 |||||||||||||||||| |||| | ||||||||| ||||||| |||||| Sbjct: 97 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcggc 146
>ref|XM_478692.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1152 Score = 165 bits (83), Expect = 1e-37 Identities = 131/147 (89%) Strand = Plus / Plus Query: 211 ccgaccaccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggc 270 ||||| || ||| ||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct: 187 ccgacgacggacaggccgctgtggttccccggcgcggtggcgccggactacctggacggg 246 Query: 271 acgctcgtcggcgactacggcttcgaccccttcggcctcgggaagcccgcggagtacctg 330 |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 247 tcgctcgtcggcgactacggcttcgacccgttcggcctcgggaagccggcggagtacctg 306 Query: 331 cagtacgacgtggactccctggaccag 357 |||| ||| ||||||| ||||||||| Sbjct: 307 cagttcgagctggactcgctggaccag 333 Score = 131 bits (66), Expect = 2e-27 Identities = 99/110 (90%) Strand = Plus / Plus Query: 65 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 124 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 32 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 91 Query: 125 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcggc 174 |||||||||||||||||| |||| | ||||||||| ||||||| |||||| Sbjct: 92 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcggc 141
>ref|XM_507367.1| PREDICTED Oryza sativa (japonica cultivar-group), P0567H04.15 mRNA Length = 1162 Score = 165 bits (83), Expect = 1e-37 Identities = 131/147 (89%) Strand = Plus / Plus Query: 211 ccgaccaccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggc 270 ||||| || ||| ||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct: 194 ccgacgacggacaggccgctgtggttccccggcgcggtggcgccggactacctggacggg 253 Query: 271 acgctcgtcggcgactacggcttcgaccccttcggcctcgggaagcccgcggagtacctg 330 |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 254 tcgctcgtcggcgactacggcttcgacccgttcggcctcgggaagccggcggagtacctg 313 Query: 331 cagtacgacgtggactccctggaccag 357 |||| ||| ||||||| ||||||||| Sbjct: 314 cagttcgagctggactcgctggaccag 340 Score = 131 bits (66), Expect = 2e-27 Identities = 99/110 (90%) Strand = Plus / Plus Query: 65 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 124 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 39 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 98 Query: 125 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcggc 174 |||||||||||||||||| |||| | ||||||||| ||||||| |||||| Sbjct: 99 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcggc 148
>ref|XM_507366.1| PREDICTED Oryza sativa (japonica cultivar-group), P0567H04.15 mRNA Length = 1183 Score = 165 bits (83), Expect = 1e-37 Identities = 131/147 (89%) Strand = Plus / Plus Query: 211 ccgaccaccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggc 270 ||||| || ||| ||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct: 194 ccgacgacggacaggccgctgtggttccccggcgcggtggcgccggactacctggacggg 253 Query: 271 acgctcgtcggcgactacggcttcgaccccttcggcctcgggaagcccgcggagtacctg 330 |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 254 tcgctcgtcggcgactacggcttcgacccgttcggcctcgggaagccggcggagtacctg 313 Query: 331 cagtacgacgtggactccctggaccag 357 |||| ||| ||||||| ||||||||| Sbjct: 314 cagttcgagctggactcgctggaccag 340 Score = 131 bits (66), Expect = 2e-27 Identities = 99/110 (90%) Strand = Plus / Plus Query: 65 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 124 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 39 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 98 Query: 125 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcggc 174 |||||||||||||||||| |||| | ||||||||| ||||||| |||||| Sbjct: 99 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcggc 148
>ref|XM_506405.2| PREDICTED Oryza sativa (japonica cultivar-group), P0567H04.15 mRNA Length = 1221 Score = 165 bits (83), Expect = 1e-37 Identities = 131/147 (89%) Strand = Plus / Plus Query: 211 ccgaccaccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggc 270 ||||| || ||| ||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct: 208 ccgacgacggacaggccgctgtggttccccggcgcggtggcgccggactacctggacggg 267 Query: 271 acgctcgtcggcgactacggcttcgaccccttcggcctcgggaagcccgcggagtacctg 330 |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 268 tcgctcgtcggcgactacggcttcgacccgttcggcctcgggaagccggcggagtacctg 327 Query: 331 cagtacgacgtggactccctggaccag 357 |||| ||| ||||||| ||||||||| Sbjct: 328 cagttcgagctggactcgctggaccag 354 Score = 131 bits (66), Expect = 2e-27 Identities = 99/110 (90%) Strand = Plus / Plus Query: 65 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 124 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 53 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 112 Query: 125 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcggc 174 |||||||||||||||||| |||| | ||||||||| ||||||| |||||| Sbjct: 113 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcggc 162
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 165 bits (83), Expect = 1e-37 Identities = 131/147 (89%) Strand = Plus / Minus Query: 211 ccgaccaccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggc 270 ||||| || ||| ||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct: 22264149 ccgacgacggacaggccgctgtggttccccggcgcggtggcgccggactacctggacggg 22264090 Query: 271 acgctcgtcggcgactacggcttcgaccccttcggcctcgggaagcccgcggagtacctg 330 |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 22264089 tcgctcgtcggcgactacggcttcgacccgttcggcctcgggaagccggcggagtacctg 22264030 Query: 331 cagtacgacgtggactccctggaccag 357 |||| ||| ||||||| ||||||||| Sbjct: 22264029 cagttcgagctggactcgctggaccag 22264003 Score = 131 bits (66), Expect = 2e-27 Identities = 99/110 (90%) Strand = Plus / Minus Query: 65 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 124 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 22264304 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 22264245 Query: 125 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcggc 174 |||||||||||||||||| |||| | ||||||||| ||||||| |||||| Sbjct: 22264244 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcggc 22264195
>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0567H04 Length = 181420 Score = 165 bits (83), Expect = 1e-37 Identities = 131/147 (89%) Strand = Plus / Minus Query: 211 ccgaccaccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggc 270 ||||| || ||| ||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct: 69395 ccgacgacggacaggccgctgtggttccccggcgcggtggcgccggactacctggacggg 69336 Query: 271 acgctcgtcggcgactacggcttcgaccccttcggcctcgggaagcccgcggagtacctg 330 |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 69335 tcgctcgtcggcgactacggcttcgacccgttcggcctcgggaagccggcggagtacctg 69276 Query: 331 cagtacgacgtggactccctggaccag 357 |||| ||| ||||||| ||||||||| Sbjct: 69275 cagttcgagctggactcgctggaccag 69249 Score = 131 bits (66), Expect = 2e-27 Identities = 99/110 (90%) Strand = Plus / Minus Query: 65 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 124 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 69550 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 69491 Query: 125 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcggc 174 |||||||||||||||||| |||| | ||||||||| ||||||| |||||| Sbjct: 69490 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcggc 69441
>dbj|AK119534.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-B02, full insert sequence Length = 1234 Score = 165 bits (83), Expect = 1e-37 Identities = 131/147 (89%) Strand = Plus / Plus Query: 211 ccgaccaccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggc 270 ||||| || ||| ||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct: 194 ccgacgacggacaggccgctgtggttccccggcgcggtggcgccggactacctggacggg 253 Query: 271 acgctcgtcggcgactacggcttcgaccccttcggcctcgggaagcccgcggagtacctg 330 |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 254 tcgctcgtcggcgactacggcttcgacccgttcggcctcgggaagccggcggagtacctg 313 Query: 331 cagtacgacgtggactccctggaccag 357 |||| ||| ||||||| ||||||||| Sbjct: 314 cagttcgagctggactcgctggaccag 340 Score = 131 bits (66), Expect = 2e-27 Identities = 99/110 (90%) Strand = Plus / Plus Query: 65 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 124 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 39 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 98 Query: 125 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcggc 174 |||||||||||||||||| |||| | ||||||||| ||||||| |||||| Sbjct: 99 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcggc 148
>dbj|AK104619.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-F11, full insert sequence Length = 1152 Score = 165 bits (83), Expect = 1e-37 Identities = 131/147 (89%) Strand = Plus / Plus Query: 211 ccgaccaccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggc 270 ||||| || ||| ||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct: 187 ccgacgacggacaggccgctgtggttccccggcgcggtggcgccggactacctggacggg 246 Query: 271 acgctcgtcggcgactacggcttcgaccccttcggcctcgggaagcccgcggagtacctg 330 |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 247 tcgctcgtcggcgactacggcttcgacccgttcggcctcgggaagccggcggagtacctg 306 Query: 331 cagtacgacgtggactccctggaccag 357 |||| ||| ||||||| ||||||||| Sbjct: 307 cagttcgagctggactcgctggaccag 333 Score = 131 bits (66), Expect = 2e-27 Identities = 99/110 (90%) Strand = Plus / Plus Query: 65 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 124 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 32 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 91 Query: 125 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcggc 174 |||||||||||||||||| |||| | ||||||||| ||||||| |||||| Sbjct: 92 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcggc 141
>dbj|AK104309.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D03, full insert sequence Length = 1169 Score = 165 bits (83), Expect = 1e-37 Identities = 131/147 (89%) Strand = Plus / Plus Query: 211 ccgaccaccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggc 270 ||||| || ||| ||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct: 201 ccgacgacggacaggccgctgtggttccccggcgcggtggcgccggactacctggacggg 260 Query: 271 acgctcgtcggcgactacggcttcgaccccttcggcctcgggaagcccgcggagtacctg 330 |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 261 tcgctcgtcggcgactacggcttcgacccgttcggcctcgggaagccggcggagtacctg 320 Query: 331 cagtacgacgtggactccctggaccag 357 |||| ||| ||||||| ||||||||| Sbjct: 321 cagttcgagctggactcgctggaccag 347 Score = 131 bits (66), Expect = 2e-27 Identities = 99/110 (90%) Strand = Plus / Plus Query: 65 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 124 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 46 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 105 Query: 125 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcggc 174 |||||||||||||||||| |||| | ||||||||| ||||||| |||||| Sbjct: 106 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcggc 155
>dbj|AK103924.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-C12, full insert sequence Length = 1183 Score = 165 bits (83), Expect = 1e-37 Identities = 131/147 (89%) Strand = Plus / Plus Query: 211 ccgaccaccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggc 270 ||||| || ||| ||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct: 194 ccgacgacggacaggccgctgtggttccccggcgcggtggcgccggactacctggacggg 253 Query: 271 acgctcgtcggcgactacggcttcgaccccttcggcctcgggaagcccgcggagtacctg 330 |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 254 tcgctcgtcggcgactacggcttcgacccgttcggcctcgggaagccggcggagtacctg 313 Query: 331 cagtacgacgtggactccctggaccag 357 |||| ||| ||||||| ||||||||| Sbjct: 314 cagttcgagctggactcgctggaccag 340 Score = 131 bits (66), Expect = 2e-27 Identities = 99/110 (90%) Strand = Plus / Plus Query: 65 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 124 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 39 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 98 Query: 125 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcggc 174 |||||||||||||||||| |||| | ||||||||| ||||||| |||||| Sbjct: 99 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcggc 148
>dbj|AK098992.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098H13, full insert sequence Length = 1156 Score = 165 bits (83), Expect = 1e-37 Identities = 131/147 (89%) Strand = Plus / Plus Query: 211 ccgaccaccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggc 270 ||||| || ||| ||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct: 192 ccgacgacggacaggccgctgtggttccccggcgcggtggcgccggactacctggacggg 251 Query: 271 acgctcgtcggcgactacggcttcgaccccttcggcctcgggaagcccgcggagtacctg 330 |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 252 tcgctcgtcggcgactacggcttcgacccgttcggcctcgggaagccggcggagtacctg 311 Query: 331 cagtacgacgtggactccctggaccag 357 |||| ||| ||||||| ||||||||| Sbjct: 312 cagttcgagctggactcgctggaccag 338 Score = 131 bits (66), Expect = 2e-27 Identities = 99/110 (90%) Strand = Plus / Plus Query: 65 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 124 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 37 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 96 Query: 125 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcggc 174 |||||||||||||||||| |||| | ||||||||| ||||||| |||||| Sbjct: 97 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcggc 146
>dbj|AK058293.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-F01, full insert sequence Length = 1221 Score = 165 bits (83), Expect = 1e-37 Identities = 131/147 (89%) Strand = Plus / Plus Query: 211 ccgaccaccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggc 270 ||||| || ||| ||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct: 208 ccgacgacggacaggccgctgtggttccccggcgcggtggcgccggactacctggacggg 267 Query: 271 acgctcgtcggcgactacggcttcgaccccttcggcctcgggaagcccgcggagtacctg 330 |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 268 tcgctcgtcggcgactacggcttcgacccgttcggcctcgggaagccggcggagtacctg 327 Query: 331 cagtacgacgtggactccctggaccag 357 |||| ||| ||||||| ||||||||| Sbjct: 328 cagttcgagctggactcgctggaccag 354 Score = 131 bits (66), Expect = 2e-27 Identities = 99/110 (90%) Strand = Plus / Plus Query: 65 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 124 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 53 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 112 Query: 125 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcggc 174 |||||||||||||||||| |||| | ||||||||| ||||||| |||||| Sbjct: 113 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcggc 162
>gb|AF058796.1|AF058796 Oryza sativa chlorophyll a/b-binding protein (RCABP69) mRNA, complete cds Length = 1178 Score = 165 bits (83), Expect = 1e-37 Identities = 131/147 (89%) Strand = Plus / Plus Query: 211 ccgaccaccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggc 270 ||||| || ||| ||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct: 192 ccgacgacggacaggccgctgtggttccccggcgcggtggcgccggactacctggacggg 251 Query: 271 acgctcgtcggcgactacggcttcgaccccttcggcctcgggaagcccgcggagtacctg 330 |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 252 tcgctcgtcggcgactacggcttcgacccgttcggcctcgggaagccggcggagtacctg 311 Query: 331 cagtacgacgtggactccctggaccag 357 |||| ||| ||||||| ||||||||| Sbjct: 312 cagttcgagctggactcgctggaccag 338 Score = 131 bits (66), Expect = 2e-27 Identities = 99/110 (90%) Strand = Plus / Plus Query: 65 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 124 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 37 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 96 Query: 125 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcggc 174 |||||||||||||||||| |||| | ||||||||| ||||||| |||||| Sbjct: 97 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcggc 146
>emb|Z50801.1|ZMCABCP29 Z.mays mRNA for chlorophyll a/b-binding protein CP29 Length = 1162 Score = 155 bits (78), Expect = 1e-34 Identities = 123/138 (89%) Strand = Plus / Plus Query: 220 gaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggcacgctcgtc 279 |||||||||||||||||||||||||| ||||||||| ||||| |||||| |||| ||| Sbjct: 170 gaccggccgctgtggttccccggcgccgtggcgcccgactacctggacggctcgctggtc 229 Query: 280 ggcgactacggcttcgaccccttcggcctcgggaagcccgcggagtacctgcagtacgac 339 ||||||||||| |||||||| ||||| ||||||||||||| |||||||||||||| ||| Sbjct: 230 ggcgactacgggttcgacccgttcggtctcgggaagcccgtggagtacctgcagttcgag 289 Query: 340 gtggactccctggaccag 357 ||||||| ||||||||| Sbjct: 290 ttggactcgctggaccag 307 Score = 145 bits (73), Expect = 1e-31 Identities = 97/105 (92%) Strand = Plus / Plus Query: 69 agccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctggcgga 128 |||||||||||| ||||||||||||||||||||||| ||||| || ||||| |||||||| Sbjct: 7 agccatggcttcatcggtggccgccgcggcgagcacattcctgggcacccgcctggcgga 66 Query: 129 cccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcgg 173 ||||||||| |||||||||||||||||||| |||||||| ||||| Sbjct: 67 cccggcgccacagaacgggcgcatcgtggcccggttcgggttcgg 111
>gb|AY103995.1| Zea mays PCO102677 mRNA sequence Length = 1225 Score = 153 bits (77), Expect = 5e-34 Identities = 101/109 (92%) Strand = Plus / Plus Query: 65 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 124 |||||||||||||||| ||||||||||||||||||||||| ||||| || ||||| |||| Sbjct: 47 gagcagccatggcttcatcggtggccgccgcggcgagcacattcctgggcacccgcctgg 106 Query: 125 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcgg 173 ||||||||||||| |||||||||||||||||||| |||||||| ||||| Sbjct: 107 cggacccggcgccacagaacgggcgcatcgtggcccggttcgggttcgg 155 Score = 141 bits (71), Expect = 2e-30 Identities = 123/139 (88%), Gaps = 1/139 (0%) Strand = Plus / Plus Query: 220 gaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggcacgctcgtc 279 |||||||||||||||||||||||||| ||||||||| ||||| |||||| |||| ||| Sbjct: 214 gaccggccgctgtggttccccggcgccgtggcgcccgactacctggacggctcgctggtc 273 Query: 280 ggcgactacggcttcgaccccttcggcctcgggaagcccg-cggagtacctgcagtacga 338 ||||||||||| |||||||| ||||| ||||||||||||| |||||||||||||| ||| Sbjct: 274 ggcgactacgggttcgacccgttcggtctcgggaagcccgtgggagtacctgcagttcga 333 Query: 339 cgtggactccctggaccag 357 ||||||| ||||||||| Sbjct: 334 gttggactcgctggaccag 352
>emb|Y10786.1|SSY10786 S.stapfianus pSD.76 mRNA Length = 332 Score = 139 bits (70), Expect = 7e-30 Identities = 85/90 (94%) Strand = Plus / Plus Query: 91 gccgcggcgagcacgttcctcgggacccggctggcggacccggcgccgcagaacgggcgc 150 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 54 gccgcggcgagcacgttcctcgggacccgcctggcggacccggcgccccagaacgggcgc 113 Query: 151 atcgtggcgcggttcggcttcggcaagaag 180 ||||||||||||||| |||||||||||| Sbjct: 114 atcgtggcgcggttcccgttcggcaagaag 143 Score = 135 bits (68), Expect = 1e-28 Identities = 122/140 (87%) Strand = Plus / Plus Query: 218 ccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggcacgctcg 277 |||||||||||||||||||||| |||||| |||||||||| ||||||||||| || | Sbjct: 187 ccgaccggccgctgtggttcccgggcgcgaaggcgcccgactacctcgacgggacctatg 246 Query: 278 tcggcgactacggcttcgaccccttcggcctcgggaagcccgcggagtacctgcagtacg 337 | ||||||||||| |||||||| | || ||||||||||||| |||||||||||||| || Sbjct: 247 tgggcgactacgggttcgacccgtgggggctcgggaagcccgtggagtacctgcagttcg 306 Query: 338 acgtggactccctggaccag 357 || ||||||| ||||||||| Sbjct: 307 acctggactcgctggaccag 326
>gb|AF139466.2|AF139466 Vigna radiata chlorophyll a/b binding protein CP29 (CipCp29) mRNA, complete cds; nuclear gene for chloroplast product Length = 1118 Score = 91.7 bits (46), Expect = 1e-15 Identities = 112/134 (83%) Strand = Plus / Plus Query: 224 ggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggcacgctcgtcggcg 283 ||||| |||||| |||||||||| ||||||| |||| || ||||| | || ||||| | Sbjct: 221 ggccgttgtggtaccccggcgcgaaggcgccggagtggctggacgggagccttgtcggtg 280 Query: 284 actacggcttcgaccccttcggcctcgggaagcccgcggagtacctgcagtacgacgtgg 343 ||||||| |||||||| ||||| |||||||||||||||||||| |||||| || ||| Sbjct: 281 actacgggttcgacccgttcgggctcgggaagcccgcggagtatttgcagtttgaactgg 340 Query: 344 actccctggaccag 357 |||| ||||||||| Sbjct: 341 actcgctggaccag 354
>gb|AY954738.1| Ostreococcus tauri chloroplast chlorophyll a/b-binding protein CP26 precursor Lhcb5 gene, complete cds; nuclear gene for chloroplast product Length = 1445 Score = 50.1 bits (25), Expect = 0.005 Identities = 46/53 (86%) Strand = Plus / Plus Query: 259 tacctcgacggcacgctcgtcggcgactacggcttcgaccccttcggcctcgg 311 ||||||||||| ||||||| || ||||||||||| ||||| |||||||||| Sbjct: 837 tacctcgacggtacgctcgcgggtgactacggctttgacccgctcggcctcgg 889
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Minus Query: 79 tcgtcggtggccgccgcggcgagcac 104 ||||||||||||| |||||||||||| Sbjct: 2881901 tcgtcggtggccgacgcggcgagcac 2881876
>ref|XM_960770.1| Encephalitozoon cuniculi GB-M1 hypothetical protein (ECU01_0290) partial mRNA Length = 447 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 23 cgcacgcaaaggccgaggagga 44 |||||||||||||||||||||| Sbjct: 71 cgcacgcaaaggccgaggagga 92
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 44.1 bits (22), Expect = 0.30 Identities = 28/30 (93%) Strand = Plus / Minus Query: 73 atggcttcgtcggtggccgccgcggcgagc 102 |||||||||||| ||||||| ||||||||| Sbjct: 1698526 atggcttcgtcgttggccgcggcggcgagc 1698497
>emb|AL391737.2|CNS06C8G chromosome I of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 209982 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 23 cgcacgcaaaggccgaggagga 44 |||||||||||||||||||||| Sbjct: 43884 cgcacgcaaaggccgaggagga 43863
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 260 acctcgacggcacgctcgtcg 280 ||||||||||||||||||||| Sbjct: 1426896 acctcgacggcacgctcgtcg 1426916
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 195 gaaggccaaggcgcccccgac 215 ||||||||||||||||||||| Sbjct: 10560 gaaggccaaggcgcccccgac 10540 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 174 caagaagaaggccccgccgaagaaggcc 201 |||||||||||| ||| ||||||||||| Sbjct: 3381360 caagaagaaggctccggcgaagaaggcc 3381387
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 261 cctcgacggcacgctcgtcggcgac 285 ||||||||||||||| ||||||||| Sbjct: 590998 cctcgacggcacgcttgtcggcgac 591022
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 87 ggccgccgcggcgagcacgttcctc 111 ||||||||||||| ||||||||||| Sbjct: 15345302 ggccgccgcggcgcgcacgttcctc 15345326
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 144 cgggcgcatcgtggcgcggtt 164 ||||||||||||||||||||| Sbjct: 5324906 cgggcgcatcgtggcgcggtt 5324886 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 243 cgcgcaggcgcccgagtacctcgac 267 |||||||||||||||| |||||||| Sbjct: 4490470 cgcgcaggcgcccgagcacctcgac 4490494
>gb|AY104614.1| Zea mays PCO084486 mRNA sequence Length = 1214 Score = 42.1 bits (21), Expect = 1.2 Identities = 36/41 (87%) Strand = Plus / Plus Query: 259 tacctcgacggcacgctcgtcggcgactacggcttcgaccc 299 |||||||| |||||||| ||||||||| ||||||||||| Sbjct: 352 tacctcgatggcacgctgcccggcgactatggcttcgaccc 392
>gb|AF333038.2| Streptomyces viridochromogenes Avilamycin A biosynthetic gene cluster, complete sequence Length = 59816 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 90 cgccgcggcgagcacgttcctcggg 114 |||||||||||||| |||||||||| Sbjct: 49515 cgccgcggcgagcatgttcctcggg 49539
>emb|Y13918.1|PABY13918 Pseudomonas aeruginosa phage phi CTX DNA, complete genome Length = 35559 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 167 gcttcggcaagaagaaggccc 187 ||||||||||||||||||||| Sbjct: 28419 gcttcggcaagaagaaggccc 28439
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 243 cgcgcaggcgcccgagtacctcgac 267 ||||||||||||| ||||||||||| Sbjct: 1798284 cgcgcaggcgccccagtacctcgac 1798260
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 182 aggccccgccgaagaaggcca 202 ||||||||||||||||||||| Sbjct: 2058063 aggccccgccgaagaaggcca 2058083
>emb|AL662972.3|OSJN00173 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063G07, complete sequence Length = 157622 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 87 ggccgccgcggcgagcacgttcctc 111 ||||||||||||| ||||||||||| Sbjct: 34186 ggccgccgcggcgcgcacgttcctc 34210
>gb|L27117.1|TRBH1C9AAA Trypanosoma cruzi histone H1 (H1.C9) mRNA, complete cds Length = 307 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 177 gaagaaggccccgccgaagaaggcc 201 |||||||||| |||||||||||||| Sbjct: 59 gaagaaggcctcgccgaagaaggcc 83 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 178 aagaaggccccgccgaagaaggcc 201 ||||||||| |||||||||||||| Sbjct: 45 aagaaggcctcgccgaagaaggcc 68
>gb|L27120.1|TRBH1C6AAA Trypanosoma cruzi histone H1 (H1.C6) mRNA, 3' end Length = 502 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 177 gaagaaggccccgccgaagaaggcc 201 |||||||||| |||||||||||||| Sbjct: 38 gaagaaggcctcgccgaagaaggcc 62 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 178 aagaaggccccgccgaagaaggcc 201 ||||||||| |||||||||||||| Sbjct: 24 aagaaggcctcgccgaagaaggcc 47
>dbj|AB008550.1| Pseudomonas aeruginosa phage phi CTX, complete genome sequence Length = 35580 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 167 gcttcggcaagaagaaggccc 187 ||||||||||||||||||||| Sbjct: 28419 gcttcggcaagaagaaggccc 28439
>ref|XM_550078.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2497 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 gctgtggttccccggcgcgc 247 |||||||||||||||||||| Sbjct: 159 gctgtggttccccggcgcgc 140
>ref|XM_493818.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1737 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 gtcggtggccgccgcggcgagcac 104 ||||| |||||||||||||||||| Sbjct: 1678 gtcggcggccgccgcggcgagcac 1701
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 ccccgccgaagaaggccaag 204 |||||||||||||||||||| Sbjct: 1966435 ccccgccgaagaaggccaag 1966454
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 gtcggtggccgccgcggcgagcac 104 ||||| |||||||||||||||||| Sbjct: 1687675 gtcggcggccgccgcggcgagcac 1687698
>emb|Z78205.1|BHT1UL Bovine herpesvirus type 1 UL22-35 genes Length = 37000 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 cggtggccgccgcggcgagc 102 |||||||||||||||||||| Sbjct: 3373 cggtggccgccgcggcgagc 3392
>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome Length = 135301 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 cggtggccgccgcggcgagc 102 |||||||||||||||||||| Sbjct: 34173 cggtggccgccgcggcgagc 34192
>ref|XM_801854.1| Trypanosoma cruzi strain CL Brener histone h1 (Tc00.1047053510225.10) partial mRNA Length = 435 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 177 gaagaaggccccgccgaagaaggc 200 |||||||||| ||||||||||||| Sbjct: 225 gaagaaggccgcgccgaagaaggc 248 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 178 aagaaggccccgccgaagaaggcc 201 ||||||||| |||||||||||||| Sbjct: 211 aagaaggcctcgccgaagaaggcc 234
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 tggcgcggttcggcttcggcaaga 178 ||||||| |||||||||||||||| Sbjct: 976065 tggcgcgattcggcttcggcaaga 976042
>gb|BC041922.1| Homo sapiens fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific), mRNA (cDNA clone IMAGE:5300179) Length = 1835 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 123 ggcggacccggcgccgcagaacgg 146 ||||||||||||||||| |||||| Sbjct: 841 ggcggacccggcgccgcggaacgg 864
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 ccccggcgcgcaggcgcccg 256 |||||||||||||||||||| Sbjct: 878907 ccccggcgcgcaggcgcccg 878888
>gb|AY046273.1| Trypanosoma cruzi histone H1 gene, partial cds Length = 249 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 177 gaagaaggccccgccgaagaaggc 200 |||||||||| ||||||||||||| Sbjct: 39 gaagaaggccgcgccgaagaaggc 62 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 178 aagaaggccccgccgaagaaggcc 201 ||||||||| |||||||||||||| Sbjct: 25 aagaaggcctcgccgaagaaggcc 48
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 gtcggtggccgccgcggcgagcac 104 ||||| |||||||||||||||||| Sbjct: 1687673 gtcggcggccgccgcggcgagcac 1687696
>gb|AF305082.1|AF305082 Homo sapiens alpha(1,3)-fucosyltransferase IV gene, promoter sequence, 5'UTR, and partial CDS Length = 3094 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 123 ggcggacccggcgccgcagaacgg 146 ||||||||||||||||| |||||| Sbjct: 2525 ggcggacccggcgccgcggaacgg 2502
>dbj|AK110783.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-C04, full insert sequence Length = 1949 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 gtcggtggccgccgcggcgagcac 104 ||||| |||||||||||||||||| Sbjct: 1806 gtcggcggccgccgcggcgagcac 1829
>dbj|AK103044.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117F21, full insert sequence Length = 3638 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 gctgtggttccccggcgcgc 247 |||||||||||||||||||| Sbjct: 580 gctgtggttccccggcgcgc 561
>dbj|AK063999.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-F06, full insert sequence Length = 2497 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 gctgtggttccccggcgcgc 247 |||||||||||||||||||| Sbjct: 159 gctgtggttccccggcgcgc 140
>dbj|AP000943.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-867G2, complete sequence Length = 192299 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 123 ggcggacccggcgccgcagaacgg 146 ||||||||||||||||| |||||| Sbjct: 47205 ggcggacccggcgccgcggaacgg 47182
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 ccccggcgcgcaggcgcccg 256 |||||||||||||||||||| Sbjct: 910277 ccccggcgcgcaggcgcccg 910258
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 tggccgccgcggcgagcacg 105 |||||||||||||||||||| Sbjct: 2557863 tggccgccgcggcgagcacg 2557844
>dbj|AB041774.1| Homo sapiens gene, 5' flanking region Length = 1098 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 123 ggcggacccggcgccgcagaacgg 146 ||||||||||||||||| |||||| Sbjct: 580 ggcggacccggcgccgcggaacgg 557
>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, clone:P0043E01 Length = 154128 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 gtcggtggccgccgcggcgagcac 104 ||||| |||||||||||||||||| Sbjct: 100138 gtcggcggccgccgcggcgagcac 100161 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,028,237 Number of Sequences: 3902068 Number of extensions: 2028237 Number of successful extensions: 47302 Number of sequences better than 10.0: 58 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45752 Number of HSP's gapped (non-prelim): 1548 length of query: 357 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 335 effective length of database: 17,147,199,772 effective search space: 5744311923620 effective search space used: 5744311923620 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
