Clone Information

BLAST Search Result

Clone Name	baet62b04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SNX11_MOUSE (Q91WL6) Sorting nexin-11	33	0.22
2	YNE1_CAEEL (P30640) Hypothetical protein R08D7.1	30	1.5
3	YL37_CAEEL (P34428) Hypothetical protein F44B9.7	30	1.9
4	OBF1_MOUSE (Q64693) POU domain class 2, associating factor 1 (B-...	29	2.5
5	SEN54_NEUCR (Q7SC91) Probable tRNA-splicing endonuclease subunit...	29	2.5
6	PPE30_MYCTU (P0A692) Hypothetical PPE-family protein PPE30	29	2.5
7	PPE30_MYCBO (P0A693) Hypothetical PPE-family protein PPE30	29	2.5
8	OTX2_MOUSE (P80206) Homeobox protein OTX2	29	2.5
9	DOF37_ARATH (Q43385) Dof zinc finger protein DOF3.7 (AtDOF3.7) (...	29	3.2
10	Y335_MYCPN (P75443) Hypothetical protein MPN335 (F10_orf741)	29	3.2
11	VSGP_EBOSM (P60173) Pre-small/secreted glycoprotein precursor (p...	29	3.2
12	VSGP_EBOSB (P60172) Pre-small/secreted glycoprotein precursor (p...	29	3.2
13	BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-assoc...	29	3.2
14	BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associa...	28	4.2
15	PTSRA_XENLA (Q6GND3) Protein PTDSR-A	28	4.2
16	POL_HV1RH (P05959) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	28	4.2
17	OTX2_HUMAN (P32243) Homeobox protein OTX2	28	4.2
18	BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-assoc...	28	4.2
19	CWC26_MAGGR (Q52F10) Pre-mRNA-splicing factor CWC26	28	4.2
20	CCND2_ARATH (P42752) Cyclin delta-2	28	5.5
21	INSM_ECOLI (Q47718) Transposase insM for insertion sequence elem...	28	5.5
22	CED7_CAEEL (P34358) ABC transporter ced-7 (Cell death protein 7)	28	7.2
23	K1210_HUMAN (Q9ULL0) Protein KIAA1210	28	7.2
24	PTPRG_MOUSE (Q05909) Receptor-type tyrosine-protein phosphatase ...	28	7.2
25	KELC_DROME (Q04652) Ring canal kelch protein [Contains: Kelch sh...	28	7.2
26	CN118_MOUSE (Q6PE65) Protein C14orf118 homolog	28	7.2
27	SOCS6_HUMAN (O14544) Suppressor of cytokine signaling 6 (SOCS-6)...	28	7.2
28	TCF8_CHICK (P36197) Transcription factor 8 (Delta-crystallin enh...	27	9.4
29	LPIN2_MOUSE (Q99PI5) Lipin-2	27	9.4
30	PAX6_DROME (O18381) Paired box protein Pax-6 (Protein eyeless)	27	9.4
31	PRP40_MOUSE (Q9R1C7) Pre-mRNA-processing factor 40 homolog A (Fo...	27	9.4
32	POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	27	9.4
33	FECA_ECOLI (P13036) Iron(III) dicitrate transport protein fecA p...	27	9.4
34	YMF9_YEAST (Q04958) Hypothetical UPF0028 protein YML059c	27	9.4
35	IF2_RHOS4 (Q3IYN5) Translation initiation factor IF-2	27	9.4
36	LIPB2_MOUSE (O35711) Liprin-beta-2 (Protein tyrosine phosphatase...	27	9.4
37	POL_HV1MN (P05961) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	27	9.4
38	DNB2_ADE02 (P03264) Early E2A DNA-binding protein	27	9.4
39	BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-assoc...	27	9.4

>SNX11_MOUSE (Q91WL6) Sorting nexin-11|
          Length = 271

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = -3

Query: 354 RXTPPLPPPFVSGRQSGLSLWYLIMSNAGTAFSLDELVDAASLPIAWTSRRPRIKIGLRP 175
           R + P PP  +S  +  L  W  +M + G +     L+ ++SLP  W   RP   + +  
Sbjct: 189 RRSSPSPP--LSEEKEQLETWAPVMDSEGPSSESPTLLPSSSLPACWDPARPEEGLSVSQ 246

Query: 174 TAR 166
            AR
Sbjct: 247 PAR 249

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>YNE1_CAEEL (P30640) Hypothetical protein R08D7.1|
          Length = 458

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -2

Query: 241 RRGVPANRVDLEEATHQNWPPANRSRRQVPSSCAEQSLSSPSPVRPHG--TNKRRTRNLQ 68
           RR  P  R D  ++   N PP NRSRR   +S   +  SSP+  R     +  R++R ++
Sbjct: 177 RRSPPRTRRDRHDS--DNSPPRNRSRRDSDNSPPRRRPSSPARRRKDDDLSPPRKSRKIE 234

Query: 67  E 65
           E
Sbjct: 235 E 235

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>YL37_CAEEL (P34428) Hypothetical protein F44B9.7|
          Length = 466

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +1

Query: 202 PPRGPRDWQGRRVDELIQTESRSRIGHDEVPKAQPGLPPA 321
           PP GP  + G ++ +       +R G    P   PG+PP+
Sbjct: 49  PPGGPPPFMGIQIKQEPMWSQENRYGMQAGPSGMPGMPPS 88

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>OBF1_MOUSE (Q64693) POU domain class 2, associating factor 1 (B-cell-specific|
           coactivator OBF-1) (OCT binding factor 1) (BOB-1) (BOB1)
           (OCA-B)
          Length = 256

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 175 WPEANFDAWPPRGPRDWQGRRVDELIQTESRSRIGHDEVPKAQP 306
           W ++      P  PR +QG RV E ++   R + GH  V  A P
Sbjct: 3   WQKSTAPEQAPAPPRPYQGVRVKEPVKELLRRKRGHTSVGAAGP 46

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>SEN54_NEUCR (Q7SC91) Probable tRNA-splicing endonuclease subunit sen-54|
           (tRNA-intron endonuclease sen-54)
          Length = 566

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +1

Query: 112 REREKRVIAQRRRKEPAFSSGWPEA-NFDAWPPRGPRDWQGRRVDELIQTESRSRIGHDE 288
           R+  + V++  R      +SGW     F  W    P DW+ +++ +      +   G D+
Sbjct: 89  RDAMRDVLSYTRVHNTKSASGWCRGWYFPDWWKDWPEDWEQQKLTK----RGKEGAGEDD 144

Query: 289 VPKAQPGLPPAHERWR 336
             +    LPP H R R
Sbjct: 145 EEEKDRKLPPLHVRDR 160

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>PPE30_MYCTU (P0A692) Hypothetical PPE-family protein PPE30|
          Length = 463

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 28/85 (32%), Positives = 36/85 (42%)
 Frame = +2

Query: 92  VRSVRTNGRGRRE*LLSAGGRNLPSRAVGRRPILMRGLLEVHAIGRDAASTSSSKLKAVP 271
           +RS  ++G G     +SAG     S  VG   +         AI   AA  SS+ L+AVP
Sbjct: 292 LRSAISSGLGSTAPAISAGASQAGS--VGGMSVPPSWAAATPAIRTVAAVFSSTGLQAVP 349

Query: 272 ALDMMRYQRLSPDCLPLTNGGGSGG 346
           A  +     LS   L    GG  GG
Sbjct: 350 AAAISEGSLLSQMALASVAGGALGG 374

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>PPE30_MYCBO (P0A693) Hypothetical PPE-family protein PPE30|
          Length = 463

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 28/85 (32%), Positives = 36/85 (42%)
 Frame = +2

Query: 92  VRSVRTNGRGRRE*LLSAGGRNLPSRAVGRRPILMRGLLEVHAIGRDAASTSSSKLKAVP 271
           +RS  ++G G     +SAG     S  VG   +         AI   AA  SS+ L+AVP
Sbjct: 292 LRSAISSGLGSTAPAISAGASQAGS--VGGMSVPPSWAAATPAIRTVAAVFSSTGLQAVP 349

Query: 272 ALDMMRYQRLSPDCLPLTNGGGSGG 346
           A  +     LS   L    GG  GG
Sbjct: 350 AAAISEGSLLSQMALASVAGGALGG 374

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>OTX2_MOUSE (P80206) Homeobox protein OTX2|
          Length = 289

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 247 ARRRGVPANRVDLEEATH-QNWPPANRSRRQVPSSCAEQSLSSPSPVRP 104
           A+++  PA  V  E  T  Q  PP++ S   + SS A  S+ SP+ + P
Sbjct: 111 AKKKSSPAREVSSESGTSGQFTPPSSTSVPTIASSSAPVSIWSPASISP 159

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>DOF37_ARATH (Q43385) Dof zinc finger protein DOF3.7 (AtDOF3.7) (Dof affecting|
           germination 1) (Transcription factor BBFa) (AtBBFa)
           (RolB domain B factor a)
          Length = 296

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/69 (23%), Positives = 28/69 (40%)
 Frame = -2

Query: 298 PLVPHHVQCGNGFQFG*ARRRGVPANRVDLEEATHQNWPPANRSRRQVPSSCAEQSLSSP 119
           P +P + Q  N   F     +G+  N ++  +    N    N + R +      + LSS 
Sbjct: 213 PTMPDYKQSNNNLSFSIDHHQGIGHNTINSNQRAQDNNDDMNGASRVLFPFSDMKELSST 272

Query: 118 SPVRPHGTN 92
           +  + HG N
Sbjct: 273 TQEKSHGNN 281

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>Y335_MYCPN (P75443) Hypothetical protein MPN335 (F10_orf741)|
          Length = 741

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 17/91 (18%), Positives = 37/91 (40%)
 Frame = +1

Query: 58  QFFPVNFVSASCSFRADEREREKRVIAQRRRKEPAFSSGWPEANFDAWPPRGPRDWQGRR 237
           +FF    + +   + A+E+ER+++   ++  K+        + N  +  P          
Sbjct: 390 KFFSDTIIQSFRDYEAEEKERQEKEEKEKAEKDNGNGQDSNKVNSVSTEPNNKNSSDADS 449

Query: 238 VDELIQTESRSRIGHDEVPKAQPGLPPAHER 330
            D    ++S+ +      PK +P LP   +R
Sbjct: 450 KDNNDSSDSQGKDSSKSKPKFRPRLPQFFDR 480

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>VSGP_EBOSM (P60173) Pre-small/secreted glycoprotein precursor (pre-sGP)|
           [Contains: Small/secreted glycoprotein (sGP);
           Delta-peptide]
          Length = 372

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +1

Query: 67  PVNFVSASCSFRADEREREKRVIAQRRRKEPAFSSGWPEANFDAWPPRGPRDW 225
           P N+V  SC  +     R+K ++  RR  +   S   P  +   W  R P  W
Sbjct: 298 PNNYVEKSCLSKLYRSTRQKTMMRHRRELQREESPTGPPGSIRTWFQRIPLGW 350

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>VSGP_EBOSB (P60172) Pre-small/secreted glycoprotein precursor (pre-sGP)|
           [Contains: Small/secreted glycoprotein (sGP);
           Delta-peptide]
          Length = 372

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = +1

Query: 67  PVNFVSASCSFRADEREREKRVIAQRRRKEPAFSSGWPEANFDAWPPRGPRDW 225
           P N+V  SC  +     R+K ++  RR  +   S   P  +   W  R P  W
Sbjct: 298 PNNYVEKSCLSKLYRSTRQKTMMRHRRELQREESPTGPPGSIRTWFQRIPLGW 350

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>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2160

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = +1

Query: 145 RRKEPAFSSGWPEANFDAWPPRGPRDWQGRRVDELIQTESRSRIGHDEVPKAQPGLPPAH 324
           + +E A  S  P  +         RD  GR  DEL   +S+   GHD     QP  PP  
Sbjct: 184 KERESAEQSSGPGPSLRPQNSTTWRDGGGRGPDELEGPDSKLHHGHDPRGALQPSGPPQF 243

Query: 325 ERWR 336
             +R
Sbjct: 244 PPYR 247

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>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2161

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = +1

Query: 145 RRKEPAFSSGWPEANFDAWPPRGPRDWQGRRVDELIQTESRSRIGHDEVPKAQPGLPPAH 324
           + +E A  S  P  +         RD  GR  DEL   +S+   GHD     QP  PP  
Sbjct: 184 KERESAEQSSGPGPSLRPQNSTTWRDGGGRGPDELEGPDSKLHHGHDPRGGLQPSGPPQF 243

Query: 325 ERWR 336
             +R
Sbjct: 244 PPYR 247

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>PTSRA_XENLA (Q6GND3) Protein PTDSR-A|
          Length = 403

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
 Frame = -2

Query: 226 ANRVDLEEAT----HQNWPPANRSRRQVPSSCAEQSLSSPSPVRPHGTNKRRTRNLQE 65
           A+ VDL+EAT      +   ++ S      SC+E  LSS + +  H   KR+  ++ E
Sbjct: 327 ADTVDLQEATGIASDSSSDSSSSSSSSSSESCSEDDLSSGAEMMSHRKKKRKICSVME 384

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>POL_HV1RH (P05959) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix protein|
            p17 (MA); Capsid protein p24 (CA); p2 spacer peptide;
            Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6
            pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse
            trans
          Length = 1435

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 21/76 (27%), Positives = 29/76 (38%)
 Frame = +1

Query: 109  EREREKRVIAQRRRKEPAFSSGWPEANFDAWPPRGPRDWQGRRVDELIQTESRSRIGHDE 288
            E E   ++I Q  +KE  +          AW P         +VD L+ T  R  +  D 
Sbjct: 1101 ESELVSQIIEQLIKKEKVYL---------AWVPAHKGIGGNEQVDRLVSTGIRKVLFLDG 1151

Query: 289  VPKAQPGLPPAHERWR 336
            + KAQ      H  WR
Sbjct: 1152 IDKAQDEHEKYHSNWR 1167

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>OTX2_HUMAN (P32243) Homeobox protein OTX2|
          Length = 289

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -2

Query: 247 ARRRGVPANRVDLEEATH-QNWPPANRSRRQVPSSCAEQSLSSPSPVRP 104
           A+++  PA  V  E  T  Q  PP++ S   + SS A  S+ SP+ + P
Sbjct: 111 AKKKTSPAREVSSESGTSGQFTPPSSTSVPTIASSSAPVSIWSPASISP 159

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>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2157

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 20/64 (31%), Positives = 26/64 (40%)
 Frame = +1

Query: 145 RRKEPAFSSGWPEANFDAWPPRGPRDWQGRRVDELIQTESRSRIGHDEVPKAQPGLPPAH 324
           + +E A  S  P  +         RD  GR  DEL   +S+   GHD     QP  PP  
Sbjct: 184 KERESAEQSSGPGPSLRPQNSTTWRDGGGRGPDELEGPDSKLHHGHDPRGGLQPSGPPQF 243

Query: 325 ERWR 336
             +R
Sbjct: 244 PPYR 247

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>CWC26_MAGGR (Q52F10) Pre-mRNA-splicing factor CWC26|
          Length = 352

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = +1

Query: 100 RADEREREKRVIAQRR--RKEPAFSSGWPEANFDAWPPRGPRDWQGRRVDELIQTESRSR 273
           RA+E+ + +R  A+RR  R     SSG  E  F        RD  GRR+D  +Q E + +
Sbjct: 161 RAEEKAQYERERAERRAARGGGGDSSGEEETVF--------RDATGRRIDVTLQREQKRK 212

Query: 274 IGHDEVPKAQPGLPPAHERWRQRRR 348
              ++   A+  L    +    RRR
Sbjct: 213 AEAEKQRAAKEALKGEVQIEEARRR 237

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>CCND2_ARATH (P42752) Cyclin delta-2|
          Length = 361

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -2

Query: 238 RGVPANRVDLEEATHQNWPPANRSRRQVPSSCAEQSLSSPSPVRPHGTNKRRTR 77
           R VPA+ V + EAT  ++    RS  +   SC   S SSP     +  + +R R
Sbjct: 310 RAVPASPVGVLEATCLSY----RSEERTVESCTNSSQSSPDNNNNNNNSNKRRR 359

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>INSM_ECOLI (Q47718) Transposase insM for insertion sequence element IS600|
          Length = 198

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 122 RRE*LLSAG--GRNLPSRAVGRRPILMRGLLEVHAIGRDAASTSS 250
           R+E  L++G   +N P +  GRR +L   +LE+H I   +A   S
Sbjct: 6   RKECPLNSGYLRKNRPEKPDGRRAVLRSQVLELHGISHGSAGARS 50

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>CED7_CAEEL (P34358) ABC transporter ced-7 (Cell death protein 7)|
          Length = 1704

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 229 GRRVDELIQTESRSRIGHDEVPKAQPGLPPA 321
           G +VD+ I +   SRI H+    ++P L PA
Sbjct: 878 GDKVDKAIASRQNSRISHNSRNASEPSLKPA 908

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>K1210_HUMAN (Q9ULL0) Protein KIAA1210|
          Length = 1093

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
 Frame = -2

Query: 247 ARRRGVPANRVDLEEATHQNWPPANRSRRQVPSSCAEQSLSSPS-----PVRPHGTNKRR 83
           A+  G P N+ ++  A++      N   +Q+PS C  Q + +P+     P    GT+ ++
Sbjct: 263 AQALGKPKNQQEVSSASNNTPEEQNDFMQQLPSRCPSQPIMNPTVQQQVPTSSVGTSIKQ 322

Query: 82  TRNLQ 68
           + +++
Sbjct: 323 SDSVE 327

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>PTPRG_MOUSE (Q05909) Receptor-type tyrosine-protein phosphatase gamma precursor|
           (EC 3.1.3.48) (Protein-tyrosine phosphatase gamma)
           (R-PTP-gamma)
          Length = 1442

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 19/71 (26%), Positives = 26/71 (36%)
 Frame = -2

Query: 298 PLVPHHVQCGNGFQFG*ARRRGVPANRVDLEEATHQNWPPANRSRRQVPSSCAEQSLSSP 119
           P  PH      G Q    RR+   A   D       +  P   +  QVP +  E+  S  
Sbjct: 626 PSSPHRTAAEGGHQTIPGRRQDHSAPATDQPGHVAPDLDPLVDTATQVPPTATEEHYSGS 685

Query: 118 SPVRPHGTNKR 86
            P RP   +K+
Sbjct: 686 DPRRPEMPSKK 696

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>KELC_DROME (Q04652) Ring canal kelch protein [Contains: Kelch short protein]|
          Length = 1477

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -2

Query: 283  HVQCGNGFQFG*ARRRGVPANRVDLEEATHQNWPPANRSRRQVPSSCAEQ 134
            HVQ  NGF+FG +R         D     HQ  P   R+R + P+   +Q
Sbjct: 1333 HVQWQNGFEFGRSR-------DYDPNSTYHQQRPLLQRARSESPTFSNQQ 1375

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>CN118_MOUSE (Q6PE65) Protein C14orf118 homolog|
          Length = 482

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -2

Query: 247 ARRRGVPANRVDLEEATHQNWPPANRSRRQVPSSCAEQSLSSPSPVRP 104
           + RR  PA+    + + H   PP  R  ++     A  S SSPSPV P
Sbjct: 381 SHRRCSPAHCSARQASVHWG-PPCPRDIKRKRKPVASASFSSPSPVHP 427

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>SOCS6_HUMAN (O14544) Suppressor of cytokine signaling 6 (SOCS-6) (Suppressor of|
           cytokine signaling 4) (SOCS-4) (Cytokine-inducible SH2
           protein 4) (CIS-4)
          Length = 535

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 271 RIGHDEVPKAQPGLPPAHERWRQR 342
           R GHD+VP   P LPP      QR
Sbjct: 301 RAGHDDVPPLSPLLPPMQNNQIQR 324

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>TCF8_CHICK (P36197) Transcription factor 8 (Delta-crystallin enhancer-binding|
           factor) (Delta EF1)
          Length = 1114

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 223 NRVDLEEATHQNWPPANRSRRQVPSSCAEQSLSSPSPVRPHGTNKRRTRNLQ 68
           N  + + +T+ +  PAN S+ Q  S  + Q+ S  S   P   N   +RN Q
Sbjct: 666 NESEPQNSTNNSQNPANTSKSQTSSGGSTQNGSRSSTPSPSPLNLSSSRNSQ 717

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>LPIN2_MOUSE (Q99PI5) Lipin-2|
          Length = 893

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 5/51 (9%)
 Frame = +1

Query: 163 FSSGWPEANFDAW-----PPRGPRDWQGRRVDELIQTESRSRIGHDEVPKA 300
           F    P+A  ++W     P +  R W  R+ + +I+    ++ G  EVP A
Sbjct: 531 FQKSLPKATVESWVKDKMPKKSGRWWFWRKKESMIKQLPETKEGKSEVPPA 581

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>PAX6_DROME (O18381) Paired box protein Pax-6 (Protein eyeless)|
          Length = 857

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 232 VPANRVDLEEATHQNWPPANRSRRQVPSSCAEQSLSS 122
           V  N   L++   Q+WPP + S    P+S +E  +SS
Sbjct: 304 VHGNHQALQQHQQQSWPPRHYSGSWYPTSLSEIPISS 340

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>PRP40_MOUSE (Q9R1C7) Pre-mRNA-processing factor 40 homolog A (Formin-binding|
           protein 3) (Formin-binding protein 11) (FBP 11)
          Length = 953

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 5/66 (7%)
 Frame = +1

Query: 103 ADEREREKRVIAQRRRKEPAFSS----GWPEANFDA-WPPRGPRDWQGRRVDELIQTESR 267
           A EREREK    + +RKE AF S      P    DA W     R  +    +++     R
Sbjct: 726 AREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRERFVKEPAFEDITLESER 785

Query: 268 SRIGHD 285
            RI  D
Sbjct: 786 KRIFKD 791

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>POL_HV1JR (P20875) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix protein|
            p17 (MA); Capsid protein p24 (CA); p2 spacer peptide;
            Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6
            pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse
            trans
          Length = 1438

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 20/76 (26%), Positives = 29/76 (38%)
 Frame = +1

Query: 109  EREREKRVIAQRRRKEPAFSSGWPEANFDAWPPRGPRDWQGRRVDELIQTESRSRIGHDE 288
            E E   ++I Q  +KE  +          AW P         +VD+L+    R  +  D 
Sbjct: 1104 ESELVSQIIEQLIKKEKVYL---------AWVPAHKGIGGNEQVDKLVSAGIRKVLFLDG 1154

Query: 289  VPKAQPGLPPAHERWR 336
            + KAQ      H  WR
Sbjct: 1155 IDKAQEDHEKYHSNWR 1170

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>FECA_ECOLI (P13036) Iron(III) dicitrate transport protein fecA precursor|
          Length = 774

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +2

Query: 86  PLVRSVRTNGRGRRE*LLSAGGRNLPSRAVGRRPILMRGL-LEVHAIGRDAASTSSSKLK 262
           P V +   NG G  +  ++ G R L  R   R  +LM G+ +     G+   S +   L 
Sbjct: 161 PGVSAPENNGTGSHDLAMNFGIRGLNPRLASRSTVLMDGIPVPFAPYGQPQLSLAPVSLG 220

Query: 263 AVPALDMMR 289
            + A+D++R
Sbjct: 221 NMDAIDVVR 229

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>YMF9_YEAST (Q04958) Hypothetical UPF0028 protein YML059c|
          Length = 1679

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 281 MMRYQRLSPDCLPLTNGGGSG 343
           + +Y+RL+P+ LPL N G SG
Sbjct: 129 LSQYKRLTPEFLPLENTGKSG 149

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>IF2_RHOS4 (Q3IYN5) Translation initiation factor IF-2|
          Length = 836

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 14/99 (14%)
 Frame = +1

Query: 100 RADEREREKRVIAQRRRKEPAFSSGWPEANFDAWPPRGPRDWQGRRVDELIQT------- 258
           R +ER+R +  +  + R+E   +    +   D    R   +   RR +E  +        
Sbjct: 105 REEERQRRREELEAKEREERERAEALRQKAEDEERARREAEEAARRAEEAKRAPAPAAPQ 164

Query: 259 ----ESRSRIGHDEVPKAQPGLPPA---HERWRQRRRXT 354
               ESR+       P A+PGLPP+    ER   R R T
Sbjct: 165 PAPAESRA----SAPPSAKPGLPPSRKEREREADRDRTT 199

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>LIPB2_MOUSE (O35711) Liprin-beta-2 (Protein tyrosine phosphatase receptor type|
           f polypeptide-interacting protein binding protein 2)
           (PTPRF-interacting protein binding protein 2)
           (Coiled-coil-like protein 1)
          Length = 882

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -2

Query: 205 EATHQNWPPANRSRRQVPSSCAEQSLSSPSPVRPHGTNKRRTRNLQEKI 59
           E + + W   N+S  +VP        SSP+P  P    K      Q+K+
Sbjct: 335 EGSFRKWNTTNKSPEEVPKQEISPRCSSPTPGPPPLPQKSLESRAQKKL 383

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>POL_HV1MN (P05961) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix protein|
            p17 (MA); Capsid protein p24 (CA); p2 spacer peptide;
            Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6
            pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse
            trans
          Length = 1440

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 20/76 (26%), Positives = 29/76 (38%)
 Frame = +1

Query: 109  EREREKRVIAQRRRKEPAFSSGWPEANFDAWPPRGPRDWQGRRVDELIQTESRSRIGHDE 288
            E E   ++I Q  +KE  +          AW P         +VD+L+    R  +  D 
Sbjct: 1106 ESELVSQIIEQLIKKEKVYL---------AWVPAHKGIGGNEQVDKLVSAGIRKVLFLDG 1156

Query: 289  VPKAQPGLPPAHERWR 336
            + KAQ      H  WR
Sbjct: 1157 IDKAQEDHEKYHSNWR 1172

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>DNB2_ADE02 (P03264) Early E2A DNA-binding protein|
          Length = 529

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = -2

Query: 208 EEATHQNWPPANRSRRQVPSSCAEQSLSSPSPVRPHGTNKRRTRNLQE 65
           EE   +  P   R   + P +  + S  SPSP  P    K+R R   E
Sbjct: 5   EEEQRETTPERGRGAARRPPTMEDVSSPSPSPPPPRAPPKKRLRRRLE 52

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>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2158

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 19/64 (29%), Positives = 26/64 (40%)
 Frame = +1

Query: 145 RRKEPAFSSGWPEANFDAWPPRGPRDWQGRRVDELIQTESRSRIGHDEVPKAQPGLPPAH 324
           + +E A  S  P  +         RD  GR  D+L   +S+   GHD     QP  PP  
Sbjct: 184 KERESAEQSSGPGPSLRPQNSTTWRDGGGRGPDDLEGPDSKLHHGHDPRGGLQPSGPPQF 243

Query: 325 ERWR 336
             +R
Sbjct: 244 PPYR 247


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,131,870
Number of Sequences: 219361
Number of extensions: 997098
Number of successful extensions: 4227
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 4034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4226
length of database: 80,573,946
effective HSP length: 94
effective length of database: 59,954,012
effective search space used: 1438896288
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result