>Y157_AQUAE (O66547) Hypothetical protein aq_157 precursor|
          Length = 162

 Score = 33.1 bits (74), Expect = 0.34
 Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
 Frame = +1

Query: 127 EQEFRRMLDLYP-VVRSRDYCKDELESSSKGTTQQEQAQEIKGTKKKAAEDLFLRKLKMA 303
           + E R+ L+ Y  +++ +    + L+ S +     E+A+E K  + +  ED  LRKL++ 
Sbjct: 43  QTELRKELEKYQKLIQEKQKKLEALKKSLESKALSEKAKEKKAKEIEQLEDE-LRKLQVE 101

Query: 304 AEKKVGATKAELFCKTFEE 360
           A+ K+   KAEL    F++
Sbjct: 102 AQSKLSRKKAELEKMVFDK 120

>NCAP_BSCR3 (Q3I5I7) Nucleocapsid protein (N structural protein) (NC)|
          Length = 421

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 19/48 (39%), Positives = 27/48 (56%)
 Frame = +1

Query: 190 DELESSSKGTTQQEQAQEIKGTKKKAAEDLFLRKLKMAAEKKVGATKA 333
           ++LES   G +QQ+Q Q +  TKK AAE     + K  A K+   T+A
Sbjct: 228 NQLESKVSGRSQQQQGQTV--TKKSAAEASKKPRQKRTATKQYNVTQA 273

>INO80_DEBHA (Q6BGY8) Putative DNA helicase INO80 (EC 3.6.1.-)|
          Length = 1364

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +1

Query: 190  DELESSSKGTTQQEQAQEIKGTKKKAAEDLFLRKLKMAAEKKVGATKAELFCKTFEEAHE 369
            +EL+++    +     +E+   KKK  ED+ +  +K AAE  V A    + C      H+
Sbjct: 1016 NELQNNHALISNSTYLKELYSIKKKVYEDMVINNMKPAAEPLVKAPPVAVVCDNISFVHD 1075

>TPM_CHLNI (O02389) Tropomyosin|
          Length = 284

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
 Frame = +1

Query: 190 DELESSSKGTTQQEQAQEI-KGTKKKAAEDLFLRKLKMAAEKKVGATKAELFCKTFEEAH 366
           ++LE +SK   + E+ +++ +G    A E + + + ++   K V AT A+   + F+EA 
Sbjct: 111 EKLEEASKAADESERNRKVLEGRSNTAEERIDVLEKQLETAKNV-ATDAD---QKFDEAA 166

Query: 367 ERLVYKELDLDAAXRFLSA 423
            +L   E+DL+ A   L A
Sbjct: 167 RKLAITEVDLERAETRLEA 185

>Y329_METJA (Q57775) Hypothetical protein MJ0329|
          Length = 616

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
 Frame = +1

Query: 133 EFRRMLDLYPVVRSRDYCKD-ELESSSKGTTQ--QEQAQEIKGTKKKAAEDLFLRKLKMA 303
           EF  +L  YP +  ++  K  ++    KG  +   E+ Q++   K+K+ E + + KL+  
Sbjct: 361 EFGEILAAYPDLTEKEVEKLLKMAKEGKGGLEYADEEKQKLLEKKRKSLEKI-ISKLEKV 419

Query: 304 AEKKVGATKAELFCKTFEEAHERLVYKELDLD 399
            +K  G    E F     E +ERL Y EL  D
Sbjct: 420 GDK-FGKKSMENFVNWILETYERLGYNELMQD 450

>RABE1_HUMAN (Q15276) Rab GTPase-binding effector protein 1 (Rabaptin-5)|
           (Rabaptin-5alpha) (Rabaptin-4) (NY-REN-17 antigen)
          Length = 862

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
 Frame = +1

Query: 175 RDYCKDELESSSKGTTQQEQAQEIKGTKKKAAEDL-FLRKLKMAAEKKVGATKAELFCKT 351
           R+Y + E+    +  ++ ++ + ++   KKA ED   LR + M  EK++ A K +L    
Sbjct: 147 REYAEREIADLRRRLSEGQEEENLENEMKKAQEDAEKLRSVVMPMEKEIAALKDKL---- 202

Query: 352 FEEAHERLVYKELD 393
             EA +++  KEL+
Sbjct: 203 -TEAEDKI--KELE 213

>VGLB_MCMVS (P27171) Glycoprotein B precursor|
          Length = 928

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 262 SFWFLLSPELALAVWCL--CLMIPIHPCSSRGTERRGRDRACAET 134
           S W+ +S  LA+ +WCL  C    I   S+ GT  + +    +ET
Sbjct: 12  SSWYAMSTALAVTIWCLLACTSEVIAAASTPGTTPKAKTDTSSET 56

>NCAP_CVHSA (P59595) Nucleocapsid protein (N structural protein) (NC)|
          Length = 422

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +1

Query: 190 DELESSSKGTTQQEQAQEIKGTKKKAAEDLFLRKLKMAAEKKVGATKA 333
           ++LES   G  QQ+Q Q +  TKK AAE     + K  A K+   T+A
Sbjct: 229 NQLESKVSGKGQQQQGQTV--TKKSAAEASKKPRQKRTATKQYNVTQA 274

>TPM_HELAS (O97192) Tropomyosin (Allergen Hel as 1)|
          Length = 284

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 21/78 (26%), Positives = 38/78 (48%)
 Frame = +1

Query: 190 DELESSSKGTTQQEQAQEIKGTKKKAAEDLFLRKLKMAAEKKVGATKAELFCKTFEEAHE 369
           ++LE +SK   + E+ +++  ++  A ++          E K  A  AE   + F+EA  
Sbjct: 111 EKLEEASKAADESERGRKVLESRSLADDERLDGLEAQLKEAKYIAEDAE---RKFDEAAR 167

Query: 370 RLVYKELDLDAAXRFLSA 423
           +L   E+DL+ A   L A
Sbjct: 168 KLAITEVDLERAEARLEA 185

>MST2_DROHY (Q08696) Axoneme-associated protein mst101(2)|
          Length = 1391

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
 Frame = +1

Query: 190 DELESSSKGTTQQEQAQEIKGTKKKAAE----DLFLRKLKMAAEKKVGATKAELFCKTFE 357
           +EL  + K   ++++ +E    +K+AAE    +   +K+K AAEKK    K E   K  +
Sbjct: 432 EELAKNIKKAAEKKKCKEAAKKEKEAAERKKCEELAKKIKKAAEKK----KCEETAKKGK 487

Query: 358 EAHERLVYKEL 390
           E  ER   +EL
Sbjct: 488 EVAERKKCEEL 498

>BRE1_DROME (Q9VRP9) Ubiquitin-protein ligase Bre1 (EC 6.3.2.-) (dBre1)|
          Length = 1044

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
 Frame = +1

Query: 115 ATMDEQEFRRMLDLYPVVRSRDYCKDELESSSKGTTQQ-----EQAQEIKGTK----KKA 267
           A  D++E + +LD+Y  V      K +L ++ K    +     +Q ++++ +K    KK 
Sbjct: 681 ALNDQKEMKLLLDMYKGVSKDQRDKVQLMATEKKLRSEIEELRQQLKKLQESKREERKKL 740

Query: 268 AEDLFLRKLKMAAEKK 315
           A++  LRK+K   E+K
Sbjct: 741 ADEEALRKIKQLEEQK 756

>TPM_PERVI (Q9GZ70) Tropomyosin|
          Length = 284

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 21/77 (27%), Positives = 37/77 (48%)
 Frame = +1

Query: 193 ELESSSKGTTQQEQAQEIKGTKKKAAEDLFLRKLKMAAEKKVGATKAELFCKTFEEAHER 372
           +LE +SK   + E+ +++        ++   +  K   E K  A +A+   K +EEA  +
Sbjct: 112 KLEEASKAADESERNRKVLENLNSGNDERIDQLEKQLTEAKWIAEEAD---KKYEEAARK 168

Query: 373 LVYKELDLDAAXRFLSA 423
           L   E+DL+ A   L A
Sbjct: 169 LAITEVDLERAEARLEA 185

>APOC2_CANFA (P12278) Apolipoprotein C-II precursor (Apo-CII) (ApoC-II)|
          Length = 101

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +1

Query: 187 KDELESSSKGTTQQEQAQEIKGTKKKAAEDLFLRKLKMAAEKKV 318
           +DE  SS+  T  QE      GT + AAEDL+ +      ++K+
Sbjct: 28  QDETTSSALLTQMQESLYSYWGTARSAAEDLYKKAYPTTMDEKI 71

>TPM_MIMNO (Q9GZ69) Tropomyosin|
          Length = 284

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 21/78 (26%), Positives = 37/78 (47%)
 Frame = +1

Query: 190 DELESSSKGTTQQEQAQEIKGTKKKAAEDLFLRKLKMAAEKKVGATKAELFCKTFEEAHE 369
           ++LE +SK   + E+ +++   +  + E+      K     K  AT A+     F+EA  
Sbjct: 111 EKLEEASKAADESERNRKVLEGRSNSYEERIDELEKQLETAKNVATDAD---HKFDEAAR 167

Query: 370 RLVYKELDLDAAXRFLSA 423
           +L   E+DL+ A   L A
Sbjct: 168 KLAITEVDLERAETRLEA 185

>IF3A_YEAST (P38249) Eukaryotic translation initiation factor 3 110 kDa subunit|
           (eIF3 p110) (Translation initiation factor eIF3, p110
           subunit) (eIF3a)
          Length = 964

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
 Frame = +1

Query: 187 KDELESSSK------GTTQQEQAQEIKGTKKKAAEDLFLRKLKMAAEKKVGATKAELFCK 348
           KD+LE  SK        +Q+++ + ++     A +D  +R+ ++  EK     K E    
Sbjct: 591 KDDLEKISKIVDERVKRSQEQKQKHMEHAALHAEQDAEVRQQRILEEKAAIEAKLE---- 646

Query: 349 TFEEAHERLVYKE 387
             EEAH RL+ K+
Sbjct: 647 --EEAHRRLIEKK 657

>TPM_MYTGA (P91958) Tropomyosin|
          Length = 284

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 25/102 (24%), Positives = 46/102 (45%)
 Frame = +1

Query: 118 TMDEQEFRRMLDLYPVVRSRDYCKDELESSSKGTTQQEQAQEIKGTKKKAAEDLFLRKLK 297
           +M E++  +  + Y    S+      LE +SK   + E+ +++        ++   +  K
Sbjct: 93  SMLEEDIMKSEERYTTAASK------LEEASKAADESERNRKVLENLNCGNDERIDQLEK 146

Query: 298 MAAEKKVGATKAELFCKTFEEAHERLVYKELDLDAAXRFLSA 423
              E K  A +A+   K +EEA  +L   E+DL+ A   L A
Sbjct: 147 QLTEAKWIAEEAD---KKYEEAARKLAITEVDLERAEARLEA 185

>TPM_MYTED (Q25457) Tropomyosin|
          Length = 284

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 25/102 (24%), Positives = 46/102 (45%)
 Frame = +1

Query: 118 TMDEQEFRRMLDLYPVVRSRDYCKDELESSSKGTTQQEQAQEIKGTKKKAAEDLFLRKLK 297
           +M E++  +  + Y    S+      LE +SK   + E+ +++        ++   +  K
Sbjct: 93  SMLEEDIMKSEERYTTAASK------LEEASKAADESERNRKVLENLNCGNDERIDQLEK 146

Query: 298 MAAEKKVGATKAELFCKTFEEAHERLVYKELDLDAAXRFLSA 423
              E K  A +A+   K +EEA  +L   E+DL+ A   L A
Sbjct: 147 QLTEAKWIAEEAD---KKYEEAARKLAITEVDLERAEARLEA 185

>MST3_DROHY (O01395) Axoneme-associated protein mst101(3)|
          Length = 275

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
 Frame = +1

Query: 193 ELESSSKGTTQQEQAQEI-----KGTKKKAAEDLFLRKL-KMAAEKKVGATKAELFCKTF 354
           EL+       ++E+  E+     +  KKKAAE+   +K  ++AA+KK     A+  C   
Sbjct: 171 ELQQKCAALAKKEKEAEMMKKCEEAAKKKAAEEAAKKKAEEVAAKKKADEAAAKKKCAEA 230

Query: 355 EEAHERLVYKELDLDAAXR 411
           ++  E    K++  +AA +
Sbjct: 231 KKKAEEAALKKMCEEAALK 249

>RS18_MYCPE (Q8EWT5) 30S ribosomal protein S18|
          Length = 154

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
 Frame = +1

Query: 202 SSSKGTTQQEQAQEIKGTKKKA-------AEDLFLRKLKMAAEKKVGATKAELFCKTFEE 360
           ++ K TT   +  E+K TKK +        +D    K       K G  K   FCK   +
Sbjct: 40  TAKKATTASVEKTEVKETKKSSDNKKEFNPQDRPFAKYNRGYPNKQGRRKK--FCKLCAK 97

Query: 361 AHERLVYKELDL 396
             E + YK+++L
Sbjct: 98  GQEHVDYKDVEL 109

>U33K_MOUSE (Q922Y1) UBA/UBX 33.3 kDa protein|
          Length = 297

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 24/95 (25%), Positives = 49/95 (51%)
 Frame = +1

Query: 127 EQEFRRMLDLYPVVRSRDYCKDELESSSKGTTQQEQAQEIKGTKKKAAEDLFLRKLKMAA 306
           +++ +RML+L    +     ++E E+  +   ++ Q QE+   ++K  ED    +++ AA
Sbjct: 92  QEQTKRMLELVAQKQREREEREEREALEREKQRRRQGQELSVARQKLQED----EMRRAA 147

Query: 307 EKKVGATKAELFCKTFEEAHERLVYKELDLDAAXR 411
           E++    KAE      E A  + V ++++ D A R
Sbjct: 148 EER-RREKAE------ELAARQRVREKIERDKAER 175

>U33K_HUMAN (Q04323) UBA/UBX 33.3 kDa protein|
          Length = 297

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 23/95 (24%), Positives = 49/95 (51%)
 Frame = +1

Query: 127 EQEFRRMLDLYPVVRSRDYCKDELESSSKGTTQQEQAQEIKGTKKKAAEDLFLRKLKMAA 306
           +++ +RML+L    +     ++E E+  +   ++ Q QE+   +++  ED    +++ AA
Sbjct: 92  QEQTKRMLELVAQKQREREEREEREALERERQRRRQGQELSAARQRLQED----EMRRAA 147

Query: 307 EKKVGATKAELFCKTFEEAHERLVYKELDLDAAXR 411
           E++    KAE      E A  + V ++++ D A R
Sbjct: 148 EER-RREKAE------ELAARQRVREKIERDKAER 175


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,708,113
Number of Sequences: 219361
Number of extensions: 729473
Number of successful extensions: 2566
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2561
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)