ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet61h11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_450593.1| Oryza sativa (japonica cultivar-group), mRNA 167 3e-38
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 167 3e-38
3dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic D... 167 3e-38
4dbj|AK071395.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 3e-38
5gb|BT018115.1| Zea mays clone EL01N0553H03.c mRNA sequence 149 7e-33
6gb|AY107736.1| Zea mays PCO090313 mRNA sequence 149 7e-33
7ref|XM_482242.1| Oryza sativa (japonica cultivar-group), mRNA 90 6e-15
8ref|XM_507223.1| PREDICTED Oryza sativa (japonica cultivar-group... 90 6e-15
9ref|XM_507222.1| PREDICTED Oryza sativa (japonica cultivar-group... 90 6e-15
10dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
11dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic D... 90 6e-15
12dbj|AK109817.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 6e-15
13dbj|AK098973.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 6e-15
14dbj|AK060114.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 6e-15
15ref|NM_125874.2| Arabidopsis thaliana unknown protein AT5G64780 ... 50 0.005
16gb|AY091256.1| Arabidopsis thaliana unknown protein (At5g64780) ... 50 0.005
17gb|AY074385.1| Arabidopsis thaliana unknown protein (At5g64780) ... 50 0.005
18dbj|AB025637.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 50 0.005
19ref|NM_192567.1| Oryza sativa (japonica cultivar-group), predic... 48 0.019
20dbj|AK061874.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.019
21dbj|AB110176.1| Oryza sativa (japonica cultivar-group) mRNA for ... 48 0.019
22dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.019
23dbj|AP003243.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.019
24dbj|AK099494.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.019
25dbj|AK066191.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.019
26gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 44 0.30
27ref|XM_550412.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.2
28dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
29gb|AY085304.1| Arabidopsis thaliana clone 144066 mRNA, complete ... 42 1.2
30dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
31dbj|AP005325.5| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
32ref|XM_523884.1| PREDICTED: Pan troglodytes similar to Transcrip... 40 4.6
33ref|XM_466518.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.6
34ref|NM_189707.1| Oryza sativa (japonica cultivar-group), predic... 40 4.6
35ref|XM_873057.1| PREDICTED: Bos taurus hypothetical protein LOC6... 40 4.6
36gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 4.6
37ref|XM_543327.2| PREDICTED: Canis familiaris similar to kinesin ... 40 4.6
38gb|AE005970.1| Caulobacter crescentus CB15 section 296 of 359 of... 40 4.6
39gb|CP000249.1| Frankia sp. CcI3, complete genome 40 4.6
40gb|AF327876.1|AF327876 Chlamydomonas reinhardtii PF6 protein gen... 40 4.6
41dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
42dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
43gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.6
44gb|AC012508.10| Homo sapiens BAC clone RP11-521O16 from 2, compl... 40 4.6
45dbj|AP004031.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
46dbj|AP004023.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
47dbj|AK060490.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.6
48gb|U84003.1|HSTSBIN5 Homo sapiens bridging integrator protein-1 ... 40 4.6 
>ref|XM_450593.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1102

 Score =  167 bits (84), Expect = 3e-38
 Identities = 108/116 (93%)
 Strand = Plus / Plus

                                                                       
Query: 234 ggggaagaagcggaaggcggaggcggcgcggctggacgagacggaccgggccatgtacgg 293
           |||||||||||||||||||||||||||||||||||| ||||||||| ||||  |||||||
Sbjct: 196 ggggaagaagcggaaggcggaggcggcgcggctggaggagacggacagggcgctgtacgg 255

                                                                   
Query: 294 cgcgttccggggcgccgccaactcgctctcgcagctctacacgctcgccatgggcg 349
            |||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct: 256 ggcgttccggggcgcggccaactcgctgtcccagctctacacgctcgccatgggcg 311
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  167 bits (84), Expect = 3e-38
 Identities = 108/116 (93%)
 Strand = Plus / Plus

                                                                            
Query: 234      ggggaagaagcggaaggcggaggcggcgcggctggacgagacggaccgggccatgtacgg 293
                |||||||||||||||||||||||||||||||||||| ||||||||| ||||  |||||||
Sbjct: 11681805 ggggaagaagcggaaggcggaggcggcgcggctggaggagacggacagggcgctgtacgg 11681864

                                                                        
Query: 294      cgcgttccggggcgccgccaactcgctctcgcagctctacacgctcgccatgggcg 349
                 |||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct: 11681865 ggcgttccggggcgcggccaactcgctgtcccagctctacacgctcgccatgggcg 11681920



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 27       cgtaaagccgccgcttcgtgtcgacgcg 54
                ||||||||||||||||||| || |||||
Sbjct: 11681594 cgtaaagccgccgcttcgtctccacgcg 11681621
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>dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0711F01
          Length = 193091

 Score =  167 bits (84), Expect = 3e-38
 Identities = 108/116 (93%)
 Strand = Plus / Plus

                                                                          
Query: 234    ggggaagaagcggaaggcggaggcggcgcggctggacgagacggaccgggccatgtacgg 293
              |||||||||||||||||||||||||||||||||||| ||||||||| ||||  |||||||
Sbjct: 116439 ggggaagaagcggaaggcggaggcggcgcggctggaggagacggacagggcgctgtacgg 116498

                                                                      
Query: 294    cgcgttccggggcgccgccaactcgctctcgcagctctacacgctcgccatgggcg 349
               |||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct: 116499 ggcgttccggggcgcggccaactcgctgtcccagctctacacgctcgccatgggcg 116554



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 27     cgtaaagccgccgcttcgtgtcgacgcg 54
              ||||||||||||||||||| || |||||
Sbjct: 116228 cgtaaagccgccgcttcgtctccacgcg 116255
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>dbj|AK071395.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023095O09, full
           insert sequence
          Length = 1102

 Score =  167 bits (84), Expect = 3e-38
 Identities = 108/116 (93%)
 Strand = Plus / Plus

                                                                       
Query: 234 ggggaagaagcggaaggcggaggcggcgcggctggacgagacggaccgggccatgtacgg 293
           |||||||||||||||||||||||||||||||||||| ||||||||| ||||  |||||||
Sbjct: 196 ggggaagaagcggaaggcggaggcggcgcggctggaggagacggacagggcgctgtacgg 255

                                                                   
Query: 294 cgcgttccggggcgccgccaactcgctctcgcagctctacacgctcgccatgggcg 349
            |||||||||||||| ||||||||||| || |||||||||||||||||||||||||
Sbjct: 256 ggcgttccggggcgcggccaactcgctgtcccagctctacacgctcgccatgggcg 311
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>gb|BT018115.1| Zea mays clone EL01N0553H03.c mRNA sequence
          Length = 1357

 Score =  149 bits (75), Expect = 7e-33
 Identities = 105/115 (91%)
 Strand = Plus / Plus

                                                                       
Query: 235 gggaagaagcggaaggcggaggcggcgcggctggacgagacggaccgggccatgtacggc 294
           ||||||||||| |||||||||||||| || ||||| ||||||||||||||  | ||||| 
Sbjct: 195 gggaagaagcgcaaggcggaggcggcacgcctggaggagacggaccgggcgctctacggg 254

                                                                  
Query: 295 gcgttccggggcgccgccaactcgctctcgcagctctacacgctcgccatgggcg 349
           || ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 255 gccttccggggcgccgccaactcgctctcgcagctctacacgctcggcatgggcg 309



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 27 cgtaaagccgccgcttcgtg 46
          ||||||||||||||||||||
Sbjct: 60 cgtaaagccgccgcttcgtg 79
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>gb|AY107736.1| Zea mays PCO090313 mRNA sequence
          Length = 1090

 Score =  149 bits (75), Expect = 7e-33
 Identities = 105/115 (91%)
 Strand = Plus / Plus

                                                                       
Query: 235 gggaagaagcggaaggcggaggcggcgcggctggacgagacggaccgggccatgtacggc 294
           ||||||||||| |||||||||||||| || ||||| ||||||||||||||  | ||||| 
Sbjct: 243 gggaagaagcgcaaggcggaggcggcacgcctggaggagacggaccgggcgctctacggg 302

                                                                  
Query: 295 gcgttccggggcgccgccaactcgctctcgcagctctacacgctcgccatgggcg 349
           || ||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 303 gccttccggggcgccgccaactcgctctcgcagctctacacgctcggcatgggcg 357



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  cgtaaagccgccgcttcgtg 46
           ||||||||||||||||||||
Sbjct: 92  cgtaaagccgccgcttcgtg 111
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>ref|XM_482242.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 911

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 98/116 (84%), Gaps = 6/116 (5%)
 Strand = Plus / Plus

                                                                       
Query: 233 cggggaagaagcggaaggcggaggcggcgcggctgg------acgagacggaccgggcca 286
           |||||| |||||||||||||||||||||||||  ||      | ||| | ||||||||  
Sbjct: 79  cggggaggaagcggaaggcggaggcggcgcgggcggcggaggaggaggccgaccgggcgc 138

                                                                   
Query: 287 tgtacggcgcgttccggggcgccgccaactcgctctcgcagctctacacgctcgcc 342
           | |||||||| ||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 139 tctacggcgccttccgcggcgccgccaactcgctctcgcagctctacgcgctcgcc 194
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>ref|XM_507223.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1198_B10.8 mRNA
          Length = 1009

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 98/116 (84%), Gaps = 6/116 (5%)
 Strand = Plus / Plus

                                                                       
Query: 233 cggggaagaagcggaaggcggaggcggcgcggctgg------acgagacggaccgggcca 286
           |||||| |||||||||||||||||||||||||  ||      | ||| | ||||||||  
Sbjct: 100 cggggaggaagcggaaggcggaggcggcgcgggcggcggaggaggaggccgaccgggcgc 159

                                                                   
Query: 287 tgtacggcgcgttccggggcgccgccaactcgctctcgcagctctacacgctcgcc 342
           | |||||||| ||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 160 tctacggcgccttccgcggcgccgccaactcgctctcgcagctctacgcgctcgcc 215
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>ref|XM_507222.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1198_B10.8 mRNA
          Length = 1358

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 98/116 (84%), Gaps = 6/116 (5%)
 Strand = Plus / Plus

                                                                       
Query: 233 cggggaagaagcggaaggcggaggcggcgcggctgg------acgagacggaccgggcca 286
           |||||| |||||||||||||||||||||||||  ||      | ||| | ||||||||  
Sbjct: 185 cggggaggaagcggaaggcggaggcggcgcgggcggcggaggaggaggccgaccgggcgc 244

                                                                   
Query: 287 tgtacggcgcgttccggggcgccgccaactcgctctcgcagctctacacgctcgcc 342
           | |||||||| ||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 245 tctacggcgccttccgcggcgccgccaactcgctctcgcagctctacgcgctcgcc 300
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 98/116 (84%), Gaps = 6/116 (5%)
 Strand = Plus / Plus

                                                                            
Query: 233      cggggaagaagcggaaggcggaggcggcgcggctgg------acgagacggaccgggcca 286
                |||||| |||||||||||||||||||||||||  ||      | ||| | ||||||||  
Sbjct: 18949746 cggggaggaagcggaaggcggaggcggcgcgggcggcggaggaggaggccgaccgggcgc 18949805

                                                                        
Query: 287      tgtacggcgcgttccggggcgccgccaactcgctctcgcagctctacacgctcgcc 342
                | |||||||| ||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 18949806 tctacggcgccttccgcggcgccgccaactcgctctcgcagctctacgcgctcgcc 18949861
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>dbj|AP003947.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1198_B10
          Length = 119768

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 98/116 (84%), Gaps = 6/116 (5%)
 Strand = Plus / Plus

                                                                         
Query: 233   cggggaagaagcggaaggcggaggcggcgcggctgg------acgagacggaccgggcca 286
             |||||| |||||||||||||||||||||||||  ||      | ||| | ||||||||  
Sbjct: 34666 cggggaggaagcggaaggcggaggcggcgcgggcggcggaggaggaggccgaccgggcgc 34725

                                                                     
Query: 287   tgtacggcgcgttccggggcgccgccaactcgctctcgcagctctacacgctcgcc 342
             | |||||||| ||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 34726 tctacggcgccttccgcggcgccgccaactcgctctcgcagctctacgcgctcgcc 34781
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>dbj|AK109817.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-148-A02, full
           insert sequence
          Length = 1358

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 98/116 (84%), Gaps = 6/116 (5%)
 Strand = Plus / Plus

                                                                       
Query: 233 cggggaagaagcggaaggcggaggcggcgcggctgg------acgagacggaccgggcca 286
           |||||| |||||||||||||||||||||||||  ||      | ||| | ||||||||  
Sbjct: 185 cggggaggaagcggaaggcggaggcggcgcgggcggcggaggaggaggccgaccgggcgc 244

                                                                   
Query: 287 tgtacggcgcgttccggggcgccgccaactcgctctcgcagctctacacgctcgcc 342
           | |||||||| ||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 245 tctacggcgccttccgcggcgccgccaactcgctctcgcagctctacgcgctcgcc 300
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>dbj|AK098973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089E18, full
           insert sequence
          Length = 913

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 98/116 (84%), Gaps = 6/116 (5%)
 Strand = Plus / Plus

                                                                       
Query: 233 cggggaagaagcggaaggcggaggcggcgcggctgg------acgagacggaccgggcca 286
           |||||| |||||||||||||||||||||||||  ||      | ||| | ||||||||  
Sbjct: 79  cggggaggaagcggaaggcggaggcggcgcgggcggcggaggaggaggccgaccgggcgc 138

                                                                   
Query: 287 tgtacggcgcgttccggggcgccgccaactcgctctcgcagctctacacgctcgcc 342
           | |||||||| ||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 139 tctacggcgccttccgcggcgccgccaactcgctctcgcagctctacgcgctcgcc 194
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>dbj|AK060114.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-D12, full
           insert sequence
          Length = 1009

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 98/116 (84%), Gaps = 6/116 (5%)
 Strand = Plus / Plus

                                                                       
Query: 233 cggggaagaagcggaaggcggaggcggcgcggctgg------acgagacggaccgggcca 286
           |||||| |||||||||||||||||||||||||  ||      | ||| | ||||||||  
Sbjct: 100 cggggaggaagcggaaggcggaggcggcgcgggcggcggaggaggaggccgaccgggcgc 159

                                                                   
Query: 287 tgtacggcgcgttccggggcgccgccaactcgctctcgcagctctacacgctcgcc 342
           | |||||||| ||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 160 tctacggcgccttccgcggcgccgccaactcgctctcgcagctctacgcgctcgcc 215
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>ref|NM_125874.2| Arabidopsis thaliana unknown protein AT5G64780 mRNA, complete cds
          Length = 839

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 284 ccatgtacggcgcgttccggggcgccgccaactcgctctcgcagctcta 332
           ||||||| |||||||| || ||||| || || |||||||||||||||||
Sbjct: 223 ccatgtatggcgcgtttcgaggcgctgctaattcgctctcgcagctcta 271
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>gb|AY091256.1| Arabidopsis thaliana unknown protein (At5g64780) mRNA, complete cds
          Length = 559

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 284 ccatgtacggcgcgttccggggcgccgccaactcgctctcgcagctcta 332
           ||||||| |||||||| || ||||| || || |||||||||||||||||
Sbjct: 53  ccatgtatggcgcgtttcgaggcgctgctaattcgctctcgcagctcta 101
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>gb|AY074385.1| Arabidopsis thaliana unknown protein (At5g64780) mRNA, complete cds
          Length = 886

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 43/49 (87%)
 Strand = Plus / Plus

                                                            
Query: 284 ccatgtacggcgcgttccggggcgccgccaactcgctctcgcagctcta 332
           ||||||| |||||||| || ||||| || || |||||||||||||||||
Sbjct: 223 ccatgtatggcgcgtttcgaggcgctgctaattcgctctcgcagctcta 271
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>dbj|AB025637.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MVP7
          Length = 39645

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                              
Query: 284   ccatgtacggcgcgttccggggcgccgccaactcgctctcgcagctcta 332
             ||||||| |||||||| || ||||| || || |||||||||||||||||
Sbjct: 38883 ccatgtatggcgcgtttcgaggcgctgctaattcgctctcgcagctcta 38835
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>ref|NM_192567.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 603

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 304 ggcgccgccaactcgctctcgcagctctacac 335
           |||||||||||||| ||||| |||||||||||
Sbjct: 76  ggcgccgccaactccctctcccagctctacac 107
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>dbj|AK061874.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-A07, full
           insert sequence
          Length = 977

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 304 ggcgccgccaactcgctctcgcagctctacac 335
           |||||||||||||| ||||| |||||||||||
Sbjct: 175 ggcgccgccaactccctctcccagctctacac 206
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>dbj|AB110176.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical
           protein, complete cds, clone: 13YPG014
          Length = 1095

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 304 ggcgccgccaactcgctctcgcagctctacac 335
           |||||||||||||| ||||| |||||||||||
Sbjct: 210 ggcgccgccaactccctctcccagctctacac 241
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                                
Query: 304      ggcgccgccaactcgctctcgcagctctacac 335
                |||||||||||||| ||||| |||||||||||
Sbjct: 22994226 ggcgccgccaactccctctcccagctctacac 22994195



 Score = 42.1 bits (21), Expect = 1.2
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 295     gcgttccggggcgccgccaactcgctctcgcag 327
               |||||| |||||||||||||| |||| ||||||
Sbjct: 4325748 gcgttcaggggcgccgccaacgcgctgtcgcag 4325780



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 61       tcgcgacctccatcctccatcctc 84
                ||||| ||||||||||||||||||
Sbjct: 41338018 tcgcggcctccatcctccatcctc 41337995
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>dbj|AP003243.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0415C01
          Length = 138701

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                             
Query: 304   ggcgccgccaactcgctctcgcagctctacac 335
             |||||||||||||| ||||| |||||||||||
Sbjct: 64632 ggcgccgccaactccctctcccagctctacac 64601
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>dbj|AK099494.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013027F04, full
           insert sequence
          Length = 1095

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 304 ggcgccgccaactcgctctcgcagctctacac 335
           |||||||||||||| ||||| |||||||||||
Sbjct: 228 ggcgccgccaactccctctcccagctctacac 259
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>dbj|AK066191.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051C07, full
           insert sequence
          Length = 2598

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 304 ggcgccgccaactcgctctcgcagctctacac 335
           |||||||||||||| ||||| |||||||||||
Sbjct: 195 ggcgccgccaactccctctcccagctctacac 226
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 53      cgcccccctcgcgacctccatc 74
               ||||||||||||||||||||||
Sbjct: 1785476 cgcccccctcgcgacctccatc 1785455
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>ref|XM_550412.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 372

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 295 gcgttccggggcgccgccaactcgctctcgcag 327
           |||||| |||||||||||||| |||| ||||||
Sbjct: 73  gcgttcaggggcgccgccaacgcgctgtcgcag 105
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 249      ggcggaggcggcgcggctgga 269
                |||||||||||||||||||||
Sbjct: 12785904 ggcggaggcggcgcggctgga 12785884
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>gb|AY085304.1| Arabidopsis thaliana clone 144066 mRNA, complete sequence
          Length = 779

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                            
Query: 284 ccatgtacggcgcgttccggggcgccgccaactcgctctcgcagctcta 332
           ||||||| | |||||| || ||||| || || |||||||||||||||||
Sbjct: 162 ccatgtatgacgcgtttcgaggcgctgctaattcgctctcgcagctcta 210
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>dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0666G04
          Length = 141983

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 295    gcgttccggggcgccgccaactcgctctcgcag 327
              |||||| |||||||||||||| |||| ||||||
Sbjct: 105518 gcgttcaggggcgccgccaacgcgctgtcgcag 105550
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>dbj|AP005325.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0710F09
          Length = 198867

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 249   ggcggaggcggcgcggctgga 269
             |||||||||||||||||||||
Sbjct: 44028 ggcggaggcggcgcggctgga 44008
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>ref|XM_523884.1| PREDICTED: Pan troglodytes similar to Transcription factor GATA-6
           (GATA binding factor-6) (LOC468495), mRNA
          Length = 2157

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 249 ggcggaggcggcgcggctgg 268
           ||||||||||||||||||||
Sbjct: 667 ggcggaggcggcgcggctgg 686
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>ref|XM_466518.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1739

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 206 ggggtcggaggcgcggggga 225
           ||||||||||||||||||||
Sbjct: 109 ggggtcggaggcgcggggga 128
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>ref|NM_189707.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 708

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 61  tcgcgacctccatcctccatcctc 84
           ||||| ||||||||||||||||||
Sbjct: 611 tcgcggcctccatcctccatcctc 588
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>ref|XM_873057.1| PREDICTED: Bos taurus hypothetical protein LOC613525 (LOC613525),
           mRNA
          Length = 995

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 235 gggaagaagcggaaggcggaggcggcgc 262
           |||| |||||||||||| ||||||||||
Sbjct: 428 gggaggaagcggaaggccgaggcggcgc 455
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 253      gaggcggcgcggctggacga 272
                ||||||||||||||||||||
Sbjct: 12096702 gaggcggcgcggctggacga 12096721
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>ref|XM_543327.2| PREDICTED: Canis familiaris similar to kinesin family member 1B
            (LOC486202), mRNA
          Length = 5076

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 251  cggaggcggcgcggctggac 270
            ||||||||||||||||||||
Sbjct: 2392 cggaggcggcgcggctggac 2373
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>gb|AE005970.1| Caulobacter crescentus CB15 section 296 of 359 of the complete genome
          Length = 12680

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 249   ggcggaggcggcgcggctgg 268
             ||||||||||||||||||||
Sbjct: 12126 ggcggaggcggcgcggctgg 12107
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 258     ggcgcggctggacgagacgg 277
               ||||||||||||||||||||
Sbjct: 3057143 ggcgcggctggacgagacgg 3057124
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>gb|AF327876.1|AF327876 Chlamydomonas reinhardtii PF6 protein gene, promoter and complete cds
          Length = 11462

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 249  ggcggaggcggcgcggctgg 268
            ||||||||||||||||||||
Sbjct: 6209 ggcggaggcggcgcggctgg 6228
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 253      gaggcggcgcggctggacga 272
                ||||||||||||||||||||
Sbjct: 12093465 gaggcggcgcggctggacga 12093484
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 206      ggggtcggaggcgcggggga 225
                ||||||||||||||||||||
Sbjct: 23091811 ggggtcggaggcgcggggga 23091792
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>gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0052J20,
              complete sequence
          Length = 144969

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 253    gaggcggcgcggctggacga 272
              ||||||||||||||||||||
Sbjct: 117282 gaggcggcgcggctggacga 117301
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>gb|AC012508.10| Homo sapiens BAC clone RP11-521O16 from 2, complete sequence
          Length = 185967

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 245   ggaaggcggaggcggcgcgg 264
             ||||||||||||||||||||
Sbjct: 84978 ggaaggcggaggcggcgcgg 84959
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>dbj|AP004031.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0432C03
          Length = 164394

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 61    tcgcgacctccatcctccatcctc 84
             ||||| ||||||||||||||||||
Sbjct: 29511 tcgcggcctccatcctccatcctc 29488
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>dbj|AP004023.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1126_D09
          Length = 138615

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   ggggtcggaggcgcggggga 225
             ||||||||||||||||||||
Sbjct: 58849 ggggtcggaggcgcggggga 58830
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>dbj|AK060490.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-H10, full
           insert sequence
          Length = 1738

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 206 ggggtcggaggcgcggggga 225
           ||||||||||||||||||||
Sbjct: 109 ggggtcggaggcgcggggga 128
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>gb|U84003.1|HSTSBIN5 Homo sapiens bridging integrator protein-1 (BIN1) gene, exons 7-12
          Length = 8310

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 245  ggaaggcggaggcggcgcgg 264
            ||||||||||||||||||||
Sbjct: 4258 ggaaggcggaggcggcgcgg 4277


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,099,073
Number of Sequences: 3902068
Number of extensions: 2099073
Number of successful extensions: 48837
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48162
Number of HSP's gapped (non-prelim): 675
length of query: 349
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 327
effective length of database: 17,147,199,772
effective search space: 5607134325444
effective search space used: 5607134325444
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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