>ref|NM_192692.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 999

 Score =  172 bits (87), Expect = 4e-40
 Identities = 167/193 (86%), Gaps = 3/193 (1%)
 Strand = Plus / Plus

                                                                       
Query: 119 cctccgcgcgccacatcgtcaccttcacccctagtcgcggcgtctccccctcctccctag 178
           |||||||||||||| || |||||||||||||    ||||||||||||||| ||||||| |
Sbjct: 65  cctccgcgcgccacgtcatcaccttcaccccagcccgcggcgtctcccccgcctccctcg 124

                                                                       
Query: 179 cctgggaccccaccgctcagcacttcgtcgtcgccggcggaggcgacgccgtcctatccg 238
           ||||||||||||| || ||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct: 125 cctgggaccccacggcgcagcacttcgtcgtcgccggcggcggcgaggccgtcctctccg 184

                                                                       
Query: 239 tatctgacgccggcgtcaccgaatctatcgcgtc---ccccggtgcctcggcagtcgccg 295
           | || |||||||| |||||||| || ||||||||   || ||| ||||| || |||||||
Sbjct: 185 tctccgacgccggggtcaccgagtcgatcgcgtcccaccgcggcgcctccgccgtcgccg 244

                        
Query: 296 ttgacgaccgccg 308
           | |||||||||||
Sbjct: 245 tcgacgaccgccg 257

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  172 bits (87), Expect = 4e-40
 Identities = 167/193 (86%), Gaps = 3/193 (1%)
 Strand = Plus / Minus

                                                                            
Query: 119      cctccgcgcgccacatcgtcaccttcacccctagtcgcggcgtctccccctcctccctag 178
                |||||||||||||| || |||||||||||||    ||||||||||||||| ||||||| |
Sbjct: 23884234 cctccgcgcgccacgtcatcaccttcaccccagcccgcggcgtctcccccgcctccctcg 23884175

                                                                            
Query: 179      cctgggaccccaccgctcagcacttcgtcgtcgccggcggaggcgacgccgtcctatccg 238
                ||||||||||||| || ||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct: 23884174 cctgggaccccacggcgcagcacttcgtcgtcgccggcggcggcgaggccgtcctctccg 23884115

                                                                            
Query: 239      tatctgacgccggcgtcaccgaatctatcgcgtc---ccccggtgcctcggcagtcgccg 295
                | || |||||||| |||||||| || ||||||||   || ||| ||||| || |||||||
Sbjct: 23884114 tctccgacgccggggtcaccgagtcgatcgcgtcccaccgcggcgcctccgccgtcgccg 23884055

                             
Query: 296      ttgacgaccgccg 308
                | |||||||||||
Sbjct: 23884054 tcgacgaccgccg 23884042

>dbj|AP003303.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0704D04
          Length = 147638

 Score =  172 bits (87), Expect = 4e-40
 Identities = 167/193 (86%), Gaps = 3/193 (1%)
 Strand = Plus / Minus

                                                                         
Query: 119   cctccgcgcgccacatcgtcaccttcacccctagtcgcggcgtctccccctcctccctag 178
             |||||||||||||| || |||||||||||||    ||||||||||||||| ||||||| |
Sbjct: 30638 cctccgcgcgccacgtcatcaccttcaccccagcccgcggcgtctcccccgcctccctcg 30579

                                                                         
Query: 179   cctgggaccccaccgctcagcacttcgtcgtcgccggcggaggcgacgccgtcctatccg 238
             ||||||||||||| || ||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct: 30578 cctgggaccccacggcgcagcacttcgtcgtcgccggcggcggcgaggccgtcctctccg 30519

                                                                         
Query: 239   tatctgacgccggcgtcaccgaatctatcgcgtc---ccccggtgcctcggcagtcgccg 295
             | || |||||||| |||||||| || ||||||||   || ||| ||||| || |||||||
Sbjct: 30518 tctccgacgccggggtcaccgagtcgatcgcgtcccaccgcggcgcctccgccgtcgccg 30459

                          
Query: 296   ttgacgaccgccg 308
             | |||||||||||
Sbjct: 30458 tcgacgaccgccg 30446

>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 46.1 bits (23), Expect = 0.066
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 204     cgtcgtcgccggcggaggcgacg 226
               |||||||||||||||||||||||
Sbjct: 2719126 cgtcgtcgccggcggaggcgacg 2719148

>gb|AC135460.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBb0091I11, complete sequence
          Length = 135993

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 203  tcgtcgtcgccggcggaggcgacgcc 228
            |||||||||||||||||| |||||||
Sbjct: 6265 tcgtcgtcgccggcggagacgacgcc 6240

>gb|AC119671.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0084F23, complete sequence
          Length = 89829

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 203   tcgtcgtcgccggcggaggcgacgcc 228
             |||||||||||||||||| |||||||
Sbjct: 10920 tcgtcgtcgccggcggagacgacgcc 10945

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 203     tcgtcgtcgccggcggaggcgacgcc 228
               |||||||||||||||||| |||||||
Sbjct: 7547180 tcgtcgtcgccggcggagacgacgcc 7547155



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 208      gtcgccggcggaggcgacgccgtcc 232
                ||||||||||| |||||||||||||
Sbjct: 21435978 gtcgccggcggcggcgacgccgtcc 21436002



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 210      cgccggcggaggcgacgccg 229
                ||||||||||||||||||||
Sbjct: 17495033 cgccggcggaggcgacgccg 17495052

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 203     tcgtcgtcgccggcggaggcgacgcc 228
               |||||||||||||||||| |||||||
Sbjct: 7617266 tcgtcgtcgccggcggagacgacgcc 7617241



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 208      gtcgccggcggaggcgacgccgtcc 232
                ||||||||||| |||||||||||||
Sbjct: 21746177 gtcgccggcggcggcgacgccgtcc 21746201



 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 210      cgccggcggaggcgacgccg 229
                ||||||||||||||||||||
Sbjct: 17588743 cgccggcggaggcgacgccg 17588762

>gb|AC136148.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0029K08, complete sequence
          Length = 136687

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 208   gtcgccggcggaggcgacgccgtcc 232
             ||||||||||| |||||||||||||
Sbjct: 93728 gtcgccggcggcggcgacgccgtcc 93752

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 203     tcgtcgtcgccggcggaggcgacgccgtc 231
               ||||| |||||||||||||||||| ||||
Sbjct: 4063339 tcgtcatcgccggcggaggcgacgacgtc 4063367

>gb|AC137759.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBb0008H02, complete sequence
          Length = 143438

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 210  cgccggcggaggcgacgccg 229
            ||||||||||||||||||||
Sbjct: 2730 cgccggcggaggcgacgccg 2749

>gb|AC136377.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0028G07, complete sequence
          Length = 157463

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 210   cgccggcggaggcgacgccg 229
             ||||||||||||||||||||
Sbjct: 89047 cgccggcggaggcgacgccg 89066

>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 231    cctatccgtatctgacgccg 250
              ||||||||||||||||||||
Sbjct: 713663 cctatccgtatctgacgccg 713682

>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 207     cgtcgccggcggaggcgacg 226
               ||||||||||||||||||||
Sbjct: 2242386 cgtcgccggcggaggcgacg 2242367

>gb|AY659012.1| Synthetic construct Peudomonas aeruginosa clone FLH035746.01F
           PA2956 gene, partial cds
          Length = 897

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 196 cagcacttcgtcgtcgccgg 215
           ||||||||||||||||||||
Sbjct: 438 cagcacttcgtcgtcgccgg 419

>gb|AC127341.3| Mus musculus BAC clone RP23-189L19 from chromosome 17, complete sequence
          Length = 213609

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 156    cggcgtctccccctcctccc 175
              ||||||||||||||||||||
Sbjct: 140561 cggcgtctccccctcctccc 140542

>emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome; segment 3/13
          Length = 349564

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   cctatccgtatctgacgccg 250
             ||||||||||||||||||||
Sbjct: 27944 cctatccgtatctgacgccg 27963

>emb|BX248336.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             3/14
          Length = 320050

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 231   cctatccgtatctgacgccg 250
             ||||||||||||||||||||
Sbjct: 46463 cctatccgtatctgacgccg 46482

>emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21,
             complete sequence
          Length = 138969

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 203   tcgtcgtcgccggcggaggcgacg 226
             ||||||||| ||||||||||||||
Sbjct: 14778 tcgtcgtcggcggcggaggcgacg 14801

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 203      tcgtcgtcgccggcggaggcgacg 226
                ||||||||| ||||||||||||||
Sbjct: 22806003 tcgtcgtcggcggcggaggcgacg 22806026

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 200      acttcgtcgtcgccggcgga 219
                ||||||||||||||||||||
Sbjct: 10646862 acttcgtcgtcgccggcgga 10646843

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 211      gccggcggaggcgacgccgt 230
                ||||||||||||||||||||
Sbjct: 15560594 gccggcggaggcgacgccgt 15560575

>gb|AE004721.1| Pseudomonas aeruginosa PAO1, section 282 of 529 of the complete genome
          Length = 12386

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   cagcacttcgtcgtcgccgg 215
             ||||||||||||||||||||
Sbjct: 11845 cagcacttcgtcgtcgccgg 11864

>dbj|AP005189.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0474B11
          Length = 141702

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   acttcgtcgtcgccggcgga 219
             ||||||||||||||||||||
Sbjct: 89526 acttcgtcgtcgccggcgga 89507

>gb|AC144739.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0049D13, complete sequence
          Length = 136942

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   gccggcggaggcgacgccgt 230
             ||||||||||||||||||||
Sbjct: 90084 gccggcggaggcgacgccgt 90065


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,788,486
Number of Sequences: 3902068
Number of extensions: 1788486
Number of successful extensions: 46764
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 46095
Number of HSP's gapped (non-prelim): 663
length of query: 308
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 286
effective length of database: 17,147,199,772
effective search space: 4904099134792
effective search space used: 4904099134792
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)