>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                        
Query: 109      ccacgatgacggcgtcgccgttcccgacggtggagaagtg 148
                |||||||||  ||||||||||||||| |||||||||||||
Sbjct: 29861385 ccacgatgatcgcgtcgccgttcccggcggtggagaagtg 29861346



 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 23       ggagacggagacagaccaag 42
                ||||||||||||||||||||
Sbjct: 29169557 ggagacggagacagaccaag 29169538



 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 134      gacggtggagaagtgcgcgtcgg 156
                ||||| |||||||||||||||||
Sbjct: 27753092 gacggaggagaagtgcgcgtcgg 27753070



 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 86       agcgatggcgggcgcgggc 104
                |||||||||||||||||||
Sbjct: 23229179 agcgatggcgggcgcgggc 23229197

>gb|AY387483.1| Oryza sativa (japonica cultivar-group) BAC OSJNBa0084L17, complete
              sequence
          Length = 159661

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                      
Query: 109    ccacgatgacggcgtcgccgttcccgacggtggagaagtg 148
              |||||||||  ||||||||||||||| |||||||||||||
Sbjct: 149220 ccacgatgatcgcgtcgccgttcccggcggtggagaagtg 149259

>gb|AC118133.4| Oryza sativa chromosome 3 BAC OSJNBb0016H12 genomic sequence, complete
             sequence
          Length = 139946

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                     
Query: 109   ccacgatgacggcgtcgccgttcccgacggtggagaagtg 148
             |||||||||  ||||||||||||||| |||||||||||||
Sbjct: 27326 ccacgatgatcgcgtcgccgttcccggcggtggagaagtg 27287

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 56.0 bits (28), Expect = 4e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                        
Query: 109      ccacgatgacggcgtcgccgttcccgacggtggagaagtg 148
                |||||||||  ||||||||||||||| |||||||||||||
Sbjct: 29952807 ccacgatgatcgcgtcgccgttcccggcggtggagaagtg 29952768



 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 23       ggagacggagacagaccaag 42
                ||||||||||||||||||||
Sbjct: 29260979 ggagacggagacagaccaag 29260960



 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 134      gacggtggagaagtgcgcgtcgg 156
                ||||| |||||||||||||||||
Sbjct: 27844415 gacggaggagaagtgcgcgtcgg 27844393



 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 86       agcgatggcgggcgcgggc 104
                |||||||||||||||||||
Sbjct: 23222207 agcgatggcgggcgcgggc 23222225

>gb|AY664417.1| Zea mays cultivar Mo17 locus 9002, complete sequence
          Length = 366120

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 125   gccgttcccgacggtggagaagtgcg 150
             |||||||||||||||||| |||||||
Sbjct: 33155 gccgttcccgacggtggacaagtgcg 33130

>gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence
          Length = 317137

 Score = 44.1 bits (22), Expect = 0.16
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 125   gccgttcccgacggtggagaagtgcg 150
             |||||||||||||||||| |||||||
Sbjct: 35758 gccgttcccgacggtggacaagtgcg 35733

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 0.61
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 87      gcgatggcgggcgcgggcgcg 107
               |||||||||||||||||||||
Sbjct: 3705367 gcgatggcgggcgcgggcgcg 3705347



 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 79      ggttgggagcgatggcgggcgcgg 102
               |||| |||||||||||||||||||
Sbjct: 2468221 ggttcggagcgatggcgggcgcgg 2468244



 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 90     atggcgggcgcgggcgcgaccac 112
              ||||||| |||||||||||||||
Sbjct: 745899 atggcggccgcgggcgcgaccac 745921

>gb|AF167066.1| Crematogaster smithi microsatellites C20-1 and C20-2 sequence
          Length = 244

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 103 gcgcgaccacgatgacggcg 122
           ||||||||||||||||||||
Sbjct: 41  gcgcgaccacgatgacggcg 22

>gb|AC135228.5| Oryza sativa chromosome 3 BAC OSJNBb0122C16 genomic sequence,
            complete sequence
          Length = 129440

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 23   ggagacggagacagaccaag 42
            ||||||||||||||||||||
Sbjct: 1418 ggagacggagacagaccaag 1399

>gb|AC137997.2| Oryza sativa chromosome 3 BAC OJ1499_D04 genomic sequence, complete
            sequence
          Length = 91084

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 23   ggagacggagacagaccaag 42
            ||||||||||||||||||||
Sbjct: 1819 ggagacggagacagaccaag 1838

>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 96     ggcgcgggcgcgaccacgat 115
              ||||||||||||||||||||
Sbjct: 901929 ggcgcgggcgcgaccacgat 901910

>gb|AY110105.1| Zea mays CL22851_1 mRNA sequence
          Length = 845

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 105 gcgaccacgatgacggcgtcgccg 128
           |||| |||||||||||||||||||
Sbjct: 300 gcgagcacgatgacggcgtcgccg 277

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 2.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 82      tgggagcgatggcgggcgcgggcg 105
               |||||||| |||||||||||||||
Sbjct: 1820511 tgggagcggtggcgggcgcgggcg 1820534

>ref|XM_469399.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 564

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 134 gacggtggagaagtgcgcgtcgg 156
           ||||| |||||||||||||||||
Sbjct: 372 gacggaggagaagtgcgcgtcgg 394

>gb|AC107206.4| Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete
             sequence
          Length = 154558

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 86    agcgatggcgggcgcgggc 104
             |||||||||||||||||||
Sbjct: 65660 agcgatggcgggcgcgggc 65678

>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 143     gaagtgcgcgtcggtgggccgga 165
               ||||||||||||| |||||||||
Sbjct: 2688387 gaagtgcgcgtcgctgggccgga 2688409

>gb|AC154647.2| Mus musculus BAC clone RP23-283P8 from chromosome 17, complete sequence
          Length = 208252

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 13    gcacttgggaggagacgga 31
             |||||||||||||||||||
Sbjct: 91748 gcacttgggaggagacgga 91766

>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence
          Length = 2580084

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 103     gcgcgaccacgatgacggc 121
               |||||||||||||||||||
Sbjct: 2038967 gcgcgaccacgatgacggc 2038985

>gb|AY337513.1| Myxococcus xanthus isolate nla26 mutant NtrC-like activator gene,
            partial cds
          Length = 1494

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 87   gcgatggcgggcgcgggcg 105
            |||||||||||||||||||
Sbjct: 1271 gcgatggcgggcgcgggcg 1253

>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 91      tggcgggcgcgggcgcgac 109
               |||||||||||||||||||
Sbjct: 2488218 tggcgggcgcgggcgcgac 2488200

>emb|AL445065.1|TACID3 Thermoplasma acidophilum complete genome; segment 3/5
          Length = 316900

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 150    gcgtcggtgggccggagcg 168
              |||||||||||||||||||
Sbjct: 217229 gcgtcggtgggccggagcg 217247

>gb|AC171744.3| Nomascus leucogenys leucogenys clone CH271-119I21, complete sequence
          Length = 130987

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 85   gagcgatggcgggcgcgggcgcg 107
            |||||| ||||||||||||||||
Sbjct: 8297 gagcgagggcgggcgcgggcgcg 8319

>gb|AC166002.3| Nomascus leucogenys leucogenys clone CH271-400K18, complete sequence
          Length = 195728

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 85     gagcgatggcgggcgcgggcgcg 107
              |||||| ||||||||||||||||
Sbjct: 190023 gagcgagggcgggcgcgggcgcg 190045

>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 112     cgatgacggcgtcgccgtt 130
               |||||||||||||||||||
Sbjct: 1662243 cgatgacggcgtcgccgtt 1662225

>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 105     gcgaccacgatgacggcgt 123
               |||||||||||||||||||
Sbjct: 2137803 gcgaccacgatgacggcgt 2137785

>gb|AF448145.2| Myxococcus xanthus che3 chemosensory regulator gene cluster, complete
            sequence
          Length = 17906

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 87   gcgatggcgggcgcgggcg 105
            |||||||||||||||||||
Sbjct: 3442 gcgatggcgggcgcgggcg 3460

>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete
             sequence
          Length = 119329

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 134   gacggtggagaagtgcgcgtcgg 156
             ||||| |||||||||||||||||
Sbjct: 60802 gacggaggagaagtgcgcgtcgg 60824

>emb|CT032672.1| Platynereis dumerilii EST IB0AAA33CD07EM1
          Length = 659

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 174 acggtggtggccgacctgg 192
           |||||||||||||||||||
Sbjct: 505 acggtggtggccgacctgg 523

>emb|CT032671.1| Platynereis dumerilii EST IB0AAA33CD07FM1
          Length = 659

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 174 acggtggtggccgacctgg 192
           |||||||||||||||||||
Sbjct: 155 acggtggtggccgacctgg 137

>emb|CT032600.1| Platynereis dumerilii EST IB0AAA35CB01EM1
          Length = 672

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 174 acggtggtggccgacctgg 192
           |||||||||||||||||||
Sbjct: 518 acggtggtggccgacctgg 536

>emb|CT032599.1| Platynereis dumerilii EST IB0AAA35CB01FM1
          Length = 672

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 174 acggtggtggccgacctgg 192
           |||||||||||||||||||
Sbjct: 155 acggtggtggccgacctgg 137

>emb|CT032431.1| Platynereis dumerilii EST IB0AAA38BE09EM1
          Length = 659

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 174 acggtggtggccgacctgg 192
           |||||||||||||||||||
Sbjct: 505 acggtggtggccgacctgg 523

>emb|CT032430.1| Platynereis dumerilii EST IB0AAA38BE09FM1
          Length = 659

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 174 acggtggtggccgacctgg 192
           |||||||||||||||||||
Sbjct: 155 acggtggtggccgacctgg 137

>emb|CT032344.1| Platynereis dumerilii EST IB0AAA40AA09EM1
          Length = 667

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 174 acggtggtggccgacctgg 192
           |||||||||||||||||||
Sbjct: 512 acggtggtggccgacctgg 530

>emb|CT032343.1| Platynereis dumerilii EST IB0AAA40AA09FM1
          Length = 667

 Score = 38.2 bits (19), Expect = 9.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 174 acggtggtggccgacctgg 192
           |||||||||||||||||||
Sbjct: 156 acggtggtggccgacctgg 138


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,130,551
Number of Sequences: 3902068
Number of extensions: 1130551
Number of successful extensions: 88540
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86940
Number of HSP's gapped (non-prelim): 1600
length of query: 193
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 171
effective length of database: 17,147,199,772
effective search space: 2932171161012
effective search space used: 2932171161012
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)