ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet61a06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY104353.1| Zea mays PCO096623 mRNA sequence 82 1e-12
2gb|AY104463.1| Zea mays PCO073346 mRNA sequence 52 0.001
3ref|NM_185004.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.017
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 48 0.017
5gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 geno... 48 0.017
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.017
7dbj|AK103025.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.017
8dbj|AK103023.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.017
9ref|XM_501233.1| Yarrowia lipolytica CLIB122, YALI0B22704g predi... 42 1.1
10emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB1... 42 1.1
11dbj|AK182826.1| Mus musculus cDNA, clone:Y0G0123N14, strand:unsp... 40 4.2
12emb|AL772351.12| Mouse DNA sequence from clone RP24-199N10 on ch... 40 4.2
13emb|AL354822.8| Human DNA sequence from clone RP11-474C22 on chr... 40 4.2 
>gb|AY104353.1| Zea mays PCO096623 mRNA sequence
          Length = 1276

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                       
Query: 148 gatgtcggaacattctgagagcacagctgagaagctcatgggcaacatcatggataccat 207
           ||||||||||| |||||||||  || |||| ||| | ||| ||| |||||||||||||||
Sbjct: 173 gatgtcggaacgttctgagagtgcaactgaaaagattatgagcagcatcatggataccat 232

                                        
Query: 208 cgctgacaagctccctaagcagaagtctg 236
            |||||||| || ||||||||||||||||
Sbjct: 233 tgctgacaaccttcctaagcagaagtctg 261



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 47/53 (88%), Gaps = 1/53 (1%)
 Strand = Plus / Plus

                                                                
Query: 245 atgagcaacatcatggataccatcgctgacaagc-tccccagcagaagtctgg 296
           ||||||| ||||||||||||||| |||||||| | |||  |||||||||||||
Sbjct: 210 atgagcagcatcatggataccattgctgacaaccttcctaagcagaagtctgg 262
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>gb|AY104463.1| Zea mays PCO073346 mRNA sequence
          Length = 797

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                             
Query: 185 atgggcaacatcatggataccatcgctgacaagctccctaagcagaagtc 234
           ||||||||||||||||| |||||||| || || ||||| | |||||||||
Sbjct: 221 atgggcaacatcatggagaccatcgcggagaacctcccgaggcagaagtc 270
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>ref|NM_185004.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 995

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 193 catcatggataccatcgctgacaagctccctaagcagaagtctg 236
           ||||||||||||||| ||||| || || ||||||||||| ||||
Sbjct: 45  catcatggataccattgctgagaaccttcctaagcagaaatctg 88



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 245 atgagcaacatcatggataccatcgctga 273
           ||||||| ||||||||||||||| |||||
Sbjct: 37  atgagcagcatcatggataccattgctga 65
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                            
Query: 193      catcatggataccatcgctgacaagctccctaagcagaagtctg 236
                ||||||||||||||| ||||| || || ||||||||||| ||||
Sbjct: 32099481 catcatggataccattgctgagaaccttcctaagcagaaatctg 32099438



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 245      atgagcaacatcatggataccatcgctga 273
                ||||||| ||||||||||||||| |||||
Sbjct: 32099489 atgagcagcatcatggataccattgctga 32099461
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>gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 genomic sequence, complete
              sequence
          Length = 178158

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                          
Query: 193    catcatggataccatcgctgacaagctccctaagcagaagtctg 236
              ||||||||||||||| ||||| || || ||||||||||| ||||
Sbjct: 100606 catcatggataccattgctgagaaccttcctaagcagaaatctg 100563



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 245    atgagcaacatcatggataccatcgctga 273
              ||||||| ||||||||||||||| |||||
Sbjct: 100614 atgagcagcatcatggataccattgctga 100586
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 39/44 (88%)
 Strand = Plus / Minus

                                                            
Query: 193      catcatggataccatcgctgacaagctccctaagcagaagtctg 236
                ||||||||||||||| ||||| || || ||||||||||| ||||
Sbjct: 32189993 catcatggataccattgctgagaaccttcctaagcagaaatctg 32189950



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 245      atgagcaacatcatggataccatcgctga 273
                ||||||| ||||||||||||||| |||||
Sbjct: 32190001 atgagcagcatcatggataccattgctga 32189973
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>dbj|AK103025.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117B12, full
           insert sequence
          Length = 1088

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 193 catcatggataccatcgctgacaagctccctaagcagaagtctg 236
           ||||||||||||||| ||||| || || ||||||||||| ||||
Sbjct: 194 catcatggataccattgctgagaaccttcctaagcagaaatctg 237



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 245 atgagcaacatcatggataccatcgctga 273
           ||||||| ||||||||||||||| |||||
Sbjct: 186 atgagcagcatcatggataccattgctga 214
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>dbj|AK103023.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117A12, full
           insert sequence
          Length = 1088

 Score = 48.1 bits (24), Expect = 0.017
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                       
Query: 193 catcatggataccatcgctgacaagctccctaagcagaagtctg 236
           ||||||||||||||| ||||| || || ||||||||||| ||||
Sbjct: 194 catcatggataccattgctgagaaccttcctaagcagaaatctg 237



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 245 atgagcaacatcatggataccatcgctga 273
           ||||||| ||||||||||||||| |||||
Sbjct: 186 atgagcagcatcatggataccattgctga 214
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>ref|XM_501233.1| Yarrowia lipolytica CLIB122, YALI0B22704g predicted mRNA
          Length = 4824

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 248  agcaacatcatggataccatc 268
            |||||||||||||||||||||
Sbjct: 3579 agcaacatcatggataccatc 3559



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 189  gcaacatcatggataccatc 208
            ||||||||||||||||||||
Sbjct: 3578 gcaacatcatggataccatc 3559
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>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica
          Length = 3066374

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 248     agcaacatcatggataccatc 268
               |||||||||||||||||||||
Sbjct: 2981615 agcaacatcatggataccatc 2981635



 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 189     gcaacatcatggataccatc 208
               ||||||||||||||||||||
Sbjct: 2981616 gcaacatcatggataccatc 2981635
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>dbj|AK182826.1| Mus musculus cDNA, clone:Y0G0123N14, strand:unspecified
          Length = 436

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 85  gaagccggagcctccccgac 104
           ||||||||||||||||||||
Sbjct: 235 gaagccggagcctccccgac 254
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>emb|AL772351.12| Mouse DNA sequence from clone RP24-199N10 on chromosome 4, complete
             sequence
          Length = 78426

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   ccctcctcgggagctccaag 139
             ||||||||||||||||||||
Sbjct: 55481 ccctcctcgggagctccaag 55500
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>emb|AL354822.8| Human DNA sequence from clone RP11-474C22 on chromosome 22,
           complete sequence
          Length = 161147

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 227 cagaagtctgataacatcatgagcaaca 254
           ||||||||||| |||||| |||||||||
Sbjct: 456 cagaagtctgacaacatcctgagcaaca 429


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,639,298
Number of Sequences: 3902068
Number of extensions: 1639298
Number of successful extensions: 30292
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30244
Number of HSP's gapped (non-prelim): 48
length of query: 316
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 294
effective length of database: 17,147,199,772
effective search space: 5041276732968
effective search space used: 5041276732968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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