>CB21_WHEAT (P04784) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 266

 Score = 51.6 bits (122), Expect = 5e-07
 Identities = 26/31 (83%), Positives = 28/31 (90%)
 Frame = +2

Query: 122 GKAVKDLPSSALFGEARVTMRKTAAKAKPVS 214
           GKAVK+LPSSAL G+ARV MRKTAAKAK VS
Sbjct: 15  GKAVKNLPSSALIGDARVNMRKTAAKAKQVS 45

>CB29_MAIZE (P27497) Chlorophyll a-b binding protein M9, chloroplast precursor|
           (LHCII type I CAB-M9) (LHCP)
          Length = 265

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 25/31 (80%), Positives = 28/31 (90%)
 Frame = +2

Query: 122 GKAVKDLPSSALFGEARVTMRKTAAKAKPVS 214
           GKAV ++PSS LFGEARVTMRKTAAKAKP +
Sbjct: 15  GKAV-NVPSS-LFGEARVTMRKTAAKAKPAA 43

>CB22_MAIZE (P06671) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 265

 Score = 42.4 bits (98), Expect = 3e-04
 Identities = 24/31 (77%), Positives = 28/31 (90%)
 Frame = +2

Query: 122 GKAVKDLPSSALFGEARVTMRKTAAKAKPVS 214
           GKAV ++PSS+ FGEARVTMRKTAAKAKP +
Sbjct: 15  GKAV-NVPSSS-FGEARVTMRKTAAKAKPAA 43

>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 265

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 19/23 (82%), Positives = 21/23 (91%)
 Frame = +2

Query: 146 SSALFGEARVTMRKTAAKAKPVS 214
           SSALFGEAR+TMRKTAAK KP +
Sbjct: 21  SSALFGEARITMRKTAAKPKPAA 43

>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor|
           (LHCII type I CAB-C) (LHCP)
          Length = 267

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 22/32 (68%), Positives = 26/32 (81%), Gaps = 1/32 (3%)
 Frame = +2

Query: 122 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVS 214
           GKAVK  PSS+ + G  +VTMRKTA+KAKPVS
Sbjct: 15  GKAVKLSPSSSEITGNGKVTMRKTASKAKPVS 46

>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor|
           (LHCII type I CAB-16) (LHCP)
          Length = 266

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 22/32 (68%), Positives = 26/32 (81%), Gaps = 1/32 (3%)
 Frame = +2

Query: 122 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVS 214
           GKAVK  PSS+ + G  +VTMRKTA+KAKPVS
Sbjct: 14  GKAVKLSPSSSEVTGNGKVTMRKTASKAKPVS 45

>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor|
           (LHCII type I CAB-3C) (LHCP)
          Length = 267

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 22/32 (68%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
 Frame = +2

Query: 122 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVS 214
           GKAVK  PSS+ + G  RVTMRKTA KAKP S
Sbjct: 15  GKAVKLSPSSSEITGNGRVTMRKTATKAKPAS 46

>CB2F_LYCES (P14277) Chlorophyll a-b binding protein 3B, chloroplast precursor|
           (LHCII type I CAB-3B) (LHCP) (Fragments)
          Length = 267

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 21/32 (65%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
 Frame = +2

Query: 122 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVS 214
           GKAVK  PSS+ + G  R+TMRKTAAK KP S
Sbjct: 15  GKAVKLSPSSSEISGNGRITMRKTAAKPKPAS 46

>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor|
           (LHCII type I CAB-E) (LHCP)
          Length = 266

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 22/32 (68%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
 Frame = +2

Query: 122 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVS 214
           GKAVK  PSS+ + G  +VTMRKTA KAKPVS
Sbjct: 14  GKAVKLSPSSSEVTGNGKVTMRKTANKAKPVS 45

>CB2E_LYCES (P14276) Chlorophyll a-b binding protein 3A, chloroplast precursor|
           (LHCII type I CAB-3A) (LHCP) (Fragments)
          Length = 267

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 20/32 (62%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +2

Query: 122 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVS 214
           GK VK  PSS+ + G  R+TMRKTAAK KP S
Sbjct: 15  GKTVKLAPSSSEITGNGRITMRKTAAKPKPAS 46

>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor|
           (LHCII type I CAB-50) (LHCP)
          Length = 267

 Score = 37.4 bits (85), Expect = 0.011
 Identities = 20/32 (62%), Positives = 24/32 (75%), Gaps = 1/32 (3%)
 Frame = +2

Query: 122 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVS 214
           GKAVK  PSS+ + G  +VTMRKT  KAKP+S
Sbjct: 15  GKAVKLSPSSSEITGNGKVTMRKTVTKAKPLS 46

>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor|
           (LHCII type I CAB-91R) (LHCP)
          Length = 267

 Score = 37.4 bits (85), Expect = 0.011
 Identities = 20/32 (62%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +2

Query: 122 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVS 214
           GKAVK  PSS+ + G  + TMRKT  KAKPVS
Sbjct: 15  GKAVKFSPSSSEITGNGKATMRKTVTKAKPVS 46

>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor|
           (LHCII type I CAB-40) (LHCP)
          Length = 267

 Score = 37.4 bits (85), Expect = 0.011
 Identities = 21/32 (65%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
 Frame = +2

Query: 122 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVS 214
           GKAVK  PSS+ + G  +VTMRKTA+KAK VS
Sbjct: 15  GKAVKLSPSSSEITGNGKVTMRKTASKAKTVS 46

>CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chloroplast precursor|
           (LHCII type I CAB-22L) (LHCP)
          Length = 267

 Score = 37.0 bits (84), Expect = 0.014
 Identities = 20/32 (62%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
 Frame = +2

Query: 122 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVS 214
           GK VK  PSS+ + G  + TMRKTA KAKPVS
Sbjct: 15  GKVVKLSPSSSEITGNGKATMRKTATKAKPVS 46

>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor|
           (LHCII type I CAB-25) (LHCP)
          Length = 266

 Score = 35.8 bits (81), Expect = 0.031
 Identities = 18/31 (58%), Positives = 20/31 (64%)
 Frame = +2

Query: 122 GKAVKDLPSSALFGEARVTMRKTAAKAKPVS 214
           GKAV    SS + G  + TMRKT  KAKPVS
Sbjct: 15  GKAVNVPSSSQITGNGKATMRKTVTKAKPVS 45

>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor|
           (LHCII type I CAB-22R) (LHCP)
          Length = 267

 Score = 34.7 bits (78), Expect = 0.069
 Identities = 19/32 (59%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 122 GKAVK-DLPSSALFGEARVTMRKTAAKAKPVS 214
           GKAVK    SS + G  +VTMRKT  KAKP S
Sbjct: 15  GKAVKLSSSSSEITGNGKVTMRKTVTKAKPAS 46

>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 267

 Score = 34.3 bits (77), Expect = 0.091
 Identities = 19/31 (61%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +2

Query: 122 GKAVKDLPS-SALFGEARVTMRKTAAKAKPV 211
           GKAVK  P+ S + GE R+TMRKTA K K V
Sbjct: 15  GKAVKLGPTASEIIGEGRITMRKTAGKPKTV 45

>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast precursor|
           (LHCII type I CAB-13) (LHCP)
          Length = 266

 Score = 34.3 bits (77), Expect = 0.091
 Identities = 18/31 (58%), Positives = 20/31 (64%)
 Frame = +2

Query: 122 GKAVKDLPSSALFGEARVTMRKTAAKAKPVS 214
           GKAV    SS +    +VTMRKT  KAKPVS
Sbjct: 15  GKAVNVPSSSEITRNGKVTMRKTVTKAKPVS 45

>CB22_HORVU (P08963) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 264

 Score = 33.9 bits (76), Expect = 0.12
 Identities = 19/29 (65%), Positives = 24/29 (82%), Gaps = 1/29 (3%)
 Frame = +2

Query: 122 GKAVKDLPSSA-LFGEARVTMRKTAAKAK 205
           GKAVK+L SS+ + G+ARV+MRKTAA  K
Sbjct: 15  GKAVKNLSSSSEVQGDARVSMRKTAATKK 43

>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor|
           (LHCII type I CAB-48) (LHCP)
          Length = 264

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +2

Query: 155 LFGEARVTMRKTAAKAKP 208
           +FGE R+TMRKTAAK KP
Sbjct: 24  VFGEGRITMRKTAAKPKP 41

>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor|
           (LHCII type I CAB-7) (LHCP)
          Length = 267

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 18/32 (56%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 122 GKAVKDLPSSA-LFGEARVTMRKTAAKAKPVS 214
           G AVK  PSS+ + G  +  MRKT  KAKPVS
Sbjct: 15  GNAVKLSPSSSEITGNGKAIMRKTVTKAKPVS 46

>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 261

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +2

Query: 146 SSALFGEARVTMRKTAAKAKPVS 214
           ++ +FGE R+TMRK+AAK KP +
Sbjct: 18  AAKVFGEGRITMRKSAAKPKPAA 40

>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (CAB-140) (LHCP)
          Length = 267

 Score = 32.0 bits (71), Expect = 0.45
 Identities = 18/29 (62%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +2

Query: 122 GKAVKDLPS-SALFGEARVTMRKTAAKAK 205
           GKAVK  P+ S + G  RVTMRKT AK K
Sbjct: 15  GKAVKLSPAASEVLGSGRVTMRKTVAKPK 43

>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor|
           (Allergen Api g 3)
          Length = 264

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 17/24 (70%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
 Frame = +2

Query: 122 GKAVKDLPSSA-LFGEARVTMRKT 190
           GKAVK  PSS+ LFG  RV+MRKT
Sbjct: 15  GKAVKVAPSSSELFGNGRVSMRKT 38

>CB2C_LYCES (P14275) Chlorophyll a-b binding protein 1C, chloroplast precursor|
           (LHCII type I CAB-1C) (LHCP) (Fragments)
          Length = 265

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 122 GKAVKDLPS-SALFGEARVTMRKTAAKAKPVS 214
           G+AVK  PS S + G  R+TMRK  AK+ P S
Sbjct: 15  GQAVKLSPSASEISGNGRITMRKAVAKSAPSS 46

>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor|
           (LHCII type I CAB-1B) (LHCP)
          Length = 265

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 122 GKAVKDLPS-SALFGEARVTMRKTAAKAKPVS 214
           G+AVK  PS S + G  R+TMRK  AK+ P S
Sbjct: 15  GQAVKLSPSASEISGNGRITMRKAVAKSAPSS 46

>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast|
           precursor (LHCII type I CAB-165/180)
          Length = 267

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 17/29 (58%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 122 GKAVKDLPS-SALFGEARVTMRKTAAKAK 205
           GKAV   P+ S + G  RVTMRKT AK K
Sbjct: 15  GKAVNLSPAASEVLGSGRVTMRKTVAKPK 43

>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 266

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 17/30 (56%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 122 GKAVKDLP-SSALFGEARVTMRKTAAKAKP 208
           GKAVK  P +S +FG  RVTMRKT     P
Sbjct: 15  GKAVKLSPGASEVFGTGRVTMRKTVKPTGP 44

>CB2A_LYCES (P14274) Chlorophyll a-b binding protein 1A, chloroplast precursor|
           (LHCII type I CAB-1A) (LHCP) (Fragments)
          Length = 265

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 122 GKAVKDLPS-SALFGEARVTMRKTAAKAKPVS 214
           G+AVK  PS S   G  R+TMRK  AK+ P S
Sbjct: 15  GQAVKLSPSASENSGNGRITMRKAVAKSAPSS 46

>CB22_PEA (P07371) Chlorophyll a-b binding protein AB80, chloroplast|
           precursor (LHCII type I CAB-AB80) (LHCP)
          Length = 269

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = +2

Query: 122 GKAVKDLPSSALFGEARVTMRKTAAKAKPVS 214
           GK +K  PSS   G AR TMRK+A   K  S
Sbjct: 18  GKQLKLNPSSQELGAARFTMRKSATTKKVAS 48

>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 256

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +2

Query: 122 GKAVKDLPSSALFGEARVTMRKTAAK 199
           G+A+K  PS+   G  RV+MRKTA K
Sbjct: 15  GQAMKLAPSTPELGVGRVSMRKTAPK 40


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,214,000
Number of Sequences: 219361
Number of extensions: 334539
Number of successful extensions: 1141
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1139
length of database: 80,573,946
effective HSP length: 47
effective length of database: 70,263,979
effective search space used: 1686335496
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)