ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet60g06 |
|---|---|
| Clone Library Name | barley_pub |
>tpg|BK000629.1| TPA: TPA_exp: Mus musculus otopetrin 2 (Otop2) gene, complete cds Length = 53301 Score = 42.1 bits (21), Expect = 0.25 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 aagctcacacaagtcacaagc 23 ||||||||||||||||||||| Sbjct: 25451 aagctcacacaagtcacaagc 25471
>dbj|AB087501.1| Mus musculus js genes for Jackson shaker and hypothetical protein, complete and partial cds Length = 72195 Score = 42.1 bits (21), Expect = 0.25 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 aagctcacacaagtcacaagc 23 ||||||||||||||||||||| Sbjct: 54767 aagctcacacaagtcacaagc 54787
>emb|AL603828.9| Mouse DNA sequence from clone RP23-117K15 on chromosome 11, complete sequence Length = 210982 Score = 42.1 bits (21), Expect = 0.25 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 aagctcacacaagtcacaagc 23 ||||||||||||||||||||| Sbjct: 132673 aagctcacacaagtcacaagc 132693
>gb|AC135459.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0004P24, complete sequence Length = 137721 Score = 40.1 bits (20), Expect = 0.98 Identities = 23/24 (95%) Strand = Plus / Plus Query: 67 cacgtcgacctcatcccggggatg 90 |||||||| ||||||||||||||| Sbjct: 18281 cacgtcgagctcatcccggggatg 18304
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 0.98 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 cacgtcgacctcatcccggggatg 90 |||||||| ||||||||||||||| Sbjct: 7798674 cacgtcgagctcatcccggggatg 7798651
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 0.98 Identities = 23/24 (95%) Strand = Plus / Minus Query: 67 cacgtcgacctcatcccggggatg 90 |||||||| ||||||||||||||| Sbjct: 7868761 cacgtcgagctcatcccggggatg 7868738
>gb|AC125361.4| Mus musculus BAC clone RP23-93M7 from chromosome 12, complete sequence Length = 202234 Score = 38.2 bits (19), Expect = 3.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 tcacacaagtcacaagcta 25 ||||||||||||||||||| Sbjct: 82724 tcacacaagtcacaagcta 82742
>gb|AC163282.3| Mus musculus BAC clone RP23-454I20 from chromosome 12, complete sequence Length = 202583 Score = 38.2 bits (19), Expect = 3.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 7 tcacacaagtcacaagcta 25 ||||||||||||||||||| Sbjct: 2176 tcacacaagtcacaagcta 2194
>gb|AY098942.1| Homarus americanus ionotropic glutamate receptor subunit mRNA, complete cds Length = 3514 Score = 38.2 bits (19), Expect = 3.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 25 atgatgaacccaaagagcc 43 ||||||||||||||||||| Sbjct: 2150 atgatgaacccaaagagcc 2132
>ref|XM_218851.3| PREDICTED: Rattus norvegicus interleukin 16 (Il16), mRNA Length = 4860 Score = 38.2 bits (19), Expect = 3.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 37 aagagccgtgtccaggggt 55 ||||||||||||||||||| Sbjct: 1886 aagagccgtgtccaggggt 1904
>gb|AC002523.1|AC002523 Homo sapiens Xq28 BACs 360 F12, GSHB-555C13, complete sequence Length = 228516 Score = 38.2 bits (19), Expect = 3.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 23 ctatgatgaacccaaagag 41 ||||||||||||||||||| Sbjct: 198125 ctatgatgaacccaaagag 198107
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 38.2 bits (19), Expect = 3.9 Identities = 19/19 (100%) Strand = Plus / Plus Query: 63 cgaccacgtcgacctcatc 81 ||||||||||||||||||| Sbjct: 1790620 cgaccacgtcgacctcatc 1790638
>emb|CT573418.2| Pan troglodytes chromosome X clone PTB-046H01 map Xq28, complete sequence Length = 161084 Score = 38.2 bits (19), Expect = 3.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 23 ctatgatgaacccaaagag 41 ||||||||||||||||||| Sbjct: 15991 ctatgatgaacccaaagag 15973
>emb|CT574566.2| Pan troglodytes chromosome X clone CH251-413C05 map Xq28, complete sequence Length = 161928 Score = 38.2 bits (19), Expect = 3.9 Identities = 19/19 (100%) Strand = Plus / Minus Query: 23 ctatgatgaacccaaagag 41 ||||||||||||||||||| Sbjct: 75192 ctatgatgaacccaaagag 75174 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 865,468 Number of Sequences: 3902068 Number of extensions: 865468 Number of successful extensions: 39760 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39677 Number of HSP's gapped (non-prelim): 83 length of query: 90 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 69 effective length of database: 17,151,101,840 effective search space: 1183426026960 effective search space used: 1183426026960 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
