ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet60f12 |
|---|---|
| Clone Library Name | barley_pub |
>MPPB_ARATH (Q42290) Probable mitochondrial-processing peptidase beta subunit,| mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) Length = 531 Score = 169 bits (429), Expect = 1e-42 Identities = 81/91 (89%), Positives = 87/91 (95%) Frame = +3 Query: 3 TGSEVRIIDDDMPLAQFAVAFNGASWTDPDSTALMVMQTMLGSWNKSAGGGKHMGSELVQ 182 TGSEVR+IDDD+PLAQFAVAF GASWTDPDS ALMVMQTMLGSWNK+ GGGKH+GS+L Q Sbjct: 322 TGSEVRMIDDDLPLAQFAVAFEGASWTDPDSVALMVMQTMLGSWNKNVGGGKHVGSDLTQ 381 Query: 183 RVAINDIAESIMAFNTNYKDTGLFGVYAVAK 275 RVAIN+IAESIMAFNTNYKDTGLFGVYAVAK Sbjct: 382 RVAINEIAESIMAFNTNYKDTGLFGVYAVAK 412
>MPPB_BOVIN (Q3SZ71) Mitochondrial-processing peptidase beta subunit,| mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) Length = 490 Score = 99.8 bits (247), Expect = 2e-21 Identities = 43/92 (46%), Positives = 61/92 (66%) Frame = +3 Query: 3 TGSEVRIIDDDMPLAQFAVAFNGASWTDPDSTALMVMQTMLGSWNKSAGGGKHMGSELVQ 182 TGSE+R+ DD MPLA AVA W PD+ LMV T++G+W++S GGG ++ S+L Q Sbjct: 281 TGSEIRVRDDKMPLAHLAVAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQ 340 Query: 183 RVAINDIAESIMAFNTNYKDTGLFGVYAVAKP 278 ++ S +FNT+Y DTGL+G+Y V +P Sbjct: 341 LTCHGNLCHSFQSFNTSYTDTGLWGIYMVCEP 372
>MPPB_PONPY (Q5REK3) Mitochondrial-processing peptidase beta subunit,| mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) Length = 489 Score = 98.6 bits (244), Expect = 4e-21 Identities = 42/92 (45%), Positives = 61/92 (66%) Frame = +3 Query: 3 TGSEVRIIDDDMPLAQFAVAFNGASWTDPDSTALMVMQTMLGSWNKSAGGGKHMGSELVQ 182 TGSE+R+ DD MPLA A+A W PD+ LMV T++G+W++S GGG ++ S+L Q Sbjct: 280 TGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQ 339 Query: 183 RVAINDIAESIMAFNTNYKDTGLFGVYAVAKP 278 ++ S +FNT+Y DTGL+G+Y V +P Sbjct: 340 LTCHGNLCHSFQSFNTSYTDTGLWGLYMVCEP 371
>MPPB_RAT (Q03346) Mitochondrial-processing peptidase beta subunit,| mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) (P-52) Length = 489 Score = 98.2 bits (243), Expect = 5e-21 Identities = 43/91 (47%), Positives = 61/91 (67%) Frame = +3 Query: 3 TGSEVRIIDDDMPLAQFAVAFNGASWTDPDSTALMVMQTMLGSWNKSAGGGKHMGSELVQ 182 TGSE+R+ DD MPLA AVA WT PD+ LMV T++G+W++S GGG ++ S+L Q Sbjct: 280 TGSEIRVRDDKMPLAHLAVAIEAVGWTHPDTIRLMVANTLIGNWDRSFGGGMNLSSKLAQ 339 Query: 183 RVAINDIAESIMAFNTNYKDTGLFGVYAVAK 275 ++ S +FNT+Y DTGL+G+Y V + Sbjct: 340 LTCHGNLCHSFQSFNTSYTDTGLWGLYMVCE 370
>MPPB_MOUSE (Q9CXT8) Mitochondrial-processing peptidase beta subunit,| mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) (P-52) Length = 489 Score = 95.9 bits (237), Expect = 2e-20 Identities = 41/91 (45%), Positives = 60/91 (65%) Frame = +3 Query: 3 TGSEVRIIDDDMPLAQFAVAFNGASWTDPDSTALMVMQTMLGSWNKSAGGGKHMGSELVQ 182 TGSE+R+ DD MPLA A+A W PD+ LMV T++G+W++S GGG ++ S+L Q Sbjct: 280 TGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQ 339 Query: 183 RVAINDIAESIMAFNTNYKDTGLFGVYAVAK 275 ++ S +FNT+Y DTGL+G+Y V + Sbjct: 340 LTCHGNLCHSFQSFNTSYTDTGLWGLYMVCE 370
>MPPB_HUMAN (O75439) Mitochondrial-processing peptidase beta subunit,| mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) (P-52) Length = 489 Score = 95.9 bits (237), Expect = 2e-20 Identities = 41/91 (45%), Positives = 60/91 (65%) Frame = +3 Query: 3 TGSEVRIIDDDMPLAQFAVAFNGASWTDPDSTALMVMQTMLGSWNKSAGGGKHMGSELVQ 182 TGSE+R+ DD MPLA A+A W PD+ LMV T++G+W++S GGG ++ S+L Q Sbjct: 280 TGSEIRVRDDKMPLAHLAIAVEAVGWAHPDTICLMVANTLIGNWDRSFGGGMNLSSKLAQ 339 Query: 183 RVAINDIAESIMAFNTNYKDTGLFGVYAVAK 275 ++ S +FNT+Y DTGL+G+Y V + Sbjct: 340 LTCHGNLCHSFQSFNTSYTDTGLWGLYMVCE 370
>MPPB_LENED (Q9Y8B5) Mitochondrial-processing peptidase beta subunit,| mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) Length = 466 Score = 90.9 bits (224), Expect = 8e-19 Identities = 39/90 (43%), Positives = 60/90 (66%) Frame = +3 Query: 6 GSEVRIIDDDMPLAQFAVAFNGASWTDPDSTALMVMQTMLGSWNKSAGGGKHMGSELVQR 185 GSE RI DD++P A A+A G W+ PD +MVMQ++ G+W++S G + S L Sbjct: 257 GSEARIRDDELPTAHVAIAVEGVGWSSPDYFPMMVMQSIFGNWDRSLGASSLLSSRLSHI 316 Query: 186 VAINDIAESIMAFNTNYKDTGLFGVYAVAK 275 ++ N +A S M+F+T+Y DTGL+G+Y V++ Sbjct: 317 ISSNSLANSFMSFSTSYSDTGLWGIYLVSE 346
>MPPB_SCHPO (Q9P7X1) Probable mitochondrial-processing peptidase beta subunit,| mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) (PEP) Length = 457 Score = 88.6 bits (218), Expect = 4e-18 Identities = 39/90 (43%), Positives = 57/90 (63%) Frame = +3 Query: 6 GSEVRIIDDDMPLAQFAVAFNGASWTDPDSTALMVMQTMLGSWNKSAGGGKHMGSELVQR 185 GSE+R DDD P A A+A G SW PD +VMQ ++G+W+++ G H+ S L Sbjct: 249 GSEIRARDDDSPTANIAIAVEGMSWKHPDYFTALVMQAIIGNWDRAMGASPHLSSRLSTI 308 Query: 186 VAINDIAESIMAFNTNYKDTGLFGVYAVAK 275 V + +A S M+F+T+Y DTGL+G+Y V + Sbjct: 309 VQQHQLANSFMSFSTSYSDTGLWGIYLVTE 338
>MPPB_BLAEM (Q00302) Mitochondrial-processing peptidase beta subunit,| mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) (BeMPP1) Length = 465 Score = 87.8 bits (216), Expect = 6e-18 Identities = 44/87 (50%), Positives = 59/87 (67%) Frame = +3 Query: 3 TGSEVRIIDDDMPLAQFAVAFNGASWTDPDSTALMVMQTMLGSWNKSAGGGKHMGSELVQ 182 TGS+VRI DDMP A A+A GASWT D L+V M+GS++++AG H S+L Q Sbjct: 256 TGSDVRIRVDDMPTAHIALAVEGASWTSADHWPLLVASAMIGSYDRAAGNA-HPSSKLAQ 314 Query: 183 RVAINDIAESIMAFNTNYKDTGLFGVY 263 VA +++A S +FNT Y DTGL+G+Y Sbjct: 315 IVAKHNLANSFTSFNTTYSDTGLWGIY 341
>MPPB_NEUCR (P11913) Mitochondrial-processing peptidase beta subunit,| mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) (Ubiquinol-cytochrome-c reductase complex core protein I) (EC 1.10.2.2) Length = 476 Score = 84.7 bits (208), Expect = 5e-17 Identities = 39/88 (44%), Positives = 59/88 (67%) Frame = +3 Query: 6 GSEVRIIDDDMPLAQFAVAFNGASWTDPDSTALMVMQTMLGSWNKSAGGGKHMGSELVQR 185 GS++RI DD +P A A+A G SW+D D +V Q ++G+++K+ G H GS+L Sbjct: 267 GSDIRIRDDTIPTANIAIAVEGVSWSDDDYFTGLVTQAIVGNYDKALGNAPHQGSKLSGF 326 Query: 186 VAINDIAESIMAFNTNYKDTGLFGVYAV 269 V +D+A S M+F+T+Y DTGL+G+Y V Sbjct: 327 VHKHDLATSFMSFSTSYSDTGLWGIYLV 354
>UQCR1_MOUSE (Q9CZ13) Ubiquinol-cytochrome-c reductase complex core protein I,| mitochondrial precursor (EC 1.10.2.2) Length = 480 Score = 80.5 bits (197), Expect = 1e-15 Identities = 36/89 (40%), Positives = 51/89 (57%) Frame = +3 Query: 3 TGSEVRIIDDDMPLAQFAVAFNGASWTDPDSTALMVMQTMLGSWNKSAGGGKHMGSELVQ 182 TGSE+R DD +PLA A+A G W +PD+ L V ++G ++ + GGG H+ S L Sbjct: 271 TGSEIRHRDDALPLAHVAIAVEGPGWANPDNVTLQVANAIIGHYDCTCGGGVHLSSPLAS 330 Query: 183 RVAINDIAESIMAFNTNYKDTGLFGVYAV 269 N + +S FN +Y DTGL G + V Sbjct: 331 VAVANKLCQSFQTFNISYSDTGLLGAHFV 359
>UQCR1_BOVIN (P31800) Ubiquinol-cytochrome-c reductase complex core protein I,| mitochondrial precursor (EC 1.10.2.2) Length = 480 Score = 75.1 bits (183), Expect = 4e-14 Identities = 35/89 (39%), Positives = 50/89 (56%) Frame = +3 Query: 3 TGSEVRIIDDDMPLAQFAVAFNGASWTDPDSTALMVMQTMLGSWNKSAGGGKHMGSELVQ 182 TGS++ +D +PLA A+A G W PD+ AL V ++G ++ + GGG H+ S L Sbjct: 271 TGSQICHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLAS 330 Query: 183 RVAINDIAESIMAFNTNYKDTGLFGVYAV 269 A N + +S FN Y DTGL G + V Sbjct: 331 IAATNKLCQSFQTFNICYADTGLLGAHFV 359
>UQCR1_HUMAN (P31930) Ubiquinol-cytochrome-c reductase complex core protein I,| mitochondrial precursor (EC 1.10.2.2) Length = 480 Score = 74.3 bits (181), Expect = 7e-14 Identities = 34/89 (38%), Positives = 49/89 (55%) Frame = +3 Query: 3 TGSEVRIIDDDMPLAQFAVAFNGASWTDPDSTALMVMQTMLGSWNKSAGGGKHMGSELVQ 182 TGSE+R DD +P A A+A G W PD+ AL V ++G ++ + GGG H+ S L Sbjct: 271 TGSEIRHRDDALPFAHVAIAVEGPGWASPDNVALQVANAIIGHYDCTYGGGVHLSSPLAS 330 Query: 183 RVAINDIAESIMAFNTNYKDTGLFGVYAV 269 N + +S F+ Y +TGL G + V Sbjct: 331 GAVANKLCQSFQTFSICYAETGLLGAHFV 359
>YMT1_CAEEL (P98080) Hypothetical protein F56D2.1 in chromosome III| Length = 471 Score = 67.8 bits (164), Expect = 7e-12 Identities = 33/90 (36%), Positives = 49/90 (54%) Frame = +3 Query: 3 TGSEVRIIDDDMPLAQFAVAFNGASWTDPDSTALMVMQTMLGSWNKSAGGGKHMGSELVQ 182 TGSE R +D++P A A G + D+ AL + +G W+ + + S LVQ Sbjct: 259 TGSEYRYRNDNVPHMYAAFAVEGVGYAHKDALALQIANQFIGQWDVTHATSRTAASRLVQ 318 Query: 183 RVAINDIAESIMAFNTNYKDTGLFGVYAVA 272 ++ + ++ FN NYKDTGLFG+Y VA Sbjct: 319 KIGHDHGVHNLQHFNINYKDTGLFGIYFVA 348
>MPPB_YEAST (P10507) Mitochondrial-processing peptidase beta subunit,| mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) (PEP) Length = 462 Score = 62.8 bits (151), Expect = 2e-10 Identities = 29/84 (34%), Positives = 50/84 (59%), Gaps = 1/84 (1%) Frame = +3 Query: 21 IIDDDMPLAQFAVAFNGASWTDPDSTALMVMQTMLGSWNKSAGGGKHMGSELVQRVAIN- 197 I ++ +P A+A G SW+ PD + Q ++G+W+++ G G + S L + N Sbjct: 258 IKENTLPTTHIAIALEGVSWSAPDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNG 317 Query: 198 DIAESIMAFNTNYKDTGLFGVYAV 269 +A S M+F+T+Y D+GL+G+Y V Sbjct: 318 SLANSYMSFSTSYADSGLWGMYIV 341
>MPPA_NEUCR (P23955) Mitochondrial-processing peptidase alpha subunit,| mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP) Length = 577 Score = 49.3 bits (116), Expect = 3e-06 Identities = 34/77 (44%), Positives = 44/77 (57%), Gaps = 3/77 (3%) Frame = +3 Query: 57 VAFNGASWTDPDSTALMVMQTMLGSWNK-SAGG-GKHMGSELVQRVAI-NDIAESIMAFN 227 +AF G + +D D AL +QT+LG SAGG GK M S L V + ES +AFN Sbjct: 361 LAFEGLAISDDDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTNVLNQHGWVESCVAFN 420 Query: 228 TNYKDTGLFGVYAVAKP 278 +Y D+GLFG+ A P Sbjct: 421 HSYTDSGLFGIAASCYP 437
>MPPA1_ARATH (Q9ZU25) Probable mitochondrial-processing peptidase alpha subunit| 1, mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP 1) Length = 503 Score = 48.5 bits (114), Expect = 4e-06 Identities = 34/81 (41%), Positives = 45/81 (55%), Gaps = 5/81 (6%) Frame = +3 Query: 51 FAVAFNGASWTDPDS--TALMVMQTMLGSWNKSAGG-GKHMGSELVQRVAINDIAE--SI 215 FAVAF W + TA ++ M G + SAGG GK M S L +RV +N+ E S Sbjct: 310 FAVAFEVPGWNNEKEAVTATVLQMLMGGGGSFSAGGPGKGMHSWLYRRV-LNEYQEVQSC 368 Query: 216 MAFNTNYKDTGLFGVYAVAKP 278 AF + + DTGLFG+Y + P Sbjct: 369 TAFTSIFNDTGLFGIYGCSSP 389
>MPPA_SCHPO (O94745) Probable mitochondrial-processing peptidase alpha subunit,| mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP) Length = 494 Score = 47.8 bits (112), Expect = 7e-06 Identities = 35/89 (39%), Positives = 45/89 (50%), Gaps = 4/89 (4%) Frame = +3 Query: 9 SEVRIIDDDMPLAQFAVAFNGASWTDPDSTALMVMQTMLGSWNK-SAGG-GKHMGSELVQ 182 SE + +A G TDPD AL +Q +LG SAGG GK M S L Sbjct: 275 SEAPPVPYQQEFTHVVIAMEGLPVTDPDIYALACLQFLLGGGGSFSAGGPGKGMYSRLYL 334 Query: 183 RVAINDI--AESIMAFNTNYKDTGLFGVY 263 V +N E+ MAFN +Y D+GLFG++ Sbjct: 335 NV-LNQYPWVETCMAFNHSYTDSGLFGMF 362
>UQCR1_YEAST (P07256) Ubiquinol-cytochrome-c reductase complex core protein I,| mitochondrial precursor (EC 1.10.2.2) Length = 457 Score = 47.8 bits (112), Expect = 7e-06 Identities = 24/84 (28%), Positives = 43/84 (51%) Frame = +3 Query: 6 GSEVRIIDDDMPLAQFAVAFNGASWTDPDSTALMVMQTMLGSWNKSAGGGKHMGSELVQR 185 GSEVR+ DD +P A ++A G P+ + + GS+N + G +L+ Sbjct: 246 GSEVRLRDDTLPKAWISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLLDN 305 Query: 186 VAINDIAESIMAFNTNYKDTGLFG 257 + + ++ F+ +YKD+GL+G Sbjct: 306 IQEYQLCDNFNHFSLSYKDSGLWG 329
>MPPA_YEAST (P11914) Mitochondrial-processing peptidase alpha subunit,| mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP) Length = 482 Score = 45.1 bits (105), Expect = 5e-05 Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 4/77 (5%) Frame = +3 Query: 42 LAQFAVAFNGASWTDPDSTALMVMQTMLGSWNK-SAGG-GKHMGSELVQRVAIND--IAE 209 L + F G PD AL +QT+LG SAGG GK M S L V +N E Sbjct: 256 LFHIQIGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHV-LNQYYFVE 314 Query: 210 SIMAFNTNYKDTGLFGV 260 + +AFN +Y D+G+FG+ Sbjct: 315 NCVAFNHSYSDSGIFGI 331
>UQCR1_EUGGR (P43264) Ubiquinol-cytochrome-c reductase complex core protein I,| mitochondrial precursor (EC 1.10.2.2) Length = 494 Score = 43.5 bits (101), Expect = 1e-04 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 15/106 (14%) Frame = +3 Query: 6 GSEVRIIDDDMPLAQFAVAFNGASWTDPDSTALMVMQTMLGSWNKSAGGGKH-------- 161 G + R + PL AVAF + PD+ + V++ +LGS+++ G + Sbjct: 248 GGDKRETNQLNPLTHVAVAFQTPGISHPDAIKIKVLEQLLGSYSRDKGEAAYSCFARAIV 307 Query: 162 -------MGSELVQRVAINDIAESIMAFNTNYKDTGLFGVYAVAKP 278 +G A ++ S+ AF Y D GL G YA+A+P Sbjct: 308 MDFYDPKVGQFFRPNKAGHNPIHSLNAFWAPYSDVGLLGFYAIAEP 353
>MPPA_SOLTU (P29677) Mitochondrial-processing peptidase alpha subunit,| mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP) (Ubiquinol-cytochrome-c reductase subunit II) (EC 1.10.2.2) Length = 504 Score = 41.2 bits (95), Expect = 7e-04 Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 6/82 (7%) Frame = +3 Query: 33 DMPLAQFAVAFN--GASWTDPDSTALMVMQTMLGSWNK-SAGG-GKHMGSELVQRVAIND 200 D + FA+AF G ++ +S L V+Q ++G SAGG GK M S L RV +N Sbjct: 301 DAEMTHFALAFEVPGGWMSEKESMTLTVLQMLMGGGGSFSAGGPGKGMYSRLYLRV-LNQ 359 Query: 201 IAE--SIMAFNTNYKDTGLFGV 260 + + AF++ Y +TGLFG+ Sbjct: 360 YPQIHAFSAFSSIYNNTGLFGI 381
>UQCR2_RAT (P32551) Ubiquinol-cytochrome-c reductase complex core protein 2,| mitochondrial precursor (EC 1.10.2.2) (Complex III subunit II) Length = 452 Score = 39.7 bits (91), Expect = 0.002 Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Frame = +3 Query: 6 GSEVRIIDDDMPLAQFAVAFNGASWTDPDSTALMVMQTMLGSWNKSAGGGKHMGSELVQR 185 G E+R + D L A+ A+ + ++ A V+Q +LG+ G + S L Q Sbjct: 254 GGEIREQNGDN-LVHAAIVAESAAIGNAEANAFSVLQHLLGA-GPHIKRGNNTTSLLSQS 311 Query: 186 VAINDIAE-SIMAFNTNYKDTGLFGVYAVAK 275 VA + AFN +Y D+GLFG+Y V++ Sbjct: 312 VAKGSQQPFDVSAFNASYSDSGLFGIYTVSQ 342
>MPPA2_ARATH (O04308) Probable mitochondrial-processing peptidase alpha subunit| 2, mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP 2) Length = 499 Score = 39.3 bits (90), Expect = 0.003 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 4/80 (5%) Frame = +3 Query: 51 FAVAFNGASWTDPDSTALMVMQTML--GSWNKSAGG-GKHMGSELVQRVAI-NDIAESIM 218 FA+AF W + + + ML G + SAGG GK M S L R+ + +S Sbjct: 306 FALAFEVPGWNNEKEAIIATVLQMLMGGGGSFSAGGPGKGMHSWLYLRLLNQHQQFQSCT 365 Query: 219 AFNTNYKDTGLFGVYAVAKP 278 AF + + +TGLFG+Y P Sbjct: 366 AFTSVFNNTGLFGIYGCTSP 385
>UQCR2_MOUSE (Q9DB77) Ubiquinol-cytochrome-c reductase complex core protein 2,| mitochondrial precursor (EC 1.10.2.2) (Complex III subunit II) Length = 453 Score = 39.3 bits (90), Expect = 0.003 Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 1/91 (1%) Frame = +3 Query: 6 GSEVRIIDDDMPLAQFAVAFNGASWTDPDSTALMVMQTMLGSWNKSAGGGKHMGSELVQR 185 G E+R + D L A+ A+ + ++ A V+Q +LG+ G + S L Q Sbjct: 255 GGEIREQNGDN-LVHAAIVAESAAIGNAEANAFSVLQHLLGA-GPHIKRGNNTTSLLSQS 312 Query: 186 VAINDIAE-SIMAFNTNYKDTGLFGVYAVAK 275 VA + AFN +Y D+GLFG+Y +++ Sbjct: 313 VAKGSHQPFDVSAFNASYSDSGLFGIYTISQ 343
>UQCR2_HUMAN (P22695) Ubiquinol-cytochrome-c reductase complex core protein 2,| mitochondrial precursor (EC 1.10.2.2) (Complex III subunit II) Length = 453 Score = 37.4 bits (85), Expect = 0.010 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 1/91 (1%) Frame = +3 Query: 6 GSEVRIIDDDMPLAQFAVAFNGASWTDPDSTALMVMQTMLGSWNKSAGGGKHMGSELVQR 185 G E+R + D L A A ++ A V+Q +LG+ G + S L Q Sbjct: 255 GGEIREQNGDS-LVHAAFVAESAVAGSAEANAFSVLQHVLGA-GPHVKRGSNTTSHLHQA 312 Query: 186 VA-INDIAESIMAFNTNYKDTGLFGVYAVAK 275 VA + AFN +Y D+GLFG+Y +++ Sbjct: 313 VAKATQQPFDVSAFNASYSDSGLFGIYTISQ 343
>UQCR2_BOVIN (P23004) Ubiquinol-cytochrome-c reductase complex core protein 2,| mitochondrial precursor (EC 1.10.2.2) (Complex III subunit II) Length = 453 Score = 37.4 bits (85), Expect = 0.010 Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 1/91 (1%) Frame = +3 Query: 6 GSEVRIIDDDMPLAQFAVAFNGASWTDPDSTALMVMQTMLGSWNKSAGGGKHMGSELVQR 185 G E+R + D L A+ A+ ++ A V+Q +LG+ G + S L Q Sbjct: 255 GGEIREQNGDS-LVHAALVAESAAIGSAEANAFSVLQHVLGA-GPHVKRGSNATSSLYQA 312 Query: 186 VAINDIAE-SIMAFNTNYKDTGLFGVYAVAK 275 VA + AFN +Y D+GLFG Y +++ Sbjct: 313 VAKGVHQPFDVSAFNASYSDSGLFGFYTISQ 343
>Y5738_STRCO (O86835) Hypothetical zinc protease SCO5738 (EC 3.4.99.-)| Length = 459 Score = 37.0 bits (84), Expect = 0.013 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 1/89 (1%) Frame = +3 Query: 15 VRIIDDDMPLAQFAVAFNGASWTDPDSTALMVMQTMLGSWNKSAGGGKHMGSELVQRVAI 194 V +I A + G + TD A+ V+ T LG GG M S L Q V Sbjct: 267 VELIGRKTEQAHVILGMPGLARTDERRWAMGVLNTALG-------GG--MSSRLFQEVRE 317 Query: 195 N-DIAESIMAFNTNYKDTGLFGVYAVAKP 278 +A S+ ++ + + D GLFGVYA +P Sbjct: 318 KRGLAYSVYSYTSGFADCGLFGVYAGCRP 346
>MPPA_BLAEM (P97997) Mitochondrial-processing peptidase alpha subunit,| mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP) Length = 474 Score = 36.6 bits (83), Expect = 0.017 Identities = 31/86 (36%), Positives = 39/86 (45%), Gaps = 4/86 (4%) Frame = +3 Query: 33 DMPLAQFAVAFNGASWTDPDSTALMVMQTMLGSWNK-SAGG-GKHMGSELVQRVAINDI- 203 + L VAF +T PD + +Q ++G SAGG GK M S L V +N Sbjct: 256 EQTLTHVQVAFPVPPFTHPDMFPVSTLQVLMGGGGAFSAGGPGKGMYSRLYTNV-LNRYR 314 Query: 204 -AESIMAFNTNYKDTGLFGVYAVAKP 278 ES AF Y T LFG+ A P Sbjct: 315 WMESCAAFQHAYSSTSLFGISASCVP 340
>MPPA_MOUSE (Q9DC61) Mitochondrial-processing peptidase alpha subunit,| mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP) (P-55) Length = 524 Score = 32.0 bits (71), Expect = 0.42 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 5/84 (5%) Frame = +3 Query: 42 LAQFAVAFNGASWTDPDSTALMVMQTMLGSWNKSAGGGKHMGSELVQRVAINDIAESIMA 221 L V S+ + D V+ M+G + GG G + R+ +N + Sbjct: 316 LTHIMVGLESCSFLEDDFIPFAVLNMMMGGGGSFSAGGP--GKGMFSRLYLNVLNRHHWM 373 Query: 222 FNT-----NYKDTGLFGVYAVAKP 278 +N +Y+DTGL ++A A P Sbjct: 374 YNATSYHHSYEDTGLLCIHASADP 397
>MPPA_PONPY (Q5R513) Mitochondrial-processing peptidase alpha subunit,| mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP) Length = 525 Score = 32.0 bits (71), Expect = 0.42 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 5/84 (5%) Frame = +3 Query: 42 LAQFAVAFNGASWTDPDSTALMVMQTMLGSWNKSAGGGKHMGSELVQRVAINDIAESIMA 221 L V S+ + D V+ M+G + GG G + R+ +N + Sbjct: 317 LTHIMVGLESCSFLEEDFIPFAVLNMMMGGGGSFSAGGP--GKGMFSRLYLNVLNRHHWM 374 Query: 222 FNT-----NYKDTGLFGVYAVAKP 278 +N +Y+DTGL ++A A P Sbjct: 375 YNATSYHHSYEDTGLLCIHASADP 398
>MPPA_HUMAN (Q10713) Mitochondrial-processing peptidase alpha subunit,| mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP) (P-55) Length = 525 Score = 32.0 bits (71), Expect = 0.42 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 5/84 (5%) Frame = +3 Query: 42 LAQFAVAFNGASWTDPDSTALMVMQTMLGSWNKSAGGGKHMGSELVQRVAINDIAESIMA 221 L V S+ + D V+ M+G + GG G + R+ +N + Sbjct: 317 LTHIMVGLESCSFLEEDFIPFAVLNMMMGGGGSFSAGGP--GKGMFSRLYLNVLNRHHWM 374 Query: 222 FNT-----NYKDTGLFGVYAVAKP 278 +N +Y+DTGL ++A A P Sbjct: 375 YNATSYHHSYEDTGLLCIHASADP 398
>C4BP_HUMAN (P04003) C4b-binding protein alpha chain precursor (C4bp)| (Proline-rich protein) (PRP) Length = 597 Score = 30.0 bits (66), Expect = 1.6 Identities = 16/44 (36%), Positives = 23/44 (52%) Frame = -1 Query: 214 ILSAMSLIATLCTSSEPMCFPPPALLFQEPSMVCITINAVESGS 83 IL M+LIA L + C PPP L F P + +T ++G+ Sbjct: 32 ILFQMTLIAALLPAVLGNCGPPPTLSFAAPMDITLTETRFKTGT 75
>NEO1_MOUSE (P97798) Neogenin precursor| Length = 1493 Score = 29.6 bits (65), Expect = 2.1 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -1 Query: 184 LCTSSEPMCFPPPALLFQEPSMVCITINAVESGSVQDAP 68 LCTSS C PPP LL P ++ + A + + + P Sbjct: 11 LCTSSSRRCCPPPPLLLLLPLLLLLGRPASGAAATKSGP 49
>FIMD_SALTY (P37924) Outer membrane usher protein fimD precursor| Length = 870 Score = 29.6 bits (65), Expect = 2.1 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 9/54 (16%) Frame = +3 Query: 27 DDDMPLAQFAVAFNGASWTDPDSTALMVMQTML---------GSWNKSAGGGKH 161 D+ +P A +F G+ TD DS L ++ + G+WN S G G H Sbjct: 175 DEGIPAALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGAWNYSKGDGYH 228
>TLN1_MOUSE (P26039) Talin-1| Length = 2541 Score = 29.3 bits (64), Expect = 2.7 Identities = 13/43 (30%), Positives = 19/43 (44%) Frame = +3 Query: 3 TGSEVRIIDDDMPLAQFAVAFNGASWTDPDSTALMVMQTMLGS 131 TG R+ L Q A A G W DP+ ++ +LG+ Sbjct: 2270 TGHSKRVAGSVTELIQAAEAMKGTEWVDPEDPTVIAENELLGA 2312
>TLN1_HUMAN (Q9Y490) Talin-1| Length = 2541 Score = 29.3 bits (64), Expect = 2.7 Identities = 13/43 (30%), Positives = 19/43 (44%) Frame = +3 Query: 3 TGSEVRIIDDDMPLAQFAVAFNGASWTDPDSTALMVMQTMLGS 131 TG R+ L Q A A G W DP+ ++ +LG+ Sbjct: 2270 TGHSKRVAGSVTELIQAAEAMKGTEWVDPEDPTVIAENELLGA 2312
>AROC_YEAST (P28777) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 376 Score = 29.3 bits (64), Expect = 2.7 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +3 Query: 141 SAGGGKHMGSELVQRVAINDIAESIMAFNTN 233 S+GGG+ E + RVA IAE +A N+N Sbjct: 118 SSGGGRASARETIGRVASGAIAEKFLAQNSN 148
>FLAB1_RHIME (Q03842) Flagellin B| Length = 394 Score = 28.9 bits (63), Expect = 3.6 Identities = 13/47 (27%), Positives = 26/47 (55%) Frame = +3 Query: 12 EVRIIDDDMPLAQFAVAFNGASWTDPDSTALMVMQTMLGSWNKSAGG 152 E+ + D + A +F+G +W D + V ++++GS+ + AGG Sbjct: 111 EIDQLKDQLTSIAEAASFSGENWLQADLSGGPVTKSVVGSFVRDAGG 157
>YP183_YEAST (Q08924) WD-repeat protein YPL183C| Length = 1013 Score = 28.5 bits (62), Expect = 4.6 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 6/78 (7%) Frame = -3 Query: 233 VCVECH--YTLSYVIDCYSLYKL---RTHVLPSSSTLVPGT-KHGLHNH*CSRIGICPGC 72 VC H + L+ + D + L + R H+ +++VP T ++G+H I ICP Sbjct: 607 VCGGSHRLWNLAKITDGHVLMYIKASRFHLRKIYNSIVPETLENGVHGREIRDISICPVS 666 Query: 71 SIEGNSKLSKGHVIINDS 18 + N GH+ S Sbjct: 667 NTNTNDNFKDGHIFCTAS 684
>M3K1_RAT (Q62925) Mitogen-activated protein kinase kinase kinase 1 (EC| 2.7.11.25) (MAPK/ERK kinase kinase 1) (MEK kinase 1) (MEKK 1) Length = 1493 Score = 28.5 bits (62), Expect = 4.6 Identities = 15/37 (40%), Positives = 21/37 (56%) Frame = -1 Query: 181 CTSSEPMCFPPPALLFQEPSMVCITINAVESGSVQDA 71 C +S P+ PP L+F S C + +V +GSV DA Sbjct: 948 CLNSSPLS--PPQLMFPAISAPCSSAPSVPAGSVTDA 982
>POLG_DEN3 (P27915) Genome polyprotein [Contains: Capsid protein C (Core| protein); Envelope protein M (Matrix protein); Major envelope protein E; Nonstructural protein 1 (NS1); Nonstructural protein 2A (NS2A); Flavivirin protease NS2B regulatory subunit; Length = 3390 Score = 28.1 bits (61), Expect = 6.1 Identities = 9/24 (37%), Positives = 13/24 (54%) Frame = +1 Query: 94 LLH*WLCKPCLVPGTRVLEEGSTW 165 L+H W C+ C +P R + E W Sbjct: 1080 LIHEWCCRSCTLPPLRYMGEDGCW 1103
>MPPA_RAT (P20069) Mitochondrial-processing peptidase alpha subunit,| mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP) (P-55) Length = 524 Score = 27.7 bits (60), Expect = 7.9 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 5/70 (7%) Frame = +3 Query: 84 DPDSTALMVMQTMLGSWNKSAGGGKHMGSELVQRVAINDIAESIMAFNT-----NYKDTG 248 + D V+ M+G + GG G + R+ +N + +N +Y+DTG Sbjct: 330 EEDFIPFAVLNMMMGGGGSFSAGGP--GKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTG 387 Query: 249 LFGVYAVAKP 278 L ++A A P Sbjct: 388 LLCIHASADP 397
>ESTN_MOUSE (P23953) Liver carboxylesterase N precursor (EC 3.1.1.1) (PES-N)| (Lung surfactant convertase) Length = 554 Score = 27.7 bits (60), Expect = 7.9 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Frame = +3 Query: 63 FNGASWTDPDSTALMVMQTMLGSWNKSAGGGKHM---GSELVQRVAINDIAESIMAFNTN 233 +NG + + ++ ++ +Q LG W + G +H + L Q A+ + ++I F N Sbjct: 152 YNGLALSAHENVVVVTIQYRLGIWGLFSTGDEHSQGNWAHLDQLAALRWVQDNIANFGGN 211 Query: 234 YKDTGLFG 257 +FG Sbjct: 212 PDSVTIFG 219 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,035,844 Number of Sequences: 219361 Number of extensions: 894412 Number of successful extensions: 2511 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 2461 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2502 length of database: 80,573,946 effective HSP length: 68 effective length of database: 65,657,398 effective search space used: 1575777552 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
