ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet60d08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY103995.1| Zea mays PCO102677 mRNA sequence Length = 1225 Score = 153 bits (77), Expect = 4e-34 Identities = 101/109 (92%) Strand = Plus / Plus Query: 74 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133 |||||||||||||||| ||||||||||||||||||||||| ||||| || ||||| |||| Sbjct: 47 gagcagccatggcttcatcggtggccgccgcggcgagcacattcctgggcacccgcctgg 106 Query: 134 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcgg 182 ||||||||||||| |||||||||||||||||||| |||||||| ||||| Sbjct: 107 cggacccggcgccacagaacgggcgcatcgtggcccggttcgggttcgg 155 Score = 69.9 bits (35), Expect = 4e-09 Identities = 56/63 (88%) Strand = Plus / Plus Query: 229 gaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggcacgctcgtc 288 |||||||||||||||||||||||||| ||||||||| ||||| |||||| |||| ||| Sbjct: 214 gaccggccgctgtggttccccggcgccgtggcgcccgactacctggacggctcgctggtc 273 Query: 289 ggc 291 ||| Sbjct: 274 ggc 276
>emb|Z50801.1|ZMCABCP29 Z.mays mRNA for chlorophyll a/b-binding protein CP29 Length = 1162 Score = 145 bits (73), Expect = 9e-32 Identities = 97/105 (92%) Strand = Plus / Plus Query: 78 agccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctggcgga 137 |||||||||||| ||||||||||||||||||||||| ||||| || ||||| |||||||| Sbjct: 7 agccatggcttcatcggtggccgccgcggcgagcacattcctgggcacccgcctggcgga 66 Query: 138 cccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcgg 182 ||||||||| |||||||||||||||||||| |||||||| ||||| Sbjct: 67 cccggcgccacagaacgggcgcatcgtggcccggttcgggttcgg 111 Score = 69.9 bits (35), Expect = 4e-09 Identities = 56/63 (88%) Strand = Plus / Plus Query: 229 gaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggcacgctcgtc 288 |||||||||||||||||||||||||| ||||||||| ||||| |||||| |||| ||| Sbjct: 170 gaccggccgctgtggttccccggcgccgtggcgcccgactacctggacggctcgctggtc 229 Query: 289 ggc 291 ||| Sbjct: 230 ggc 232
>emb|Y10786.1|SSY10786 S.stapfianus pSD.76 mRNA Length = 332 Score = 139 bits (70), Expect = 6e-30 Identities = 85/90 (94%) Strand = Plus / Plus Query: 100 gccgcggcgagcacgttcctcgggacccggctggcggacccggcgccgcagaacgggcgc 159 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 54 gccgcggcgagcacgttcctcgggacccgcctggcggacccggcgccccagaacgggcgc 113 Query: 160 atcgtggcgcggttcggcttcggcaagaag 189 ||||||||||||||| |||||||||||| Sbjct: 114 atcgtggcgcggttcccgttcggcaagaag 143 Score = 79.8 bits (40), Expect = 4e-12 Identities = 49/52 (94%) Strand = Plus / Plus Query: 227 ccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacgg 278 |||||||||||||||||||||| |||||| |||||||||| ||||||||||| Sbjct: 187 ccgaccggccgctgtggttcccgggcgcgaaggcgcccgactacctcgacgg 238
>ref|XM_507368.1| PREDICTED Oryza sativa (japonica cultivar-group), P0567H04.15 mRNA Length = 1156 Score = 131 bits (66), Expect = 1e-27 Identities = 99/110 (90%) Strand = Plus / Plus Query: 74 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 37 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 96 Query: 134 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcggc 183 |||||||||||||||||| |||| | ||||||||| ||||||| |||||| Sbjct: 97 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcggc 146 Score = 63.9 bits (32), Expect = 3e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 220 ccgaccaccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggc 279 ||||| || ||| ||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct: 192 ccgacgacggacaggccgctgtggttccccggcgcggtggcgccggactacctggacggg 251 Query: 280 acgctcgtcggc 291 ||||||||||| Sbjct: 252 tcgctcgtcggc 263
>ref|XM_478692.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1152 Score = 131 bits (66), Expect = 1e-27 Identities = 99/110 (90%) Strand = Plus / Plus Query: 74 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 32 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 91 Query: 134 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcggc 183 |||||||||||||||||| |||| | ||||||||| ||||||| |||||| Sbjct: 92 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcggc 141 Score = 63.9 bits (32), Expect = 3e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 220 ccgaccaccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggc 279 ||||| || ||| ||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct: 187 ccgacgacggacaggccgctgtggttccccggcgcggtggcgccggactacctggacggg 246 Query: 280 acgctcgtcggc 291 ||||||||||| Sbjct: 247 tcgctcgtcggc 258
>ref|XM_507367.1| PREDICTED Oryza sativa (japonica cultivar-group), P0567H04.15 mRNA Length = 1162 Score = 131 bits (66), Expect = 1e-27 Identities = 99/110 (90%) Strand = Plus / Plus Query: 74 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 39 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 98 Query: 134 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcggc 183 |||||||||||||||||| |||| | ||||||||| ||||||| |||||| Sbjct: 99 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcggc 148 Score = 63.9 bits (32), Expect = 3e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 220 ccgaccaccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggc 279 ||||| || ||| ||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct: 194 ccgacgacggacaggccgctgtggttccccggcgcggtggcgccggactacctggacggg 253 Query: 280 acgctcgtcggc 291 ||||||||||| Sbjct: 254 tcgctcgtcggc 265
>ref|XM_507366.1| PREDICTED Oryza sativa (japonica cultivar-group), P0567H04.15 mRNA Length = 1183 Score = 131 bits (66), Expect = 1e-27 Identities = 99/110 (90%) Strand = Plus / Plus Query: 74 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 39 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 98 Query: 134 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcggc 183 |||||||||||||||||| |||| | ||||||||| ||||||| |||||| Sbjct: 99 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcggc 148 Score = 63.9 bits (32), Expect = 3e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 220 ccgaccaccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggc 279 ||||| || ||| ||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct: 194 ccgacgacggacaggccgctgtggttccccggcgcggtggcgccggactacctggacggg 253 Query: 280 acgctcgtcggc 291 ||||||||||| Sbjct: 254 tcgctcgtcggc 265
>ref|XM_506405.2| PREDICTED Oryza sativa (japonica cultivar-group), P0567H04.15 mRNA Length = 1221 Score = 131 bits (66), Expect = 1e-27 Identities = 99/110 (90%) Strand = Plus / Plus Query: 74 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 53 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 112 Query: 134 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcggc 183 |||||||||||||||||| |||| | ||||||||| ||||||| |||||| Sbjct: 113 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcggc 162 Score = 63.9 bits (32), Expect = 3e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 220 ccgaccaccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggc 279 ||||| || ||| ||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct: 208 ccgacgacggacaggccgctgtggttccccggcgcggtggcgccggactacctggacggg 267 Query: 280 acgctcgtcggc 291 ||||||||||| Sbjct: 268 tcgctcgtcggc 279
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 131 bits (66), Expect = 1e-27 Identities = 99/110 (90%) Strand = Plus / Minus Query: 74 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 22264304 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 22264245 Query: 134 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcggc 183 |||||||||||||||||| |||| | ||||||||| ||||||| |||||| Sbjct: 22264244 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcggc 22264195 Score = 63.9 bits (32), Expect = 3e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 220 ccgaccaccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggc 279 ||||| || ||| ||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct: 22264149 ccgacgacggacaggccgctgtggttccccggcgcggtggcgccggactacctggacggg 22264090 Query: 280 acgctcgtcggc 291 ||||||||||| Sbjct: 22264089 tcgctcgtcggc 22264078
>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0567H04 Length = 181420 Score = 131 bits (66), Expect = 1e-27 Identities = 99/110 (90%) Strand = Plus / Minus Query: 74 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 69550 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 69491 Query: 134 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcggc 183 |||||||||||||||||| |||| | ||||||||| ||||||| |||||| Sbjct: 69490 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcggc 69441 Score = 63.9 bits (32), Expect = 3e-07 Identities = 62/72 (86%) Strand = Plus / Minus Query: 220 ccgaccaccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggc 279 ||||| || ||| ||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct: 69395 ccgacgacggacaggccgctgtggttccccggcgcggtggcgccggactacctggacggg 69336 Query: 280 acgctcgtcggc 291 ||||||||||| Sbjct: 69335 tcgctcgtcggc 69324
>dbj|AK119534.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-B02, full insert sequence Length = 1234 Score = 131 bits (66), Expect = 1e-27 Identities = 99/110 (90%) Strand = Plus / Plus Query: 74 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 39 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 98 Query: 134 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcggc 183 |||||||||||||||||| |||| | ||||||||| ||||||| |||||| Sbjct: 99 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcggc 148 Score = 63.9 bits (32), Expect = 3e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 220 ccgaccaccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggc 279 ||||| || ||| ||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct: 194 ccgacgacggacaggccgctgtggttccccggcgcggtggcgccggactacctggacggg 253 Query: 280 acgctcgtcggc 291 ||||||||||| Sbjct: 254 tcgctcgtcggc 265
>dbj|AK104619.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-F11, full insert sequence Length = 1152 Score = 131 bits (66), Expect = 1e-27 Identities = 99/110 (90%) Strand = Plus / Plus Query: 74 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 32 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 91 Query: 134 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcggc 183 |||||||||||||||||| |||| | ||||||||| ||||||| |||||| Sbjct: 92 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcggc 141 Score = 63.9 bits (32), Expect = 3e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 220 ccgaccaccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggc 279 ||||| || ||| ||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct: 187 ccgacgacggacaggccgctgtggttccccggcgcggtggcgccggactacctggacggg 246 Query: 280 acgctcgtcggc 291 ||||||||||| Sbjct: 247 tcgctcgtcggc 258
>dbj|AK104309.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D03, full insert sequence Length = 1169 Score = 131 bits (66), Expect = 1e-27 Identities = 99/110 (90%) Strand = Plus / Plus Query: 74 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 46 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 105 Query: 134 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcggc 183 |||||||||||||||||| |||| | ||||||||| ||||||| |||||| Sbjct: 106 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcggc 155 Score = 63.9 bits (32), Expect = 3e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 220 ccgaccaccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggc 279 ||||| || ||| ||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct: 201 ccgacgacggacaggccgctgtggttccccggcgcggtggcgccggactacctggacggg 260 Query: 280 acgctcgtcggc 291 ||||||||||| Sbjct: 261 tcgctcgtcggc 272
>dbj|AK103924.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-C12, full insert sequence Length = 1183 Score = 131 bits (66), Expect = 1e-27 Identities = 99/110 (90%) Strand = Plus / Plus Query: 74 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 39 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 98 Query: 134 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcggc 183 |||||||||||||||||| |||| | ||||||||| ||||||| |||||| Sbjct: 99 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcggc 148 Score = 63.9 bits (32), Expect = 3e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 220 ccgaccaccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggc 279 ||||| || ||| ||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct: 194 ccgacgacggacaggccgctgtggttccccggcgcggtggcgccggactacctggacggg 253 Query: 280 acgctcgtcggc 291 ||||||||||| Sbjct: 254 tcgctcgtcggc 265
>dbj|AK098992.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098H13, full insert sequence Length = 1156 Score = 131 bits (66), Expect = 1e-27 Identities = 99/110 (90%) Strand = Plus / Plus Query: 74 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 37 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 96 Query: 134 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcggc 183 |||||||||||||||||| |||| | ||||||||| ||||||| |||||| Sbjct: 97 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcggc 146 Score = 63.9 bits (32), Expect = 3e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 220 ccgaccaccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggc 279 ||||| || ||| ||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct: 192 ccgacgacggacaggccgctgtggttccccggcgcggtggcgccggactacctggacggg 251 Query: 280 acgctcgtcggc 291 ||||||||||| Sbjct: 252 tcgctcgtcggc 263
>dbj|AK058293.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-F01, full insert sequence Length = 1221 Score = 131 bits (66), Expect = 1e-27 Identities = 99/110 (90%) Strand = Plus / Plus Query: 74 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 53 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 112 Query: 134 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcggc 183 |||||||||||||||||| |||| | ||||||||| ||||||| |||||| Sbjct: 113 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcggc 162 Score = 63.9 bits (32), Expect = 3e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 220 ccgaccaccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggc 279 ||||| || ||| ||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct: 208 ccgacgacggacaggccgctgtggttccccggcgcggtggcgccggactacctggacggg 267 Query: 280 acgctcgtcggc 291 ||||||||||| Sbjct: 268 tcgctcgtcggc 279
>gb|AF058796.1|AF058796 Oryza sativa chlorophyll a/b-binding protein (RCABP69) mRNA, complete cds Length = 1178 Score = 131 bits (66), Expect = 1e-27 Identities = 99/110 (90%) Strand = Plus / Plus Query: 74 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 37 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 96 Query: 134 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcggc 183 |||||||||||||||||| |||| | ||||||||| ||||||| |||||| Sbjct: 97 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcggc 146 Score = 63.9 bits (32), Expect = 3e-07 Identities = 62/72 (86%) Strand = Plus / Plus Query: 220 ccgaccaccgaccggccgctgtggttccccggcgcgcaggcgcccgagtacctcgacggc 279 ||||| || ||| ||||||||||||||||||||||| |||||| || ||||| ||||| Sbjct: 192 ccgacgacggacaggccgctgtggttccccggcgcggtggcgccggactacctggacggg 251 Query: 280 acgctcgtcggc 291 ||||||||||| Sbjct: 252 tcgctcgtcggc 263
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 44.1 bits (22), Expect = 0.24 Identities = 25/26 (96%) Strand = Plus / Minus Query: 88 tcgtcggtggccgccgcggcgagcac 113 ||||||||||||| |||||||||||| Sbjct: 2881901 tcgtcggtggccgacgcggcgagcac 2881876
>ref|XM_960770.1| Encephalitozoon cuniculi GB-M1 hypothetical protein (ECU01_0290) partial mRNA Length = 447 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 32 cgcacgcaaaggccgaggagga 53 |||||||||||||||||||||| Sbjct: 71 cgcacgcaaaggccgaggagga 92
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 44.1 bits (22), Expect = 0.24 Identities = 28/30 (93%) Strand = Plus / Minus Query: 82 atggcttcgtcggtggccgccgcggcgagc 111 |||||||||||| ||||||| ||||||||| Sbjct: 1698526 atggcttcgtcgttggccgcggcggcgagc 1698497
>emb|AL391737.2|CNS06C8G chromosome I of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 209982 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Minus Query: 32 cgcacgcaaaggccgaggagga 53 |||||||||||||||||||||| Sbjct: 43884 cgcacgcaaaggccgaggagga 43863
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 269 acctcgacggcacgctcgtcg 289 ||||||||||||||||||||| Sbjct: 1426896 acctcgacggcacgctcgtcg 1426916
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Minus Query: 204 gaaggccaaggcgcccccgac 224 ||||||||||||||||||||| Sbjct: 10560 gaaggccaaggcgcccccgac 10540 Score = 40.1 bits (20), Expect = 3.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 183 caagaagaaggccccgccgaagaaggcc 210 |||||||||||| ||| ||||||||||| Sbjct: 3381360 caagaagaaggctccggcgaagaaggcc 3381387
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 0.96 Identities = 24/25 (96%) Strand = Plus / Plus Query: 96 ggccgccgcggcgagcacgttcctc 120 ||||||||||||| ||||||||||| Sbjct: 15345302 ggccgccgcggcgcgcacgttcctc 15345326
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Minus Query: 153 cgggcgcatcgtggcgcggtt 173 ||||||||||||||||||||| Sbjct: 5324906 cgggcgcatcgtggcgcggtt 5324886 Score = 42.1 bits (21), Expect = 0.96 Identities = 24/25 (96%) Strand = Plus / Plus Query: 252 cgcgcaggcgcccgagtacctcgac 276 |||||||||||||||| |||||||| Sbjct: 4490470 cgcgcaggcgcccgagcacctcgac 4490494
>gb|AF333038.2| Streptomyces viridochromogenes Avilamycin A biosynthetic gene cluster, complete sequence Length = 59816 Score = 42.1 bits (21), Expect = 0.96 Identities = 24/25 (96%) Strand = Plus / Plus Query: 99 cgccgcggcgagcacgttcctcggg 123 |||||||||||||| |||||||||| Sbjct: 49515 cgccgcggcgagcatgttcctcggg 49539
>emb|Y13918.1|PABY13918 Pseudomonas aeruginosa phage phi CTX DNA, complete genome Length = 35559 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 gcttcggcaagaagaaggccc 196 ||||||||||||||||||||| Sbjct: 28419 gcttcggcaagaagaaggccc 28439
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 42.1 bits (21), Expect = 0.96 Identities = 24/25 (96%) Strand = Plus / Minus Query: 252 cgcgcaggcgcccgagtacctcgac 276 ||||||||||||| ||||||||||| Sbjct: 1798284 cgcgcaggcgccccagtacctcgac 1798260
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 191 aggccccgccgaagaaggcca 211 ||||||||||||||||||||| Sbjct: 2058063 aggccccgccgaagaaggcca 2058083
>emb|AL662972.3|OSJN00173 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063G07, complete sequence Length = 157622 Score = 42.1 bits (21), Expect = 0.96 Identities = 24/25 (96%) Strand = Plus / Plus Query: 96 ggccgccgcggcgagcacgttcctc 120 ||||||||||||| ||||||||||| Sbjct: 34186 ggccgccgcggcgcgcacgttcctc 34210
>gb|L27117.1|TRBH1C9AAA Trypanosoma cruzi histone H1 (H1.C9) mRNA, complete cds Length = 307 Score = 42.1 bits (21), Expect = 0.96 Identities = 24/25 (96%) Strand = Plus / Plus Query: 186 gaagaaggccccgccgaagaaggcc 210 |||||||||| |||||||||||||| Sbjct: 59 gaagaaggcctcgccgaagaaggcc 83 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 187 aagaaggccccgccgaagaaggcc 210 ||||||||| |||||||||||||| Sbjct: 45 aagaaggcctcgccgaagaaggcc 68
>gb|L27120.1|TRBH1C6AAA Trypanosoma cruzi histone H1 (H1.C6) mRNA, 3' end Length = 502 Score = 42.1 bits (21), Expect = 0.96 Identities = 24/25 (96%) Strand = Plus / Plus Query: 186 gaagaaggccccgccgaagaaggcc 210 |||||||||| |||||||||||||| Sbjct: 38 gaagaaggcctcgccgaagaaggcc 62 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 187 aagaaggccccgccgaagaaggcc 210 ||||||||| |||||||||||||| Sbjct: 24 aagaaggcctcgccgaagaaggcc 47
>dbj|AB008550.1| Pseudomonas aeruginosa phage phi CTX, complete genome sequence Length = 35580 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 176 gcttcggcaagaagaaggccc 196 ||||||||||||||||||||| Sbjct: 28419 gcttcggcaagaagaaggccc 28439
>ref|XM_550078.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2497 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 gctgtggttccccggcgcgc 256 |||||||||||||||||||| Sbjct: 159 gctgtggttccccggcgcgc 140
>ref|XM_493818.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1737 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 gtcggtggccgccgcggcgagcac 113 ||||| |||||||||||||||||| Sbjct: 1678 gtcggcggccgccgcggcgagcac 1701
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 ccccgccgaagaaggccaag 213 |||||||||||||||||||| Sbjct: 1966435 ccccgccgaagaaggccaag 1966454
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 gtcggtggccgccgcggcgagcac 113 ||||| |||||||||||||||||| Sbjct: 1687675 gtcggcggccgccgcggcgagcac 1687698
>emb|Z78205.1|BHT1UL Bovine herpesvirus type 1 UL22-35 genes Length = 37000 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 cggtggccgccgcggcgagc 111 |||||||||||||||||||| Sbjct: 3373 cggtggccgccgcggcgagc 3392
>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome Length = 135301 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 cggtggccgccgcggcgagc 111 |||||||||||||||||||| Sbjct: 34173 cggtggccgccgcggcgagc 34192
>ref|XM_801854.1| Trypanosoma cruzi strain CL Brener histone h1 (Tc00.1047053510225.10) partial mRNA Length = 435 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 gaagaaggccccgccgaagaaggc 209 |||||||||| ||||||||||||| Sbjct: 225 gaagaaggccgcgccgaagaaggc 248 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 187 aagaaggccccgccgaagaaggcc 210 ||||||||| |||||||||||||| Sbjct: 211 aagaaggcctcgccgaagaaggcc 234
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 164 tggcgcggttcggcttcggcaaga 187 ||||||| |||||||||||||||| Sbjct: 976065 tggcgcgattcggcttcggcaaga 976042
>gb|BC041922.1| Homo sapiens fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific), mRNA (cDNA clone IMAGE:5300179) Length = 1835 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 ggcggacccggcgccgcagaacgg 155 ||||||||||||||||| |||||| Sbjct: 841 ggcggacccggcgccgcggaacgg 864
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 ccccggcgcgcaggcgcccg 265 |||||||||||||||||||| Sbjct: 878907 ccccggcgcgcaggcgcccg 878888
>gb|AY046273.1| Trypanosoma cruzi histone H1 gene, partial cds Length = 249 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 gaagaaggccccgccgaagaaggc 209 |||||||||| ||||||||||||| Sbjct: 39 gaagaaggccgcgccgaagaaggc 62 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 187 aagaaggccccgccgaagaaggcc 210 ||||||||| |||||||||||||| Sbjct: 25 aagaaggcctcgccgaagaaggcc 48
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 gtcggtggccgccgcggcgagcac 113 ||||| |||||||||||||||||| Sbjct: 1687673 gtcggcggccgccgcggcgagcac 1687696
>gb|AF305082.1|AF305082 Homo sapiens alpha(1,3)-fucosyltransferase IV gene, promoter sequence, 5'UTR, and partial CDS Length = 3094 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 132 ggcggacccggcgccgcagaacgg 155 ||||||||||||||||| |||||| Sbjct: 2525 ggcggacccggcgccgcggaacgg 2502
>dbj|AK110783.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-C04, full insert sequence Length = 1949 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 gtcggtggccgccgcggcgagcac 113 ||||| |||||||||||||||||| Sbjct: 1806 gtcggcggccgccgcggcgagcac 1829
>dbj|AK103044.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117F21, full insert sequence Length = 3638 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 gctgtggttccccggcgcgc 256 |||||||||||||||||||| Sbjct: 580 gctgtggttccccggcgcgc 561
>dbj|AK063999.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-124-F06, full insert sequence Length = 2497 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 237 gctgtggttccccggcgcgc 256 |||||||||||||||||||| Sbjct: 159 gctgtggttccccggcgcgc 140
>dbj|AP000943.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-867G2, complete sequence Length = 192299 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 132 ggcggacccggcgccgcagaacgg 155 ||||||||||||||||| |||||| Sbjct: 47205 ggcggacccggcgccgcggaacgg 47182
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 ccccggcgcgcaggcgcccg 265 |||||||||||||||||||| Sbjct: 910277 ccccggcgcgcaggcgcccg 910258
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 tggccgccgcggcgagcacg 114 |||||||||||||||||||| Sbjct: 2557863 tggccgccgcggcgagcacg 2557844
>dbj|AB041774.1| Homo sapiens gene, 5' flanking region Length = 1098 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 132 ggcggacccggcgccgcagaacgg 155 ||||||||||||||||| |||||| Sbjct: 580 ggcggacccggcgccgcggaacgg 557
>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, clone:P0043E01 Length = 154128 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 90 gtcggtggccgccgcggcgagcac 113 ||||| |||||||||||||||||| Sbjct: 100138 gtcggcggccgccgcggcgagcac 100161 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,794,228 Number of Sequences: 3902068 Number of extensions: 1794228 Number of successful extensions: 42497 Number of sequences better than 10.0: 54 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 41201 Number of HSP's gapped (non-prelim): 1296 length of query: 291 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 269 effective length of database: 17,147,199,772 effective search space: 4612596738668 effective search space used: 4612596738668 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
