>CB21_SINAL (P13851) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 266

 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 29/51 (56%), Positives = 33/51 (64%), Gaps = 6/51 (11%)
 Frame = +3

Query: 72  MAATTMALSSPA-----MKLA-GASYVLGGGRITMRKTXXXXXXXXXPWYG 206
           MAA+TMALSSPA     +KL+ GAS V G GR+TMRKT         PWYG
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPGASEVFGTGRVTMRKTVKPTGPSGSPWYG 51

>CB2B_LYCES (P07370) Chlorophyll a-b binding protein 1B, chloroplast precursor|
           (LHCII type I CAB-1B) (LHCP)
          Length = 265

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 27/51 (52%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRKTXXXXXXXXXPWYG 206
           MAA TMALSSP     A+KL+  AS + G GRITMRK          PWYG
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPWYG 51

>CB22_SOYBN (P09755) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 256

 Score = 46.2 bits (108), Expect = 2e-05
 Identities = 26/50 (52%), Positives = 31/50 (62%), Gaps = 5/50 (10%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLAGASYVLGGGRITMRKTXXXXXXXXXPWYG 206
           MAA+TMALSS      AMKLA ++  LG GR++MRKT         PWYG
Sbjct: 1   MAASTMALSSSSLAGQAMKLAPSTPELGVGRVSMRKTAPKTVSSGSPWYG 50

>CB22_ORYSA (P12331) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (LHCP)
          Length = 261

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 25/47 (53%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +3

Query: 72  MAATTMALSSPAMKLAGASYVLGGGRITMRKTXX--XXXXXXXPWYG 206
           MAA TMALSSPA+    A+ V G GRITMRK+           PWYG
Sbjct: 1   MAAATMALSSPALAGKAAAKVFGEGRITMRKSAAKPKPAASGSPWYG 47

>CB22_ARATH (P04778) Chlorophyll a-b binding protein 2, chloroplast precursor|
           (LHCII type I CAB-2) (CAB-140) (LHCP)
          Length = 267

 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 29/52 (55%), Positives = 33/52 (63%), Gaps = 7/52 (13%)
 Frame = +3

Query: 72  MAATTMALSSPA-----MKLA-GASYVLGGGRITMRKTXXX-XXXXXXPWYG 206
           MAA+TMALSSPA     +KL+  AS VLG GR+TMRKT          PWYG
Sbjct: 1   MAASTMALSSPAFAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYG 52

>CB22_TOBAC (P27493) Chlorophyll a-b binding protein 21, chloroplast precursor|
           (LHCII type I CAB-21) (LHCP)
          Length = 265

 Score = 44.3 bits (103), Expect = 9e-05
 Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 6/51 (11%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRKTXXXXXXXXXPWYG 206
           MAA TMALSSP     A+KL+  A  + G GR++MRKT         PWYG
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSAPEITGNGRVSMRKTVAKPVASSSPWYG 51

>CB21_ARATH (P04777) Chlorophyll a-b binding protein 165/180, chloroplast|
           precursor (LHCII type I CAB-165/180)
          Length = 267

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 27/52 (51%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
 Frame = +3

Query: 72  MAATTMALSSPAMK------LAGASYVLGGGRITMRKTXXX-XXXXXXPWYG 206
           MAA+TMALSSPA           AS VLG GR+TMRKT          PWYG
Sbjct: 1   MAASTMALSSPAFAGKAVNLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYG 52

>CB2A_SPIOL (P12333) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP)
          Length = 267

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 27/53 (50%), Positives = 32/53 (60%), Gaps = 8/53 (15%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLAG-ASYVLGGGRITMRKTXX--XXXXXXXPWYG 206
           MA++TMALSSP     A+KL   AS ++G GRITMRKT           PWYG
Sbjct: 1   MASSTMALSSPSLAGKAVKLGPTASEIIGEGRITMRKTAGKPKTVQSSSPWYG 53

>CB24_TOBAC (P27495) Chlorophyll a-b binding protein 40, chloroplast precursor|
           (LHCII type I CAB-40) (LHCP)
          Length = 267

 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 25/53 (47%), Positives = 32/53 (60%), Gaps = 8/53 (15%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRKTX--XXXXXXXXPWYG 206
           MAA+TMALSSP     A+KL+  +S + G G++TMRKT           PWYG
Sbjct: 1   MAASTMALSSPSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKTVSSGSPWYG 53

>CB2C_LYCES (P14275) Chlorophyll a-b binding protein 1C, chloroplast precursor|
           (LHCII type I CAB-1C) (LHCP) (Fragments)
          Length = 265

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 25/49 (51%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRKTXXXXXXXXXPW 200
           MAA TMALSSP     A+KL+  AS + G GRITMRK          PW
Sbjct: 1   MAAATMALSSPSFAGQAVKLSPSASEISGNGRITMRKAVAKSAPSSSPW 49

>CB21_ORYSA (P12330) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 265

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 25/51 (49%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
 Frame = +3

Query: 72  MAATTMALSSPAMKLAG---ASYVLGGGRITMRKTXXX---XXXXXXPWYG 206
           MAA TMALSSP M  A    +S + G  RITMRKT            PWYG
Sbjct: 1   MAAATMALSSPVMARAAPSTSSALFGEARITMRKTAAKPKPAASSGSPWYG 51

>CB23_APIGR (P92919) Chlorophyll a-b binding protein, chloroplast precursor|
           (Allergen Api g 3)
          Length = 264

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 25/51 (49%), Positives = 32/51 (62%), Gaps = 6/51 (11%)
 Frame = +3

Query: 72  MAATTMALSSPAM-----KLA-GASYVLGGGRITMRKTXXXXXXXXXPWYG 206
           MAA+TMALSSPA+     K+A  +S + G GR++MRKT         PWYG
Sbjct: 1   MAASTMALSSPALAGKAVKVAPSSSELFGNGRVSMRKT-VKAPVSDSPWYG 50

>CB23_PETSP (P04781) Chlorophyll a-b binding protein 22R, chloroplast precursor|
           (LHCII type I CAB-22R) (LHCP)
          Length = 267

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 8/53 (15%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLAGASY-VLGGGRITMRKTXXXX--XXXXXPWYG 206
           MAATTMALSS      A+KL+ +S  + G G++TMRKT           PWYG
Sbjct: 1   MAATTMALSSSSFAGKAVKLSSSSSEITGNGKVTMRKTVTKAKPASSSSPWYG 53

>CB21_TOBAC (P27492) Chlorophyll a-b binding protein 16, chloroplast precursor|
           (LHCII type I CAB-16) (LHCP)
          Length = 266

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 7/52 (13%)
 Frame = +3

Query: 72  MAATTMALSSP----AMKLA-GASYVLGGGRITMRKTXXXX--XXXXXPWYG 206
           MAA+T ALSSP    A+KL+  +S V G G++TMRKT           PWYG
Sbjct: 1   MAASTTALSSPFAGKAVKLSPSSSEVTGNGKVTMRKTASKAKPVSSGSPWYG 52

>CB25_NICPL (P12470) Chlorophyll a-b binding protein E, chloroplast precursor|
           (LHCII type I CAB-E) (LHCP)
          Length = 266

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 7/52 (13%)
 Frame = +3

Query: 72  MAATTMALSSP----AMKLA-GASYVLGGGRITMRKTXXXX--XXXXXPWYG 206
           MAA+T ALSSP    A+KL+  +S V G G++TMRKT           PWYG
Sbjct: 1   MAASTTALSSPFAGKAVKLSPSSSEVTGNGKVTMRKTANKAKPVSSGSPWYG 52

>CB23_SOYBN (P09756) Chlorophyll a-b binding protein 3, chloroplast precursor|
           (LHCII type I CAB-3) (LHCP)
          Length = 263

 Score = 39.3 bits (90), Expect = 0.003
 Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
 Frame = +3

Query: 75  AATTMALSSPAMKLAGASYVLGG-----GRITMRKTXXXXXXXXXPWYG 206
           AA++MALSSP+  LAG +  LG      GR++MRKT         PWYG
Sbjct: 3   AASSMALSSPS--LAGKAVKLGPSAPEVGRVSMRKTVTKQVSSGSPWYG 49

>CB48_MAIZE (Q00827) Chlorophyll a-b binding protein 48, chloroplast precursor|
           (LHCII type I CAB-48) (LHCP)
          Length = 264

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 24/50 (48%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
 Frame = +3

Query: 72  MAATTMALSSPAM---KLAGASYVLGGGRITMRKTXX--XXXXXXXPWYG 206
           MAA TMA++S A+     AG   V G GRITMRKT           PWYG
Sbjct: 1   MAAATMAITSRALVGKPAAGTRDVFGEGRITMRKTAAKPKPARSGSPWYG 50

>CB23_NICPL (P12469) Chlorophyll a-b binding protein C, chloroplast precursor|
           (LHCII type I CAB-C) (LHCP)
          Length = 267

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 8/53 (15%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRKTXXXX--XXXXXPWYG 206
           MAA+TMALSS      A+KL+  +S + G G++TMRKT           PWYG
Sbjct: 1   MAASTMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTASKAKPVSSSSPWYG 53

>CB2G_LYCES (P07369) Chlorophyll a-b binding protein 3C, chloroplast precursor|
           (LHCII type I CAB-3C) (LHCP)
          Length = 267

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRKTXXXX--XXXXXPWYG 206
           MA +TMALSS      A+KL+  +S + G GR+TMRKT           PWYG
Sbjct: 1   MATSTMALSSSTFAGKAVKLSPSSSEITGNGRVTMRKTATKAKPASSGSPWYG 53

>CB25_TOBAC (P27496) Chlorophyll a-b binding protein 50, chloroplast precursor|
           (LHCII type I CAB-50) (LHCP)
          Length = 267

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRKTXXXX--XXXXXPWYG 206
           MAA TMALSS      A+KL+  +S + G G++TMRKT           PWYG
Sbjct: 1   MAAATMALSSSSFAGKAVKLSPSSSEITGNGKVTMRKTVTKAKPLSSGSPWYG 53

>CB25_PETSP (P04783) Chlorophyll a-b binding protein 91R, chloroplast precursor|
           (LHCII type I CAB-91R) (LHCP)
          Length = 267

 Score = 37.7 bits (86), Expect = 0.008
 Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRKTXXXX--XXXXXPWYG 206
           MAA TMALSSP     A+K +  +S + G G+ TMRKT           PWYG
Sbjct: 1   MAAATMALSSPSFAGKAVKFSPSSSEITGNGKATMRKTVTKAKPVSSGSPWYG 53

>CB21_MAIZE (P12329) Chlorophyll a-b binding protein 1, chloroplast precursor|
           (LHCII type I CAB-1) (LHCP)
          Length = 262

 Score = 37.4 bits (85), Expect = 0.011
 Identities = 25/50 (50%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
 Frame = +3

Query: 72  MAATTMALSSPAMKLAGASYVLGG---GRITMRKTXX--XXXXXXXPWYG 206
           MAA+TMA+SS AM  AG    +G    GRITMRKT           PWYG
Sbjct: 1   MAASTMAISSTAM--AGTPIKVGSFGEGRITMRKTVGKPKVAASGSPWYG 48

>CB2A_LYCES (P14274) Chlorophyll a-b binding protein 1A, chloroplast precursor|
           (LHCII type I CAB-1A) (LHCP) (Fragments)
          Length = 265

 Score = 37.0 bits (84), Expect = 0.014
 Identities = 24/49 (48%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRKTXXXXXXXXXPW 200
           MAA  MALSSP     A+KL+  AS   G GRITMRK          PW
Sbjct: 1   MAAAAMALSSPSFAGQAVKLSPSASENSGNGRITMRKAVAKSAPSSSPW 49

>CB28_PEA (P27490) Chlorophyll a-b binding protein 8, chloroplast precursor|
           (LHCII type I CAB-8)
          Length = 268

 Score = 37.0 bits (84), Expect = 0.014
 Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 9/54 (16%)
 Frame = +3

Query: 72  MAATTMALSSPAM-------KLAGASYVLGGGRITMRK--TXXXXXXXXXPWYG 206
           MAA++MALSSP +           +S  LGG R TMRK  T         PWYG
Sbjct: 1   MAASSMALSSPTLTGKPVETSANPSSQELGGARFTMRKSATTKKVASSGSPWYG 54

>CB24_PETSP (P04782) Chlorophyll a-b binding protein 25, chloroplast precursor|
           (LHCII type I CAB-25) (LHCP)
          Length = 266

 Score = 36.6 bits (83), Expect = 0.018
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLAGASYVLGGGRITMRKTXXXX--XXXXXPWYG 206
           MAA TMA+SS      A+ +  +S + G G+ TMRKT           PWYG
Sbjct: 1   MAAATMAISSSSFAGKAVNVPSSSQITGNGKATMRKTVTKAKPVSSGSPWYG 52

>CB27_TOBAC (P27491) Chlorophyll a-b binding protein 7, chloroplast precursor|
           (LHCII type I CAB-7) (LHCP)
          Length = 267

 Score = 35.8 bits (81), Expect = 0.031
 Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRKTXXXX--XXXXXPWYG 206
           M A+TMALSSP     A+KL+  +S + G G+  MRKT           PWYG
Sbjct: 1   MTASTMALSSPSFAGNAVKLSPSSSEITGNGKAIMRKTVTKAKPVSSGSPWYG 53

>CB21_PETSP (P04779) Chlorophyll a-b binding protein 13, chloroplast precursor|
           (LHCII type I CAB-13) (LHCP)
          Length = 266

 Score = 35.4 bits (80), Expect = 0.041
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLAGASYVLGGGRITMRKTXXXX--XXXXXPWYG 206
           MAA TMALSS      A+ +  +S +   G++TMRKT           PWYG
Sbjct: 1   MAAATMALSSSSFAGKAVNVPSSSEITRNGKVTMRKTVTKAKPVSSGSPWYG 52

>CB22_PETSP (P04780) Chlorophyll a-b binding protein 22L, chloroplast precursor|
           (LHCII type I CAB-22L) (LHCP)
          Length = 267

 Score = 35.0 bits (79), Expect = 0.054
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 8/53 (15%)
 Frame = +3

Query: 72  MAATTMALSSPA-----MKLA-GASYVLGGGRITMRKTXXXX--XXXXXPWYG 206
           MAA TMALSS       +KL+  +S + G G+ TMRKT           PWYG
Sbjct: 1   MAAATMALSSSTFAGKVVKLSPSSSEITGNGKATMRKTATKAKPVSSGSPWYG 53

>CB2F_LYCES (P14277) Chlorophyll a-b binding protein 3B, chloroplast precursor|
           (LHCII type I CAB-3B) (LHCP) (Fragments)
          Length = 267

 Score = 34.3 bits (77), Expect = 0.091
 Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 8/51 (15%)
 Frame = +3

Query: 72  MAATTMALSSP-----AMKLA-GASYVLGGGRITMRKTXX--XXXXXXXPW 200
           MAA+TMALSS      A+KL+  +S + G GRITMRKT           PW
Sbjct: 1   MAASTMALSSSTFAGKAVKLSPSSSEISGNGRITMRKTAAKPKPASSGSPW 51

>CB2E_LYCES (P14276) Chlorophyll a-b binding protein 3A, chloroplast precursor|
           (LHCII type I CAB-3A) (LHCP) (Fragments)
          Length = 267

 Score = 34.3 bits (77), Expect = 0.091
 Identities = 24/51 (47%), Positives = 28/51 (54%), Gaps = 8/51 (15%)
 Frame = +3

Query: 72  MAATTMALSSPA-----MKLA-GASYVLGGGRITMRKTXX--XXXXXXXPW 200
           MAA+TMALSS       +KLA  +S + G GRITMRKT           PW
Sbjct: 1   MAASTMALSSSTFAGKTVKLAPSSSEITGNGRITMRKTAAKPKPASSGSPW 51

>CB21_SOYBN (P12471) Chlorophyll a-b binding protein, chloroplast precursor|
           (LHCII type I CAB) (LHCP) (Fragment)
          Length = 245

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 135 LGGGRITMRKTXXXXXXXXXPWYG 206
           LG GR++MRKT         PWYG
Sbjct: 8   LGVGRVSMRKTASKTVSSGSPWYG 31

>CB21_CUCSA (P08221) Chlorophyll a-b binding protein of LHCII type I,|
           chloroplast precursor (CAB) (LHCP) (Fragment)
          Length = 255

 Score = 31.6 bits (70), Expect = 0.59
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 93  LSSPAMKLA-GASYVLGGGRITMRKTXXXXXXXXXPWYG 206
           L+  A+KL+  A  + G  + TMRKT         PWYG
Sbjct: 3   LAGQAVKLSPNAPEIQGNAKFTMRKTASKSVSSGSPWYG 41

>RTP3_MOUSE (Q5QGU6) Receptor-transporting protein 3 (Transmembrane protein 7)|
          Length = 474

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 16/61 (26%)
 Frame = -1

Query: 145 PPPRTYEAPASFIAGEESAMVVAAIAC---------CRME-------QSKLLMCGCCCD* 14
           PP  +Y  P S      S+ V+  I+          C++E       QS+   CG CC+ 
Sbjct: 377 PPTSSYVPPTSSYVPPTSSSVIVPISSSWRLPENTICQVERNSHIHPQSQSSCCGACCES 436

Query: 13  W 11
           W
Sbjct: 437 W 437


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.307    0.128    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,013,006
Number of Sequences: 219361
Number of extensions: 204394
Number of successful extensions: 455
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 80,573,946
effective HSP length: 44
effective length of database: 70,922,062
effective search space used: 1702129488
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)