ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet60d02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC011740.7| Homo sapiens BAC clone RP11-106G13 from 2, comple... 42 0.39
2gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 0.39
3gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 42 0.39
4gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 1.6
5gb|CP000032.1| Silicibacter pomeroyi DSS-3 plasmid megaplasmid, ... 40 1.6
6ref|XM_478049.1| Oryza sativa (japonica cultivar-group), mRNA 40 1.6
7gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 1.6
8gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hilde... 40 1.6
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.6
10dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 1.6
11dbj|AP004347.5| Oryza sativa (japonica cultivar-group) genomic D... 40 1.6
12dbj|AP003806.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.6
13ref|XM_481385.1| Oryza sativa (japonica cultivar-group), mRNA 38 6.2
14ref|XM_466643.1| Oryza sativa (japonica cultivar-group), mRNA 38 6.2
15gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 38 6.2
16ref|XM_427815.1| PREDICTED: Gallus gallus similar to zonadhesin ... 38 6.2
17gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 38 6.2
18ref|NM_172668.2| Mus musculus low density lipoprotein receptor-r... 38 6.2
19ref|XM_580417.2| PREDICTED: Bos taurus similar to Low-density li... 38 6.2
20gb|AF247637.1| Mus musculus LDLR dan mRNA, complete cds 38 6.2
21ref|XM_540458.2| PREDICTED: Canis familiaris similar to Septin-9... 38 6.2
22emb|BX842581.1| Mycobacterium tuberculosis H37Rv complete genome... 38 6.2
23emb|BX248344.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 38 6.2
24emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete ... 38 6.2
25emb|AJ414609.1|MTU414609 Mycobacterium tuberculosis smc gene 38 6.2
26gb|CP000249.1| Frankia sp. CcI3, complete genome 38 6.2
27dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
28dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
29ref|NM_031322.1| Rattus norvegicus low density lipoprotein recep... 38 6.2
30dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 38 6.2
31dbj|AP005305.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
32dbj|AP005843.2| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
33dbj|AB107017.1| Homo sapiens gene for dopamine receptor D4, part... 38 6.2
34dbj|AP006438.3| Oryza sativa (japonica cultivar-group) genomic D... 38 6.2
35dbj|AB073317.1| Rattus norvegicus LRP13 mRNA for LDL receptor-re... 38 6.2
36dbj|AK129224.1| Mus musculus mRNA for mKIAA0816 protein 38 6.2
37dbj|AK109261.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 6.2
38dbj|AK058698.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 6.2
39gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 38 6.2
40emb|AJ845083.2| Streptomyces tenjimariensis istamycin biosynthes... 38 6.2
41emb|AL691489.20| Mouse DNA sequence from clone RP23-176N9 on chr... 38 6.2
42dbj|AB011533.1| Rattus norvegicus mRNA for MEGF7, partial cds 38 6.2 
>gb|AC011740.7| Homo sapiens BAC clone RP11-106G13 from 2, complete sequence
          Length = 168991

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 53    ggcgccggggcgcgggcgcctgcca 77
             |||||||||||| ||||||||||||
Sbjct: 70953 ggcgccggggcgggggcgcctgcca 70977
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 52      cggcgccggggcgcgggcgcc 72
               |||||||||||||||||||||
Sbjct: 1920175 cggcgccggggcgcgggcgcc 1920195



 Score = 38.2 bits (19), Expect = 6.2
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 49      tgtcggcgccggggcgcgggcgc 71
               ||||||||||||||||| |||||
Sbjct: 4571234 tgtcggcgccggggcgcaggcgc 4571212
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 42.1 bits (21), Expect = 0.39
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 57      ccggggcgcgggcgcctgcca 77
               |||||||||||||||||||||
Sbjct: 1153330 ccggggcgcgggcgcctgcca 1153350
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 54      gcgccggggcgcgggcgcct 73
               ||||||||||||||||||||
Sbjct: 1643121 gcgccggggcgcgggcgcct 1643140



 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     gcgccggggcgcgggcgcct 73
              ||||||||||||||||||||
Sbjct: 868083 gcgccggggcgcgggcgcct 868102
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>gb|CP000032.1| Silicibacter pomeroyi DSS-3 plasmid megaplasmid, complete sequence
          Length = 491611

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 57     ccggggcgcgggcgcctgcc 76
              ||||||||||||||||||||
Sbjct: 357686 ccggggcgcgggcgcctgcc 357705
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>ref|XM_478049.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1305

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 112 cgccgacgacgtcctcgccg 131
           ||||||||||||||||||||
Sbjct: 792 cgccgacgacgtcctcgccg 773
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 110     cgcgccgacgacgtcctcgc 129
               ||||||||||||||||||||
Sbjct: 3758942 cgcgccgacgacgtcctcgc 3758961
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>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome
          Length = 3570858

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 104     cttcgccgcgccgacgacgt 123
               ||||||||||||||||||||
Sbjct: 1203684 cttcgccgcgccgacgacgt 1203703
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 112      cgccgacgacgtcctcgccg 131
                ||||||||||||||||||||
Sbjct: 16880975 cgccgacgacgtcctcgccg 16880956
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 108    gccgcgccgacgacgtcctcgccg 131
              |||||||||||||||||| |||||
Sbjct: 116493 gccgcgccgacgacgtccgcgccg 116470
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>dbj|AP004347.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0675B10
          Length = 136229

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   cgccgacgacgtcctcgccg 131
             ||||||||||||||||||||
Sbjct: 56729 cgccgacgacgtcctcgccg 56710
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>dbj|AP003806.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1103_E04
          Length = 111354

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   cgccgacgacgtcctcgccg 131
             ||||||||||||||||||||
Sbjct: 97542 cgccgacgacgtcctcgccg 97523
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>ref|XM_481385.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1008

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 110 cgcgccgacgacgtcctcg 128
           |||||||||||||||||||
Sbjct: 238 cgcgccgacgacgtcctcg 256
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>ref|XM_466643.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1124

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 50  gtcggcgccggggcgcggg 68
           |||||||||||||||||||
Sbjct: 663 gtcggcgccggggcgcggg 681
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 103     ccttcgccgcgccgacgac 121
               |||||||||||||||||||
Sbjct: 3232090 ccttcgccgcgccgacgac 3232072
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>ref|XM_427815.1| PREDICTED: Gallus gallus similar to zonadhesin isoform 3
           (LOC430259), partial mRNA
          Length = 821

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 28  gcaacggccgatggcatcc 46
           |||||||||||||||||||
Sbjct: 743 gcaacggccgatggcatcc 761
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 50      gtcggcgccggggcgcggg 68
               |||||||||||||||||||
Sbjct: 1091635 gtcggcgccggggcgcggg 1091653
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>ref|NM_172668.2| Mus musculus low density lipoprotein receptor-related protein 4
            (Lrp4), mRNA
          Length = 7737

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 32   cggccgatggcatccactg 50
            |||||||||||||||||||
Sbjct: 3407 cggccgatggcatccactg 3389
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>ref|XM_580417.2| PREDICTED: Bos taurus similar to Low-density lipoprotein
            receptor-related protein 4 precursor (Multiple epidermal
            growth factor-like domains 7) (LOC504317), mRNA
          Length = 6403

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 32   cggccgatggcatccactg 50
            |||||||||||||||||||
Sbjct: 3860 cggccgatggcatccactg 3842
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>gb|AF247637.1| Mus musculus LDLR dan mRNA, complete cds
          Length = 7737

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 32   cggccgatggcatccactg 50
            |||||||||||||||||||
Sbjct: 3407 cggccgatggcatccactg 3389
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>ref|XM_540458.2| PREDICTED: Canis familiaris similar to Septin-9 (MLL septin-like
           fusion protein) (MLL septin-like fusion protein MSF-A)
           (Ovarian/Breast septin) (Ov/Br septin) (Septin D1)
           (LOC483339), mRNA
          Length = 1809

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 57  ccggggcgcgggcgcctgc 75
           |||||||||||||||||||
Sbjct: 840 ccggggcgcgggcgcctgc 822
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>emb|BX842581.1| Mycobacterium tuberculosis H37Rv complete genome; segment 10/13
          Length = 348676

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 103    ccttcgccgcgccgacgac 121
              |||||||||||||||||||
Sbjct: 118732 ccttcgccgcgccgacgac 118714
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>emb|BX248344.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             11/14
          Length = 318050

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 103   ccttcgccgcgccgacgac 121
             |||||||||||||||||||
Sbjct: 69397 ccttcgccgcgccgacgac 69379
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>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29
          Length = 309050

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 112    cgccgacgacgtcctcgcc 130
              |||||||||||||||||||
Sbjct: 282140 cgccgacgacgtcctcgcc 282158
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>emb|AJ414609.1|MTU414609 Mycobacterium tuberculosis smc gene
          Length = 3618

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 103 ccttcgccgcgccgacgac 121
           |||||||||||||||||||
Sbjct: 38  ccttcgccgcgccgacgac 56
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 77      accggcgggaggctgtcgg 95
               |||||||||||||||||||
Sbjct: 3786097 accggcgggaggctgtcgg 3786115
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 110      cgcgccgacgacgtcctcg 128
                |||||||||||||||||||
Sbjct: 12059929 cgcgccgacgacgtcctcg 12059947
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 50       gtcggcgccggggcgcggg 68
                |||||||||||||||||||
Sbjct: 23849045 gtcggcgccggggcgcggg 23849027
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>ref|NM_031322.1| Rattus norvegicus low density lipoprotein receptor-related protein 4
            (Lrp4), mRNA
          Length = 7784

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 32   cggccgatggcatccactg 50
            |||||||||||||||||||
Sbjct: 3420 cggccgatggcatccactg 3402
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 106     tcgccgcgccgacgacgtc 124
               |||||||||||||||||||
Sbjct: 4214513 tcgccgcgccgacgacgtc 4214531
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>dbj|AP005305.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0024C06
          Length = 177529

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 110    cgcgccgacgacgtcctcg 128
              |||||||||||||||||||
Sbjct: 111424 cgcgccgacgacgtcctcg 111442
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>dbj|AP005843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0024C16
          Length = 137779

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 110   cgcgccgacgacgtcctcg 128
             |||||||||||||||||||
Sbjct: 57063 cgcgccgacgacgtcctcg 57081
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>dbj|AB107017.1| Homo sapiens gene for dopamine receptor D4, partial cds
          Length = 217

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 53 ggcgccggggcgcgggcgc 71
          |||||||||||||||||||
Sbjct: 39 ggcgccggggcgcgggcgc 21
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>dbj|AP006438.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0030C08
          Length = 163423

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 50    gtcggcgccggggcgcggg 68
             |||||||||||||||||||
Sbjct: 70711 gtcggcgccggggcgcggg 70693
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>dbj|AB073317.1| Rattus norvegicus LRP13 mRNA for LDL receptor-related protein 13,
            complete cds
          Length = 7784

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 32   cggccgatggcatccactg 50
            |||||||||||||||||||
Sbjct: 3420 cggccgatggcatccactg 3402
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>dbj|AK129224.1| Mus musculus mRNA for mKIAA0816 protein
          Length = 5802

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 32   cggccgatggcatccactg 50
            |||||||||||||||||||
Sbjct: 1368 cggccgatggcatccactg 1350
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>dbj|AK109261.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-185-B01, full
           insert sequence
          Length = 1124

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 50  gtcggcgccggggcgcggg 68
           |||||||||||||||||||
Sbjct: 663 gtcggcgccggggcgcggg 681
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>dbj|AK058698.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-C01, full
           insert sequence
          Length = 1315

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 110 cgcgccgacgacgtcctcg 128
           |||||||||||||||||||
Sbjct: 303 cgcgccgacgacgtcctcg 321
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 106     tcgccgcgccgacgacgtc 124
               |||||||||||||||||||
Sbjct: 1101710 tcgccgcgccgacgacgtc 1101692
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>emb|AJ845083.2| Streptomyces tenjimariensis istamycin biosynthesis cluster, strain ATCC
             31603
          Length = 67904

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 113   gccgacgacgtcctcgccg 131
             |||||||||||||||||||
Sbjct: 64112 gccgacgacgtcctcgccg 64130
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>emb|AL691489.20| Mouse DNA sequence from clone RP23-176N9 on chromosome 2, complete
             sequence
          Length = 194864

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 32    cggccgatggcatccactg 50
             |||||||||||||||||||
Sbjct: 32624 cggccgatggcatccactg 32606
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>dbj|AB011533.1| Rattus norvegicus mRNA for MEGF7, partial cds
          Length = 5950

 Score = 38.2 bits (19), Expect = 6.2
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 32   cggccgatggcatccactg 50
            |||||||||||||||||||
Sbjct: 1586 cggccgatggcatccactg 1568


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 921,235
Number of Sequences: 3902068
Number of extensions: 921235
Number of successful extensions: 87216
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84888
Number of HSP's gapped (non-prelim): 2328
length of query: 131
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 110
effective length of database: 17,151,101,840
effective search space: 1886621202400
effective search space used: 1886621202400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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