>UMP6_ARATH (Q9SX77) Unknown protein At1g47420, mitochondrial precursor|
          Length = 257

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 25/42 (59%), Positives = 31/42 (73%)
 Frame = +2

Query: 143 MGTLGRAIYTVGKWVRGTGQAMDRLGSTIQGGLRAEEQVSRH 268
           MGTLGRAI+TVG  +RGT QA  R+GS +QG    E+ +SRH
Sbjct: 1   MGTLGRAIHTVGNRIRGTAQAQARVGSLLQGSHHIEKHLSRH 42

>BICD2_MOUSE (Q921C5) Cytoskeleton-like bicaudal D protein homolog 2|
          Length = 820

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -2

Query: 181 LAHRVDRAPEGP-HLSPAPARSVPAPLGARRRQPQARWGLTA 59
           LA  V RA  G    SP+P+ S+P+PL   RR+P   + L A
Sbjct: 587 LATEVGRADGGTGDNSPSPSSSLPSPLSDPRREPMNIYNLIA 628

>SYL_SYNPX (Q7U6T1) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 857

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -3

Query: 231 WMVDPRRSMACPVPRTHLPT---V*IARPRVPIFLP 133
           W++  +R   CP+P  H P+   V + R  +P+ LP
Sbjct: 424 WLISRQRYWGCPIPIIHCPSCGAVPVPREDLPVVLP 459

>HCFC1_MESAU (P51611) Host cell factor (HCF) (HCF-1) (C1 factor) (VP16 accessory|
           protein) (VCAF) [Contains: HCF N-terminal chain 1; HCF
           N-terminal chain 2; HCF N-terminal chain 3; HCF
           N-terminal chain 4; HCF N-terminal chain 5; HCF
           N-terminal chain 6; HCF
          Length = 2090

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -2

Query: 193 ATDPLAHRVDRAPEGPHLSPAPARSVPAPLGARRRQPQARWGLT 62
           AT P  + V   P  P  SPAPA + PA       QP  + G+T
Sbjct: 409 ATSPTPNPVPSVPANPPKSPAPAAAAPAV------QPLTQVGIT 446

>HCFC1_MOUSE (Q61191) Host cell factor (HCF) (HCF-1) (C1 factor) [Contains: HCF|
           N-terminal chain 1; HCF N-terminal chain 2; HCF
           N-terminal chain 3; HCF N-terminal chain 4; HCF
           N-terminal chain 5; HCF N-terminal chain 6; HCF
           C-terminal chain 1; HCF C-termi
          Length = 2045

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -2

Query: 193 ATDPLAHRVDRAPEGPHLSPAPARSVPAPLGARRRQPQARWGLT 62
           AT P  + V   P  P  SPAPA + PA       QP  + G+T
Sbjct: 409 ATSPTPNPVPSVPANPPKSPAPAAAAPAV------QPLTQVGIT 446

>HCFC1_HUMAN (P51610) Host cell factor (HCF) (HCF-1) (C1 factor) (VP16 accessory|
           protein) (VCAF) (CFF) [Contains: HCF N-terminal chain 1;
           HCF N-terminal chain 2; HCF N-terminal chain 3; HCF
           N-terminal chain 4; HCF N-terminal chain 5; HCF
           N-terminal chain
          Length = 2035

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = -2

Query: 193 ATDPLAHRVDRAPEGPHLSPAPARSVPAPLGARRRQPQARWGLT 62
           AT P  + V   P  P  SPAPA + PA       QP  + G+T
Sbjct: 409 ATSPTPNPVPSVPANPPKSPAPAAAAPAV------QPLTQVGIT 446

>STK23_MOUSE (Q9Z0G2) Serine/threonine-protein kinase 23 (EC 2.7.11.1)|
           (Muscle-specific serine kinase 1) (MSSK-1)
          Length = 565

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 157 PEGPHLSPAPARSVPAPLGARRRQPQAR 74
           PEG    P+PA S P P G R   P ++
Sbjct: 320 PEGTRAGPSPASSSPVPGGERSLSPSSQ 347

>BICD2_HUMAN (Q8TD16) Cytoskeleton-like bicaudal D protein homolog 2|
          Length = 824

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 181 LAHRVDRAPEGP-HLSPAPARSVPAPLGARRRQPQARWGLTA 59
           LA    RA  G    SP+P  S+P+PL   RR+P   + L A
Sbjct: 591 LAPEAGRADGGTGDSSPSPGSSLPSPLSDPRREPMNIYNLIA 632

>DNAA_RHOPA (Q6NDV3) Chromosomal replication initiator protein dnaA|
          Length = 472

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 184 PLAHRVDRAPEGPHLSPAPARSVPAPLGARR 92
           P  +RVD     P     PA+ VPAP+ +RR
Sbjct: 72  PEVNRVDLTVRSPVRCATPAKEVPAPVESRR 102

>ZP1_RAT (O54766) Zona pellucida sperm-binding protein 1 precursor (Zona|
           pellucida glycoprotein 1) (Zp-1)
          Length = 617

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 145 HLSPAPARSVPAPLGARRRQPQARWGLTAS 56
           H +PAP  S P P+G     PQ++WG   S
Sbjct: 181 HPTPAPPSSEPGPVGP--TVPQSQWGTLGS 208

>NHRF2_HUMAN (Q15599) Na(+)/H(+) exchange regulatory cofactor NHE-RF2 (NHERF-2)|
           (Tyrosine kinase activator protein 1) (TKA-1)
           (SRY-interacting protein 1) (SIP-1) (Solute carrier
           family 9 isoform A3 regulatory factor 2) (NHE3 kinase A
           regulatory protein E3
          Length = 337

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 15/34 (44%), Positives = 17/34 (50%)
 Frame = -2

Query: 205 GLPRATDPLAHRVDRAPEGPHLSPAPARSVPAPL 104
           GLP A DP   + D A  G H S A  + V  PL
Sbjct: 111 GLPPAHDPWEPKPDWAHTGSHSSEAGKKDVSGPL 144

>AVRD1_PSESH (Q9F3T6) Effector protein AvrPphD|
          Length = 710

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 67  NPTSPAAAGGEPLTEQGPSAQE 132
           N T+P  +GG+PL   GP AQ+
Sbjct: 10  NITTPPISGGQPLDAVGPQAQQ 31

>RYR1_PIG (P16960) Ryanodine receptor 1 (Skeletal muscle-type ryanodine|
            receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release
            channel)
          Length = 5035

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 153  SGARSTRWASGSVARGRPWTASD 221
            +G R  RW  GS   GRPW + D
Sbjct: 1125 NGHRGQRWHLGSELFGRPWQSGD 1147

>RL1_HHV2H (P28283) Neurovirulence factor RL1 (Neurovirulence factor ICP34.5)|
          Length = 261

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 193 ATDPLAHRVDRAPEGPHLSPAPARSVPAPLGARRRQPQ 80
           A  P +    +APE PH   APA + P P   + R PQ
Sbjct: 90  ANSPPSEGGGKAPEAPH--AAPAAACPPPPPRKERGPQ 125

>AVRD1_PSESG (Q8RK06) Effector protein AvrPphDPgy|
          Length = 698

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 67  NPTSPAAAGGEPLTEQGPSAQE 132
           N T+P  +GG+PL   GP AQ+
Sbjct: 10  NITTPPISGGQPLDAVGPQAQQ 31

>RYR1_RABIT (P11716) Ryanodine receptor 1 (Skeletal muscle-type ryanodine|
            receptor) (RyR1) (RYR-1) (Skeletal muscle calcium release
            channel)
          Length = 5037

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +3

Query: 153  SGARSTRWASGSVARGRPWTASD 221
            +G R  RW  GS   GRPW + D
Sbjct: 1125 NGHRGQRWHLGSEPFGRPWQSGD 1147

>VT2_MYXVL (P29825) Tumor necrosis factor soluble receptor precursor (Protein|
           T2)
          Length = 326

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -1

Query: 191 HGPTCPPCRSRARGSPSFSRSC 126
           H P C  CR R  G  S S+SC
Sbjct: 75  HAPACVSCRGRCTGHLSESQSC 96


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.305    0.130    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,189,243
Number of Sequences: 219361
Number of extensions: 508301
Number of successful extensions: 1709
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1704
length of database: 80,573,946
effective HSP length: 65
effective length of database: 66,315,481
effective search space used: 1591571544
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)