ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet60b08 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY103995.1| Zea mays PCO102677 mRNA sequence Length = 1225 Score = 153 bits (77), Expect = 2e-34 Identities = 101/109 (92%) Strand = Plus / Plus Query: 60 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 119 |||||||||||||||| ||||||||||||||||||||||| ||||| || ||||| |||| Sbjct: 47 gagcagccatggcttcatcggtggccgccgcggcgagcacattcctgggcacccgcctgg 106 Query: 120 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcgg 168 ||||||||||||| |||||||||||||||||||| |||||||| ||||| Sbjct: 107 cggacccggcgccacagaacgggcgcatcgtggcccggttcgggttcgg 155
>emb|Z50801.1|ZMCABCP29 Z.mays mRNA for chlorophyll a/b-binding protein CP29 Length = 1162 Score = 145 bits (73), Expect = 5e-32 Identities = 97/105 (92%) Strand = Plus / Plus Query: 64 agccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctggcgga 123 |||||||||||| ||||||||||||||||||||||| ||||| || ||||| |||||||| Sbjct: 7 agccatggcttcatcggtggccgccgcggcgagcacattcctgggcacccgcctggcgga 66 Query: 124 cccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcgg 168 ||||||||| |||||||||||||||||||| |||||||| ||||| Sbjct: 67 cccggcgccacagaacgggcgcatcgtggcccggttcgggttcgg 111
>emb|Y10786.1|SSY10786 S.stapfianus pSD.76 mRNA Length = 332 Score = 133 bits (67), Expect = 2e-28 Identities = 73/75 (97%) Strand = Plus / Plus Query: 86 gccgcggcgagcacgttcctcgggacccggctggcggacccggcgccgcagaacgggcgc 145 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct: 54 gccgcggcgagcacgttcctcgggacccgcctggcggacccggcgccccagaacgggcgc 113 Query: 146 atcgtggcgcggttc 160 ||||||||||||||| Sbjct: 114 atcgtggcgcggttc 128
>ref|XM_507368.1| PREDICTED Oryza sativa (japonica cultivar-group), P0567H04.15 mRNA Length = 1156 Score = 129 bits (65), Expect = 3e-27 Identities = 98/109 (89%) Strand = Plus / Plus Query: 60 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 119 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 37 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 96 Query: 120 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcgg 168 |||||||||||||||||| |||| | ||||||||| ||||||| ||||| Sbjct: 97 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcgg 145
>ref|XM_478692.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1152 Score = 129 bits (65), Expect = 3e-27 Identities = 98/109 (89%) Strand = Plus / Plus Query: 60 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 119 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 32 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 91 Query: 120 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcgg 168 |||||||||||||||||| |||| | ||||||||| ||||||| ||||| Sbjct: 92 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcgg 140
>ref|XM_507367.1| PREDICTED Oryza sativa (japonica cultivar-group), P0567H04.15 mRNA Length = 1162 Score = 129 bits (65), Expect = 3e-27 Identities = 98/109 (89%) Strand = Plus / Plus Query: 60 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 119 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 39 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 98 Query: 120 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcgg 168 |||||||||||||||||| |||| | ||||||||| ||||||| ||||| Sbjct: 99 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcgg 147
>ref|XM_507366.1| PREDICTED Oryza sativa (japonica cultivar-group), P0567H04.15 mRNA Length = 1183 Score = 129 bits (65), Expect = 3e-27 Identities = 98/109 (89%) Strand = Plus / Plus Query: 60 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 119 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 39 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 98 Query: 120 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcgg 168 |||||||||||||||||| |||| | ||||||||| ||||||| ||||| Sbjct: 99 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcgg 147
>ref|XM_506405.2| PREDICTED Oryza sativa (japonica cultivar-group), P0567H04.15 mRNA Length = 1221 Score = 129 bits (65), Expect = 3e-27 Identities = 98/109 (89%) Strand = Plus / Plus Query: 60 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 119 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 53 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 112 Query: 120 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcgg 168 |||||||||||||||||| |||| | ||||||||| ||||||| ||||| Sbjct: 113 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcgg 161
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 129 bits (65), Expect = 3e-27 Identities = 98/109 (89%) Strand = Plus / Minus Query: 60 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 119 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 22264304 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 22264245 Query: 120 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcgg 168 |||||||||||||||||| |||| | ||||||||| ||||||| ||||| Sbjct: 22264244 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcgg 22264196
>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0567H04 Length = 181420 Score = 129 bits (65), Expect = 3e-27 Identities = 98/109 (89%) Strand = Plus / Minus Query: 60 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 119 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 69550 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 69491 Query: 120 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcgg 168 |||||||||||||||||| |||| | ||||||||| ||||||| ||||| Sbjct: 69490 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcgg 69442
>dbj|AK119534.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-B02, full insert sequence Length = 1234 Score = 129 bits (65), Expect = 3e-27 Identities = 98/109 (89%) Strand = Plus / Plus Query: 60 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 119 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 39 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 98 Query: 120 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcgg 168 |||||||||||||||||| |||| | ||||||||| ||||||| ||||| Sbjct: 99 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcgg 147
>dbj|AK104619.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-F11, full insert sequence Length = 1152 Score = 129 bits (65), Expect = 3e-27 Identities = 98/109 (89%) Strand = Plus / Plus Query: 60 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 119 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 32 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 91 Query: 120 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcgg 168 |||||||||||||||||| |||| | ||||||||| ||||||| ||||| Sbjct: 92 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcgg 140
>dbj|AK104309.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D03, full insert sequence Length = 1169 Score = 129 bits (65), Expect = 3e-27 Identities = 98/109 (89%) Strand = Plus / Plus Query: 60 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 119 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 46 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 105 Query: 120 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcgg 168 |||||||||||||||||| |||| | ||||||||| ||||||| ||||| Sbjct: 106 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcgg 154
>dbj|AK103924.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-C12, full insert sequence Length = 1183 Score = 129 bits (65), Expect = 3e-27 Identities = 98/109 (89%) Strand = Plus / Plus Query: 60 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 119 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 39 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 98 Query: 120 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcgg 168 |||||||||||||||||| |||| | ||||||||| ||||||| ||||| Sbjct: 99 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcgg 147
>dbj|AK098992.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098H13, full insert sequence Length = 1156 Score = 129 bits (65), Expect = 3e-27 Identities = 98/109 (89%) Strand = Plus / Plus Query: 60 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 119 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 37 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 96 Query: 120 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcgg 168 |||||||||||||||||| |||| | ||||||||| ||||||| ||||| Sbjct: 97 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcgg 145
>dbj|AK058293.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-F01, full insert sequence Length = 1221 Score = 129 bits (65), Expect = 3e-27 Identities = 98/109 (89%) Strand = Plus / Plus Query: 60 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 119 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 53 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 112 Query: 120 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcgg 168 |||||||||||||||||| |||| | ||||||||| ||||||| ||||| Sbjct: 113 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcgg 161
>gb|AF058796.1|AF058796 Oryza sativa chlorophyll a/b-binding protein (RCABP69) mRNA, complete cds Length = 1178 Score = 129 bits (65), Expect = 3e-27 Identities = 98/109 (89%) Strand = Plus / Plus Query: 60 gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 119 ||||||||||||| ||||||||||| || ||||||||||||||||| ||||| |||||| Sbjct: 37 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 96 Query: 120 cggacccggcgccgcagaacgggcgcatcgtggcgcggttcggcttcgg 168 |||||||||||||||||| |||| | ||||||||| ||||||| ||||| Sbjct: 97 cggacccggcgccgcagagcgggaggatcgtggcgaggttcgggttcgg 145
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 44.1 bits (22), Expect = 0.13 Identities = 25/26 (96%) Strand = Plus / Minus Query: 74 tcgtcggtggccgccgcggcgagcac 99 ||||||||||||| |||||||||||| Sbjct: 2881901 tcgtcggtggccgacgcggcgagcac 2881876
>ref|XM_960770.1| Encephalitozoon cuniculi GB-M1 hypothetical protein (ECU01_0290) partial mRNA Length = 447 Score = 44.1 bits (22), Expect = 0.13 Identities = 22/22 (100%) Strand = Plus / Plus Query: 18 cgcacgcaaaggccgaggagga 39 |||||||||||||||||||||| Sbjct: 71 cgcacgcaaaggccgaggagga 92
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 44.1 bits (22), Expect = 0.13 Identities = 28/30 (93%) Strand = Plus / Minus Query: 68 atggcttcgtcggtggccgccgcggcgagc 97 |||||||||||| ||||||| ||||||||| Sbjct: 1698526 atggcttcgtcgttggccgcggcggcgagc 1698497
>emb|AL391737.2|CNS06C8G chromosome I of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 209982 Score = 44.1 bits (22), Expect = 0.13 Identities = 22/22 (100%) Strand = Plus / Minus Query: 18 cgcacgcaaaggccgaggagga 39 |||||||||||||||||||||| Sbjct: 43884 cgcacgcaaaggccgaggagga 43863
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 0.52 Identities = 24/25 (96%) Strand = Plus / Plus Query: 82 ggccgccgcggcgagcacgttcctc 106 ||||||||||||| ||||||||||| Sbjct: 15345302 ggccgccgcggcgcgcacgttcctc 15345326
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 0.52 Identities = 21/21 (100%) Strand = Plus / Minus Query: 139 cgggcgcatcgtggcgcggtt 159 ||||||||||||||||||||| Sbjct: 5324906 cgggcgcatcgtggcgcggtt 5324886 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 115 gctggcggacccggcgccgcaga 137 |||||||||||||||| |||||| Sbjct: 900744 gctggcggacccggcgacgcaga 900766
>gb|AF333038.2| Streptomyces viridochromogenes Avilamycin A biosynthetic gene cluster, complete sequence Length = 59816 Score = 42.1 bits (21), Expect = 0.52 Identities = 24/25 (96%) Strand = Plus / Plus Query: 85 cgccgcggcgagcacgttcctcggg 109 |||||||||||||| |||||||||| Sbjct: 49515 cgccgcggcgagcatgttcctcggg 49539
>emb|AL662972.3|OSJN00173 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063G07, complete sequence Length = 157622 Score = 42.1 bits (21), Expect = 0.52 Identities = 24/25 (96%) Strand = Plus / Plus Query: 82 ggccgccgcggcgagcacgttcctc 106 ||||||||||||| ||||||||||| Sbjct: 34186 ggccgccgcggcgcgcacgttcctc 34210
>ref|XM_493818.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1737 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 76 gtcggtggccgccgcggcgagcac 99 ||||| |||||||||||||||||| Sbjct: 1678 gtcggcggccgccgcggcgagcac 1701
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 76 gtcggtggccgccgcggcgagcac 99 ||||| |||||||||||||||||| Sbjct: 1687675 gtcggcggccgccgcggcgagcac 1687698 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 ggtggccgccgcggcgagc 97 ||||||||||||||||||| Sbjct: 29654646 ggtggccgccgcggcgagc 29654628
>emb|Z78205.1|BHT1UL Bovine herpesvirus type 1 UL22-35 genes Length = 37000 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 cggtggccgccgcggcgagc 97 |||||||||||||||||||| Sbjct: 3373 cggtggccgccgcggcgagc 3392
>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome Length = 135301 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 cggtggccgccgcggcgagc 97 |||||||||||||||||||| Sbjct: 34173 cggtggccgccgcggcgagc 34192
>gb|BC041922.1| Homo sapiens fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific), mRNA (cDNA clone IMAGE:5300179) Length = 1835 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 118 ggcggacccggcgccgcagaacgg 141 ||||||||||||||||| |||||| Sbjct: 841 ggcggacccggcgccgcggaacgg 864
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 76 gtcggtggccgccgcggcgagcac 99 ||||| |||||||||||||||||| Sbjct: 1687673 gtcggcggccgccgcggcgagcac 1687696 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 79 ggtggccgccgcggcgagc 97 ||||||||||||||||||| Sbjct: 29746068 ggtggccgccgcggcgagc 29746050
>gb|AF305082.1|AF305082 Homo sapiens alpha(1,3)-fucosyltransferase IV gene, promoter sequence, 5'UTR, and partial CDS Length = 3094 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 ggcggacccggcgccgcagaacgg 141 ||||||||||||||||| |||||| Sbjct: 2525 ggcggacccggcgccgcggaacgg 2502
>dbj|AK110783.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-C04, full insert sequence Length = 1949 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 76 gtcggtggccgccgcggcgagcac 99 ||||| |||||||||||||||||| Sbjct: 1806 gtcggcggccgccgcggcgagcac 1829
>dbj|AP000943.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-867G2, complete sequence Length = 192299 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 ggcggacccggcgccgcagaacgg 141 ||||||||||||||||| |||||| Sbjct: 47205 ggcggacccggcgccgcggaacgg 47182
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 2.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 tggccgccgcggcgagcacg 100 |||||||||||||||||||| Sbjct: 2557863 tggccgccgcggcgagcacg 2557844
>dbj|AB041774.1| Homo sapiens gene, 5' flanking region Length = 1098 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 118 ggcggacccggcgccgcagaacgg 141 ||||||||||||||||| |||||| Sbjct: 580 ggcggacccggcgccgcggaacgg 557
>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, clone:P0043E01 Length = 154128 Score = 40.1 bits (20), Expect = 2.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 76 gtcggtggccgccgcggcgagcac 99 ||||| |||||||||||||||||| Sbjct: 100138 gtcggcggccgccgcggcgagcac 100161
>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness locus region Length = 129099 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 111 cccggctggcggacccggcgccg 133 ||||||||| ||||||||||||| Sbjct: 74162 cccggctggaggacccggcgccg 74184
>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence Length = 1130447 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 75 cgtcggtggccgccgcggc 93 ||||||||||||||||||| Sbjct: 903893 cgtcggtggccgccgcggc 903911
>gb|AC116368.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0061D06, complete sequence Length = 172126 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 ggccgccgcggcgagcacg 100 ||||||||||||||||||| Sbjct: 75100 ggccgccgcggcgagcacg 75118
>gb|AC103550.13| Oryza sativa chromosome 3 BAC OSJNBa0079G12 genomic sequence, complete sequence Length = 163712 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 79 ggtggccgccgcggcgagc 97 ||||||||||||||||||| Sbjct: 116731 ggtggccgccgcggcgagc 116749
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 ggccgccgcggcgagcacg 100 ||||||||||||||||||| Sbjct: 2262667 ggccgccgcggcgagcacg 2262685
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 73 ttcgtcggtggccgccgcg 91 ||||||||||||||||||| Sbjct: 1584374 ttcgtcggtggccgccgcg 1584392
>ref|XM_843078.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0476) partial mRNA Length = 5088 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 75 cgtcggtggccgccgcggc 93 ||||||||||||||||||| Sbjct: 4558 cgtcggtggccgccgcggc 4540
>gb|AY263398.1| Streptomyces vinaceus strain ATCC 11861 viomycin biosynthetic gene cluster, complete sequence Length = 36401 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 ggccgccgcggcgagcacg 100 ||||||||||||||||||| Sbjct: 22465 ggccgccgcggcgagcacg 22483
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 145 catcgtggcgcggttcggc 163 ||||||||||||||||||| Sbjct: 26395 catcgtggcgcggttcggc 26377
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 77 tcggtggccgccgcggcgagcac 99 |||||||||||| |||||||||| Sbjct: 2961177 tcggtggccgccccggcgagcac 2961199 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 77 tcggtggccgccgcggcga 95 ||||||||||||||||||| Sbjct: 626934 tcggtggccgccgcggcga 626952
>emb|X72382.1|RCNIFR3 R.capsulatus nifR3 DNA Length = 5847 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 141 ggcgcatcgtggcgcggttcggc 163 ||||||| ||||||||||||||| Sbjct: 1694 ggcgcatggtggcgcggttcggc 1716
>gb|AE008794.1| Salmonella typhimurium LT2, section 98 of 220 of the complete genome Length = 26591 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 ccatggcttcgtcggtggc 84 ||||||||||||||||||| Sbjct: 19988 ccatggcttcgtcggtggc 20006
>gb|DQ021386.1| Cetostoma sp. AD-2005 28S ribosomal RNA gene, partial sequence Length = 118 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 ggccgccgcggcgagcacg 100 ||||||||||||||||||| Sbjct: 70 ggccgccgcggcgagcacg 88
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 ggccgccgcggcgagcacg 100 ||||||||||||||||||| Sbjct: 424039 ggccgccgcggcgagcacg 424057
>emb|AL627273.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 9/20 Length = 250050 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 ccatggcttcgtcggtggc 84 ||||||||||||||||||| Sbjct: 125783 ccatggcttcgtcggtggc 125801
>emb|AJ505006.1|POL505006 Sorangium cellulosum spiG gene (partial), spiH gene, spiI gene, spiJ gene, spiK gene, spiL gene and spiZ gene Length = 48000 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Plus Query: 85 cgccgcggcgagcacgttcctcg 107 ||||||||||| ||||||||||| Sbjct: 1987 cgccgcggcgaacacgttcctcg 2009
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 78 cggtggccgccgcggcgagcacg 100 ||||||||||||| ||||||||| Sbjct: 1792793 cggtggccgccgctgcgagcacg 1792771
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 82 ggccgccgcggcgagcacg 100 ||||||||||||||||||| Sbjct: 1564367 ggccgccgcggcgagcacg 1564349
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 82 ggccgccgcggcgagcacg 100 ||||||||||||||||||| Sbjct: 9674577 ggccgccgcggcgagcacg 9674559
>gb|AC007608.7| Homo sapiens chromosome 16 clone RP11-401P9, complete sequence Length = 169773 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 aggaggagcgagtgagcag 65 ||||||||||||||||||| Sbjct: 118502 aggaggagcgagtgagcag 118484
>gb|AC007334.8| Homo sapiens chromosome 16 clone RP11-147B17, complete sequence Length = 170791 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 aggaggagcgagtgagcag 65 ||||||||||||||||||| Sbjct: 68047 aggaggagcgagtgagcag 68029
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 ggccgccgcggcgagcacg 100 ||||||||||||||||||| Sbjct: 1886618 ggccgccgcggcgagcacg 1886636
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 ccatggcttcgtcggtggc 84 ||||||||||||||||||| Sbjct: 819971 ccatggcttcgtcggtggc 819953
>dbj|AP006619.1| Nocardia farcinica IFM 10152 plasmid pNF1 DNA, complete sequence Length = 184026 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 78 cggtggccgccgcggcgag 96 ||||||||||||||||||| Sbjct: 124701 cggtggccgccgcggcgag 124683
>dbj|AK110171.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-161-G06, full insert sequence Length = 4263 Score = 38.2 bits (19), Expect = 8.2 Identities = 22/23 (95%) Strand = Plus / Minus Query: 136 gaacgggcgcatcgtggcgcggt 158 ||||| ||||||||||||||||| Sbjct: 3313 gaacgcgcgcatcgtggcgcggt 3291
>dbj|AK104657.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-D03, full insert sequence Length = 1036 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 82 ggccgccgcggcgagcacg 100 ||||||||||||||||||| Sbjct: 84 ggccgccgcggcgagcacg 66
>dbj|AK059739.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-F02, full insert sequence Length = 1044 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 82 ggccgccgcggcgagcacg 100 ||||||||||||||||||| Sbjct: 84 ggccgccgcggcgagcacg 66
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 66 ccatggcttcgtcggtggc 84 ||||||||||||||||||| Sbjct: 827153 ccatggcttcgtcggtggc 827135
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 ccatggcttcgtcggtggc 84 ||||||||||||||||||| Sbjct: 2231293 ccatggcttcgtcggtggc 2231311
>gb|BC090067.1| Rattus norvegicus cDNA clone MGC:93613 IMAGE:7109006, complete cds Length = 2293 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 ggccgaggaggacaaagct 46 ||||||||||||||||||| Sbjct: 1769 ggccgaggaggacaaagct 1751
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Plus Query: 82 ggccgccgcggcgagcacg 100 ||||||||||||||||||| Sbjct: 1625057 ggccgccgcggcgagcacg 1625075
>gb|AF052745.1|AF052745 Oerskovia xanthineolytica beta-1,3-glucanase II (bglII) gene, complete cds Length = 1627 Score = 38.2 bits (19), Expect = 8.2 Identities = 25/27 (92%) Strand = Plus / Plus Query: 130 gccgcagaacgggcgcatcgtggcgcg 156 ||||||| |||||||||||| |||||| Sbjct: 585 gccgcagtacgggcgcatcgaggcgcg 611
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 82 ggccgccgcggcgagcacg 100 ||||||||||||||||||| Sbjct: 9746274 ggccgccgcggcgagcacg 9746256
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 76 gtcggtggccgccgcggcg 94 ||||||||||||||||||| Sbjct: 1897090 gtcggtggccgccgcggcg 1897072 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 74 tcgtcggtggccgccgcgg 92 ||||||||||||||||||| Sbjct: 1767237 tcgtcggtggccgccgcgg 1767219
>dbj|D78592.1| Rattus norvegicus mRNA for glucose-6-phosphatase catalytic subunit, complete cds Length = 2275 Score = 38.2 bits (19), Expect = 8.2 Identities = 19/19 (100%) Strand = Plus / Minus Query: 28 ggccgaggaggacaaagct 46 ||||||||||||||||||| Sbjct: 1781 ggccgaggaggacaaagct 1763 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 922,733 Number of Sequences: 3902068 Number of extensions: 922733 Number of successful extensions: 77139 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 73417 Number of HSP's gapped (non-prelim): 3722 length of query: 168 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 146 effective length of database: 17,147,199,772 effective search space: 2503491166712 effective search space used: 2503491166712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
