ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet60b01 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC102197.7| Mus musculus chromosome 1, clone RP24-466J11, complete sequence Length = 150253 Score = 42.1 bits (21), Expect = 0.34 Identities = 21/21 (100%) Strand = Plus / Plus Query: 44 cagagggaaagggggagaagg 64 ||||||||||||||||||||| Sbjct: 118960 cagagggaaagggggagaagg 118980
>gb|AC162880.4| Mus musculus chromosome 1, clone RP24-275N11, complete sequence Length = 164201 Score = 42.1 bits (21), Expect = 0.34 Identities = 21/21 (100%) Strand = Plus / Plus Query: 44 cagagggaaagggggagaagg 64 ||||||||||||||||||||| Sbjct: 6347 cagagggaaagggggagaagg 6367
>gb|AC164093.2| Mus musculus BAC clone RP23-131O16 from chromosome 16, complete sequence Length = 229443 Score = 42.1 bits (21), Expect = 0.34 Identities = 21/21 (100%) Strand = Plus / Plus Query: 44 cagagggaaagggggagaagg 64 ||||||||||||||||||||| Sbjct: 127197 cagagggaaagggggagaagg 127217
>emb|AL772311.19| Mouse DNA sequence from clone RP23-87P16 on chromosome 4, complete sequence Length = 234393 Score = 42.1 bits (21), Expect = 0.34 Identities = 21/21 (100%) Strand = Plus / Plus Query: 46 gagggaaagggggagaaggag 66 ||||||||||||||||||||| Sbjct: 18483 gagggaaagggggagaaggag 18503
>gb|AY427442.1|AY427440S3 Leishmania amazonensis meta 1 protein gene, complete cds Length = 1905 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 agagggaaagggggagaagg 64 |||||||||||||||||||| Sbjct: 1385 agagggaaagggggagaagg 1366
>gb|AC110901.16| Mus musculus chromosome 13, clone RP24-165P9, complete sequence Length = 179128 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 gggaaagggggagaaggaga 67 |||||||||||||||||||| Sbjct: 140265 gggaaagggggagaaggaga 140284
>gb|AY623660.1| Homo sapiens TNF receptor-associated factor 2 (TRAF2) gene, complete cds Length = 43834 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 cgacccacccagcagccagaggga 51 |||||| ||||||||||||||||| Sbjct: 2285 cgaccctcccagcagccagaggga 2262
>emb|CT009696.9| Mouse DNA sequence from clone RP23-11B13 on chromosome 9, complete sequence Length = 196093 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 44 cagagggaaagggggagaaggaga 67 ||||||| |||||||||||||||| Sbjct: 96772 cagaggggaagggggagaaggaga 96749
>gb|AC122031.2| Mus musculus BAC clone RP24-401P10 from 6, complete sequence Length = 157782 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 agagggaaagggggagaagg 64 |||||||||||||||||||| Sbjct: 79992 agagggaaagggggagaagg 79973
>emb|AL355987.31| Human DNA sequence from clone RP11-216L13 on chromosome 9 Contains the 3' end of the gene for a novel protein similar to mouse pancreatitis-induced protein 49 (PIP49), the 5' end of a novel gene (FLJ30346), five novel genes (containing LOC158062, KIAA1984, FLJ35320, FLJ36901, FLJ30985, FLJ10101, FLJ37063 FLJ13045, FLJ40767), a nucleolin (NCL) pseudogene, the gene for a novel protein similar to mouse lipocalin 8 (EP17, Lcn5), a 13kD lysosomal H+ transporting ATPase V1 subunit G isoform 1 (ATP6V1G1) pseudogene, the gene for phosphohistidine phosphatase (PHP14), the gene for a novel protein similar to rat apical early endosomal glycoprotein (LOC252882), the EDF1 gene for endothelial differentiation-related factor 1 (MBF1, EDF-1), the 5' end of the TRAF2 gene for TNF receptor-associated factor 2 (TRAP, TRAP3) and ten CpG islands, complete sequence Length = 182003 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 cgacccacccagcagccagaggga 51 |||||| ||||||||||||||||| Sbjct: 165642 cgaccctcccagcagccagaggga 165619
>emb|AL031430.2|HS406M12 Human DNA sequence from clone RP3-406M12 on chromosome 1p34.1-34.3 Contains a CpG island, complete sequence Length = 159281 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ccagcagccagagggaaagg 55 |||||||||||||||||||| Sbjct: 152265 ccagcagccagagggaaagg 152284
>gb|AC093120.4| Mus musculus Strain C57BL6/J Chromosome 6 BAC, RP23-125A24, Complete Sequence, complete sequence Length = 187794 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 cagagggaaagggggagaag 63 |||||||||||||||||||| Sbjct: 120695 cagagggaaagggggagaag 120714
>gb|AC106606.5| Rattus norvegicus 1 BAC CH230-148J18 (Children's Hospital Oakland Research Institute) complete sequence Length = 227298 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 agagggaaagggggagaagg 64 |||||||||||||||||||| Sbjct: 111741 agagggaaagggggagaagg 111722
>gb|AC025419.42| Homo sapiens 12 BAC RP11-230G5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 170331 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 ccacccagcagccagaggga 51 |||||||||||||||||||| Sbjct: 134950 ccacccagcagccagaggga 134969
>gb|AC015908.10| Homo sapiens chromosome 17, clone RP11-963H4, complete sequence Length = 158693 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 agagggaaagggggagaagg 64 |||||||||||||||||||| Sbjct: 153107 agagggaaagggggagaagg 153088
>gb|AF035229.1|AF035229 Leishmania amazonensis meta 1 gene, complete cds Length = 1621 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 agagggaaagggggagaagg 64 |||||||||||||||||||| Sbjct: 1101 agagggaaagggggagaagg 1082
>gb|AC027601.25| Homo sapiens chromosome 17, clone RP11-455O6, complete sequence Length = 192732 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 31 cccacccagcagccagaggg 50 |||||||||||||||||||| Sbjct: 155453 cccacccagcagccagaggg 155472
>gb|AC151756.2| Ornithorhynchus anatinus chromosome UNK clone OABb-466P24, complete sequence Length = 156508 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 44 cagagggaaagggggagaag 63 |||||||||||||||||||| Sbjct: 84765 cagagggaaagggggagaag 84784
>gb|AC138309.4| Mus musculus BAC clone RP23-250M10 from 13, complete sequence Length = 180449 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 gggaaagggggagaaggaga 67 |||||||||||||||||||| Sbjct: 77054 gggaaagggggagaaggaga 77073
>dbj|AP000679.7| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-21E14, complete sequence Length = 132641 Score = 40.1 bits (20), Expect = 1.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 ccacccagcagccagaggga 51 |||||||||||||||||||| Sbjct: 56324 ccacccagcagccagaggga 56343
>emb|AL732552.8| Mouse DNA sequence from clone RP23-145O14 on chromosome 4, complete sequence Length = 203332 Score = 40.1 bits (20), Expect = 1.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 46 gagggaaagggggagaaggagaca 69 ||||||||||| |||||||||||| Sbjct: 123301 gagggaaagggagagaaggagaca 123278
>gb|AC151778.1| Ornithorhynchus anatinus chromosome UNK clone OABb-238A1, complete sequence Length = 168798 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 44 cagagggaaagggggagaa 62 ||||||||||||||||||| Sbjct: 112594 cagagggaaagggggagaa 112576
>gb|AC136520.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017O06, complete sequence Length = 151656 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 agagggaaagggggagaag 63 ||||||||||||||||||| Sbjct: 33392 agagggaaagggggagaag 33374
>gb|AC137120.22| Mus musculus chromosome 15, clone RP23-255G14, complete sequence Length = 203811 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 47 agggaaagggggagaagga 65 ||||||||||||||||||| Sbjct: 165308 agggaaagggggagaagga 165326
>ref|NM_192595.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3495 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 72 gcggcgggcggagaggcaatggc 94 ||||||||||||| ||||||||| Sbjct: 358 gcggcgggcggagcggcaatggc 336
>gb|AC136519.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0007C23, complete sequence Length = 173764 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 agagggaaagggggagaag 63 ||||||||||||||||||| Sbjct: 133376 agagggaaagggggagaag 133358
>gb|AC111143.10| Mus musculus chromosome 3, clone RP23-372C7, complete sequence Length = 147125 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 45 agagggaaagggggagaaggaga 67 ||||||| ||||||||||||||| Sbjct: 8839 agagggagagggggagaaggaga 8861
>gb|AC136998.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0082P17, complete sequence Length = 157539 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 agagggaaagggggagaag 63 ||||||||||||||||||| Sbjct: 104533 agagggaaagggggagaag 104551
>gb|AC115719.10| Mus musculus chromosome 18, clone RP24-356J16, complete sequence Length = 177037 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 45 agagggaaagggggagaaggaga 67 |||||||||||| |||||||||| Sbjct: 13893 agagggaaagggagagaaggaga 13915
>gb|AC145590.3| Mus musculus BAC clone RP24-175D4 from chromosome 19, complete sequence Length = 179063 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 agggaaagggggagaagga 65 ||||||||||||||||||| Sbjct: 65781 agggaaagggggagaagga 65763
>gb|AC162613.2| Mus musculus chromosome 19, clone RP24-270E10, complete sequence Length = 147306 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 45 agagggaaagggggagaaggaga 67 ||||||||||||||||| ||||| Sbjct: 28638 agagggaaagggggagagggaga 28660
>gb|AC168853.1| Mus musculus BAC clone RP23-447G14 from chromosome 12, complete sequence Length = 188352 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 45 agagggaaagggggagaaggaga 67 ||||||||||||||||| ||||| Sbjct: 169318 agagggaaagggggagagggaga 169296
>gb|AY550464.1| Salmo salar clone Hae364R microsatellite sequence Length = 540 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 45 agagggaaagggggagaaggaga 67 |||||||||||| |||||||||| Sbjct: 393 agagggaaagggagagaaggaga 371
>gb|AC161586.5| Mus musculus BAC clone RP24-457J18 from chromosome 13, complete sequence Length = 146936 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 44 cagagggaaagggggagaa 62 ||||||||||||||||||| Sbjct: 140732 cagagggaaagggggagaa 140714
>gb|AC162914.2| Mus musculus BAC clone RP23-401O13 from chromosome 6, complete sequence Length = 194892 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 45 agagggaaagggggagaaggaga 67 ||||||||||||||||| ||||| Sbjct: 60462 agagggaaagggggagagggaga 60484
>gb|AC074295.7| Homo sapiens BAC clone RP11-634G23 from 7, complete sequence Length = 66403 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 cacccagcagccagaggga 51 ||||||||||||||||||| Sbjct: 24372 cacccagcagccagaggga 24390
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 90 atggcgacgacgacgtgcc 108 ||||||||||||||||||| Sbjct: 324847 atggcgacgacgacgtgcc 324829
>gb|AC121788.3| Mus musculus BAC clone RP23-395N2 from chromosome 10, complete sequence Length = 196144 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 gccagagggaaagggggag 60 ||||||||||||||||||| Sbjct: 192371 gccagagggaaagggggag 192353
>ref|XM_756612.1| Ustilago maydis 521 hypothetical protein (UM05558.1) partial mRNA Length = 3390 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 86 ggcaatggcgacgacgacg 104 ||||||||||||||||||| Sbjct: 1309 ggcaatggcgacgacgacg 1327
>emb|CT030198.1| Platypus DNA sequence from clone XX-300J13, complete sequence Length = 149672 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 agagggaaagggggagaag 63 ||||||||||||||||||| Sbjct: 128193 agagggaaagggggagaag 128211
>gb|AC127412.4| Mus musculus BAC clone RP23-234O14 from chromosome 16, complete sequence Length = 225685 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 45 agagggaaagggggagaaggaga 67 ||||||| ||||||||||||||| Sbjct: 147271 agagggagagggggagaaggaga 147249 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 45 agagggaaagggggagaaggaga 67 ||||||| ||||||||||||||| Sbjct: 147241 agagggagagggggagaaggaga 147219
>gb|AC118245.17| Mus musculus chromosome 6, clone RP23-292C5, complete sequence Length = 230218 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 45 agagggaaagggggagaaggaga 67 ||||||||||||||||| ||||| Sbjct: 79193 agagggaaagggggagagggaga 79171
>gb|AC124488.3| Mus musculus BAC clone RP23-452K20 from chromosome 1, complete sequence Length = 178446 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 45 agagggaaagggggagaaggaga 67 ||||||| ||||||||||||||| Sbjct: 92295 agagggagagggggagaaggaga 92317
>emb|CR855278.2| Platypus DNA sequence from clone XX-235F6, complete sequence Length = 140510 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 agagggaaagggggagaag 63 ||||||||||||||||||| Sbjct: 137628 agagggaaagggggagaag 137610
>gb|AC102627.8| Mus musculus chromosome 14, clone RP23-466M3, complete sequence Length = 193228 Score = 38.2 bits (19), Expect = 5.3 Identities = 25/27 (92%) Strand = Plus / Minus Query: 45 agagggaaagggggagaaggagacacc 71 |||| |||||||| ||||||||||||| Sbjct: 21775 agagagaaaggggcagaaggagacacc 21749
>gb|AC113598.8| Mus musculus chromosome 14, clone RP23-476N23, complete sequence Length = 214461 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 45 agagggaaagggggagaaggaga 67 ||||||||||||||||| ||||| Sbjct: 5423 agagggaaagggggagagggaga 5401
>gb|AC002451.1| Homo sapiens BAC clone GS1-306C12 from 7, complete sequence Length = 157099 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 51 aaagggggagaaggagaca 69 ||||||||||||||||||| Sbjct: 71410 aaagggggagaaggagaca 71392
>gb|AC133904.9| Mus musculus chromosome 19, clone RP24-143J12, complete sequence Length = 163882 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 47 agggaaagggggagaagga 65 ||||||||||||||||||| Sbjct: 163431 agggaaagggggagaagga 163449
>gb|AC111048.8| Mus musculus chromosome 19, clone RP23-355N22, complete sequence Length = 232012 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 45 agagggaaagggggagaaggaga 67 ||||||||||||||||| ||||| Sbjct: 157288 agagggaaagggggagagggaga 157310
>gb|AC113003.9| Mus musculus chromosome 18, clone RP23-246G4, complete sequence Length = 162882 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 49 ggaaagggggagaaggaga 67 ||||||||||||||||||| Sbjct: 131943 ggaaagggggagaaggaga 131925
>gb|AC091624.3| Canis familiaris clone RP81-117B1, complete sequence Length = 174712 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 33 cacccagcagccagaggga 51 ||||||||||||||||||| Sbjct: 87043 cacccagcagccagaggga 87061
>gb|AC110682.6| Rattus norvegicus 18 BAC CH230-197I20 (Children's Hospital Oakland Research Institute) complete sequence Length = 166696 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 45 agagggaaagggggagaaggaga 67 ||||||||||||||||| ||||| Sbjct: 162039 agagggaaagggggagagggaga 162061
>emb|Z95114.19|HS212A2 Human DNA sequence from clone CTA-212A2 on chromosome 22q12, complete sequence Length = 212753 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 45 agagggaaagggggagaaggaga 67 |||||||||||||| |||||||| Sbjct: 90596 agagggaaagggggcgaaggaga 90574
>emb|AL606970.12| Human DNA sequence from clone RP11-503C24 on chromosome 6 Contains the 3' end of a novel gene, up to five novel genes, (inclusing FLJ31232 and pp13671), a meningioma expressed antigen 6 (coiled-coil proline-rich) (MGEA6) pseudogene and three CpG islands, complete sequence Length = 161863 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 49 ggaaagggggagaaggaga 67 ||||||||||||||||||| Sbjct: 49596 ggaaagggggagaaggaga 49578
>emb|AL596093.18| Human DNA sequence from clone RP11-139P6 on chromosome 13 Contains part of the MCF2L gene for a MCF.2 cell line derived transforming sequence-like gene and two CpG islands, complete sequence Length = 39466 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 96 acgacgacgtgcctgctgg 114 ||||||||||||||||||| Sbjct: 12641 acgacgacgtgcctgctgg 12623
>emb|AL450467.8| Human DNA sequence from clone RP11-320E16 on chromosome 9 Contains the 5' end of a novel gene (FLJ35024), the VLDLR gene for very low density lipoprotein receptor and a CpG island, complete sequence Length = 74961 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 48 gggaaagggggagaaggag 66 ||||||||||||||||||| Sbjct: 28397 gggaaagggggagaaggag 28379
>emb|AL513484.6| Human DNA sequence from clone RP13-223P22 on chromosome Xq11.1-13.1, complete sequence Length = 59637 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 32 ccacccagcagccagaggg 50 ||||||||||||||||||| Sbjct: 29142 ccacccagcagccagaggg 29160
>emb|AL050342.42|HSDJ655K7 Human DNA sequence from clone RP4-655K7 on chromosome 1p35.3-36.13 Contains part of a gene encoding a novel protein,, complete sequence Length = 116857 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 30 acccacccagcagccagag 48 ||||||||||||||||||| Sbjct: 61151 acccacccagcagccagag 61169
>emb|AL035420.15|HS550H1 Human DNA sequence from clone RP4-550H1 on chromosome 20q11.1-11.22 Contains a high mobility group protein pseudogene, three novel genes, the 5' end of the EPB41L1 gene for Erythrocyte membrane protein band 4.1-like 1 protein and three CpG islands, complete sequence Length = 108803 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 47 agggaaagggggagaaggagaca 69 |||||||||||||||||| |||| Sbjct: 82742 agggaaagggggagaaggggaca 82764
>gb|AC165145.2| Mus musculus BAC clone RP24-385A10 from chromosome 13, complete sequence Length = 181942 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 agagggaaagggggagaag 63 ||||||||||||||||||| Sbjct: 91954 agagggaaagggggagaag 91936
>gb|AC018358.20| Homo sapiens 3 BAC RP11-333B11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 105762 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 45 agagggaaagggggagaaggaga 67 |||||||||| |||||||||||| Sbjct: 3093 agagggaaagagggagaaggaga 3115
>emb|AL513412.3|HS403H13 Homo sapiens chromosome 9 BAC RP11-403H13, complete sequence Length = 191668 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 36 ccagcagccagagggaaaggggg 58 |||| |||||||||||||||||| Sbjct: 59005 ccagaagccagagggaaaggggg 58983
>gb|AC156268.10| Mus musculus 10 BAC RP24-336P23 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 164611 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 45 agagggaaagggggagaaggaga 67 ||||||||||||| ||||||||| Sbjct: 101271 agagggaaaggggaagaaggaga 101249
>gb|AC100825.2| Homo sapiens chromosome 15, clone RP11-1152M12, complete sequence Length = 127680 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 cccacccagcagccagagg 49 ||||||||||||||||||| Sbjct: 20377 cccacccagcagccagagg 20359
>gb|AC021553.14| Homo sapiens chromosome 15, clone RP11-709B3, complete sequence Length = 185596 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 31 cccacccagcagccagagg 49 ||||||||||||||||||| Sbjct: 179367 cccacccagcagccagagg 179349
>gb|AC069227.24| Homo sapiens 12 BAC RP11-478G16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 167398 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 38 agcagccagagggaaagggggag 60 |||||||||||||||||| |||| Sbjct: 141758 agcagccagagggaaaggcggag 141736
>gb|AF404777.1| Homo sapiens phenylalanine hydroxylase (PAH) gene, complete cds Length = 171266 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 38 agcagccagagggaaagggggag 60 |||||||||||||||||| |||| Sbjct: 145631 agcagccagagggaaaggcggag 145609
>gb|AC160128.2| Mus musculus BAC clone RP23-286G17 from chromosome 12, complete sequence Length = 202315 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 45 agagggaaagggggagaaggaga 67 ||||||| ||||||||||||||| Sbjct: 41385 agagggagagggggagaaggaga 41363
>ref|NM_001018056.1| Homo sapiens very low density lipoprotein receptor (VLDLR), transcript variant 2, mRNA Length = 3562 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 48 gggaaagggggagaaggag 66 ||||||||||||||||||| Sbjct: 293 gggaaagggggagaaggag 275
>ref|NM_003383.3| Homo sapiens very low density lipoprotein receptor (VLDLR), transcript variant 1, mRNA Length = 3646 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 48 gggaaagggggagaaggag 66 ||||||||||||||||||| Sbjct: 293 gggaaagggggagaaggag 275
>gb|AC160137.2| Mus musculus BAC clone RP23-136A1 from chromosome 9, complete sequence Length = 241917 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 45 agagggaaagggggagaaggaga 67 ||||||||||| ||||||||||| Sbjct: 104726 agagggaaaggaggagaaggaga 104704
>gb|AC154802.3| Mus musculus BAC clone RP24-502O7 from chromosome 12, complete sequence Length = 164001 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 45 agagggaaagggggagaaggaga 67 |||||||||| |||||||||||| Sbjct: 146523 agagggaaagagggagaaggaga 146501
>gb|AC158544.1| Mus musculus 10 BAC RP24-212P21 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 152222 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 45 agagggaaagggggagaaggaga 67 ||||||||||||||||| ||||| Sbjct: 13321 agagggaaagggggagagggaga 13299
>gb|AC153514.8| Mus musculus 10 BAC RP23-406O24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 189633 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 45 agagggaaagggggagaaggaga 67 ||||||| ||||||||||||||| Sbjct: 159065 agagggagagggggagaaggaga 159087
>gb|AF274749.1|AF274749 Homo sapiens cholecystokinin (CCK) gene, promoter and exon 1 sequence Length = 2224 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 45 agagggaaagggggagaaggaga 67 |||||||||| |||||||||||| Sbjct: 182 agagggaaagagggagaaggaga 204
>gb|DQ067198.1| Homo sapiens very low density lipoprotein receptor (VLDLR) gene, complete cds Length = 36686 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 48 gggaaagggggagaaggag 66 ||||||||||||||||||| Sbjct: 2281 gggaaagggggagaaggag 2263
>gb|AC175822.2| Pan troglodytes BAC clone CH251-442M6 from chromosome 7, complete sequence Length = 163335 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 51 aaagggggagaaggagaca 69 ||||||||||||||||||| Sbjct: 50666 aaagggggagaaggagaca 50684
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 agagggaaagggggagaag 63 ||||||||||||||||||| Sbjct: 26694388 agagggaaagggggagaag 26694406
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 agagggaaagggggagaag 63 ||||||||||||||||||| Sbjct: 6085823 agagggaaagggggagaag 6085805
>gb|AC007217.5| Homo sapiens chromosome 16 clone RP11-167B4, complete sequence Length = 173929 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 45 agagggaaagggggagaaggaga 67 |||||||||| |||||||||||| Sbjct: 135141 agagggaaagagggagaaggaga 135119
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 86 ggcaatggcgacgacgacg 104 ||||||||||||||||||| Sbjct: 10118091 ggcaatggcgacgacgacg 10118073
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 72 gcggcgggcggagaggcaatggc 94 ||||||||||||| ||||||||| Sbjct: 23184129 gcggcgggcggagcggcaatggc 23184151
>gb|AC157604.2| Ornithorhynchus anatinus chromosome UNK clone OABb-185A1, complete sequence Length = 136586 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 agagggaaagggggagaag 63 ||||||||||||||||||| Sbjct: 73096 agagggaaagggggagaag 73078
>gb|AC154629.2| Mus musculus BAC clone RP23-313M15 from chromosome 16, complete sequence Length = 147288 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 45 agagggaaagggggagaaggaga 67 ||||||||||||||||| ||||| Sbjct: 43092 agagggaaagggggagagggaga 43114
>dbj|D16532.2| Homo sapiens gene for very low density lipoprotein receptor, complete cds Length = 6782 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 48 gggaaagggggagaaggag 66 ||||||||||||||||||| Sbjct: 1208 gggaaagggggagaaggag 1190
>gb|AC124392.6| Mus musculus BAC clone RP24-441F24 from chromosome 13, complete sequence Length = 159514 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 50 gaaagggggagaaggagac 68 ||||||||||||||||||| Sbjct: 141629 gaaagggggagaaggagac 141647
>gb|AC008174.2| Homo sapiens BAC clone RP11-400O18 from 2, complete sequence Length = 103663 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 47 agggaaagggggagaagga 65 ||||||||||||||||||| Sbjct: 12246 agggaaagggggagaagga 12228
>ref|XM_233955.3| PREDICTED: Rattus norvegicus kelch repeat and BTB (POZ) domain containing 9 (predicted) (Kbtbd9_predicted), mRNA Length = 5075 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 46 gagggaaagggggagaagg 64 ||||||||||||||||||| Sbjct: 74 gagggaaagggggagaagg 92
>dbj|AP003048.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0710A02 Length = 157201 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 72 gcggcgggcggagaggcaatggc 94 ||||||||||||| ||||||||| Sbjct: 116288 gcggcgggcggagcggcaatggc 116310
>emb|AL844608.18| Mouse DNA sequence from clone RP23-27L22 on chromosome 2, complete sequence Length = 207035 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 45 agagggaaagggggagaaggaga 67 ||||||| ||||||||||||||| Sbjct: 50594 agagggagagggggagaaggaga 50572
>dbj|AP004770.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0017G06 Length = 150628 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 86 ggcaatggcgacgacgacg 104 ||||||||||||||||||| Sbjct: 65785 ggcaatggcgacgacgacg 65767
>gb|AC154742.2| Mus musculus BAC clone RP24-392F16 from 13, complete sequence Length = 129749 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 44 cagagggaaagggggagaa 62 ||||||||||||||||||| Sbjct: 25704 cagagggaaagggggagaa 25686
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 90 atggcgacgacgacgtgcc 108 ||||||||||||||||||| Sbjct: 1894945 atggcgacgacgacgtgcc 1894963
>gb|AC154846.2| Mus musculus BAC clone RP23-45E1 from 14, complete sequence Length = 250542 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 45 agagggaaagggggagaaggaga 67 ||||||||||||||||| ||||| Sbjct: 89765 agagggaaagggggagagggaga 89787
>gb|AC132613.4| Mus musculus BAC clone RP23-285C21 from 6, complete sequence Length = 221317 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 36 ccagcagccagagggaaag 54 ||||||||||||||||||| Sbjct: 145406 ccagcagccagagggaaag 145424
>gb|AC135255.2| Homo sapiens 12 BAC RP11-118B13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 55548 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 44 cagagggaaagggggagaa 62 ||||||||||||||||||| Sbjct: 23430 cagagggaaagggggagaa 23412
>gb|AC156270.5| Mus musculus 10 BAC RP24-289H6 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 163328 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 42 gccagagggaaagggggag 60 ||||||||||||||||||| Sbjct: 12516 gccagagggaaagggggag 12498
>emb|AL671921.16| Mouse DNA sequence from clone RP23-288B16 on chromosome 3, complete sequence Length = 123444 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 agagggaaagggggagaag 63 ||||||||||||||||||| Sbjct: 11221 agagggaaagggggagaag 11203
>emb|AL773557.21| Mouse DNA sequence from clone RP23-391F9 on chromosome 2, complete sequence Length = 215139 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 45 agagggaaagggggagaaggaga 67 ||||||||||||||||| ||||| Sbjct: 40185 agagggaaagggggagagggaga 40207
>dbj|AP005897.1| Homo sapiens genomic DNA, chromosome 11 clone:CMF9-70K11, complete sequence Length = 10100 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 31 cccacccagcagccagagg 49 ||||||||||||||||||| Sbjct: 8626 cccacccagcagccagagg 8644
>gb|AC105408.5| Mus musculus BAC clone RP24-217P15 from chromosome 15, complete sequence Length = 162325 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 47 agggaaagggggagaagga 65 ||||||||||||||||||| Sbjct: 84353 agggaaagggggagaagga 84371
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 45 agagggaaagggggagaag 63 ||||||||||||||||||| Sbjct: 27019520 agagggaaagggggagaag 27019538
>gb|AC159269.3| Mus musculus BAC clone RP23-426N14 from chromosome 12, complete sequence Length = 184137 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 45 agagggaaagggggagaaggaga 67 |||||||||| |||||||||||| Sbjct: 35208 agagggaaagagggagaaggaga 35186
>emb|AL691474.29| Mouse DNA sequence from clone RP23-406D5 on chromosome 4, complete sequence Length = 176652 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 45 agagggaaagggggagaaggaga 67 ||||||||||||||||| ||||| Sbjct: 99202 agagggaaagggggagagggaga 99224
>gb|AC122394.5| Mus musculus BAC clone RP24-85N8 from 6, complete sequence Length = 215914 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 49 ggaaagggggagaaggaga 67 ||||||||||||||||||| Sbjct: 138268 ggaaagggggagaaggaga 138250
>gb|AC122346.4| Mus musculus BAC clone RP23-368L6 from 13, complete sequence Length = 198130 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Plus Query: 50 gaaagggggagaaggagac 68 ||||||||||||||||||| Sbjct: 49473 gaaagggggagaaggagac 49491
>dbj|AB208822.1| Homo sapiens mRNA for Very low-density lipoprotein receptor precursor variant protein Length = 3262 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 48 gggaaagggggagaaggag 66 ||||||||||||||||||| Sbjct: 68 gggaaagggggagaaggag 50
>gb|AC164414.5| Mus musculus chromosome 1, clone RP24-75E15, complete sequence Length = 213369 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 45 agagggaaagggggagaag 63 ||||||||||||||||||| Sbjct: 100105 agagggaaagggggagaag 100087
>emb|AL592422.11| Mouse DNA sequence from clone RP23-218O16 on chromosome 11, complete sequence Length = 205668 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Minus Query: 45 agagggaaagggggagaaggaga 67 ||||||||||||||||| ||||| Sbjct: 5984 agagggaaagggggagagggaga 5962
>gb|L20470.1|HUMVLDLR Human very low density lipoprotein receptor mRNA, complete cds Length = 3656 Score = 38.2 bits (19), Expect = 5.3 Identities = 19/19 (100%) Strand = Plus / Minus Query: 48 gggaaagggggagaaggag 66 ||||||||||||||||||| Sbjct: 288 gggaaagggggagaaggag 270
>emb|AL662835.11| Mouse DNA sequence from clone RP23-458A23 on chromosome 11, complete sequence Length = 162024 Score = 38.2 bits (19), Expect = 5.3 Identities = 22/23 (95%) Strand = Plus / Plus Query: 45 agagggaaagggggagaaggaga 67 ||||||||||||||||| ||||| Sbjct: 98081 agagggaaagggggagagggaga 98103 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,112,585 Number of Sequences: 3902068 Number of extensions: 1112585 Number of successful extensions: 95660 Number of sequences better than 10.0: 111 Number of HSP's better than 10.0 without gapping: 111 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95060 Number of HSP's gapped (non-prelim): 600 length of query: 116 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 95 effective length of database: 17,151,101,840 effective search space: 1629354674800 effective search space used: 1629354674800 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
