| Clone Name | baet59g04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK119522.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-D11, full insert sequence Length = 1468 Score = 180 bits (91), Expect = 1e-42 Identities = 159/181 (87%), Gaps = 3/181 (1%) Strand = Plus / Plus Query: 30 ggacatggcgtcgcccatgctctccacggccatggcgccactccaggggggca---tgct 86 ||||||||||||||||||||||||| | |||| | |||||||||||| ||| || Sbjct: 33 ggacatggcgtcgcccatgctctccgccgccaccgtgccactccagggaggcggcttgtc 92 Query: 87 ggagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccga 146 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 93 ggagttctccggcctgaggagctcgtcgtcgctgccgctgcggcggaatgccacctccga 152 Query: 147 cgacttcatgtccgccgtctccttcaggacatacgcggtgagcacgagcggcgggtcgcg 206 |||||||||| ||| |||||||||||||| ||||||| |||||||||||||| |||| Sbjct: 153 cgacttcatgaacgcggtctccttcaggacccacgcggttggcacgagcggcggggcgcg 212 Query: 207 g 207 | Sbjct: 213 g 213
>dbj|AK119220.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-H03, full insert sequence Length = 1366 Score = 180 bits (91), Expect = 1e-42 Identities = 159/181 (87%), Gaps = 3/181 (1%) Strand = Plus / Plus Query: 30 ggacatggcgtcgcccatgctctccacggccatggcgccactccaggggggca---tgct 86 ||||||||||||||||||||||||| | |||| | |||||||||||| ||| || Sbjct: 33 ggacatggcgtcgcccatgctctccgccgccaccgtgccactccagggaggcggcttgtc 92 Query: 87 ggagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccga 146 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 93 ggagttctccggcctgaggagctcgtcgtcgctgccgctgcggcggaatgccacctccga 152 Query: 147 cgacttcatgtccgccgtctccttcaggacatacgcggtgagcacgagcggcgggtcgcg 206 |||||||||| ||| |||||||||||||| ||||||| |||||||||||||| |||| Sbjct: 153 cgacttcatgaacgcggtctccttcaggacccacgcggttggcacgagcggcggggcgcg 212 Query: 207 g 207 | Sbjct: 213 g 213
>dbj|AK104690.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-G03, full insert sequence Length = 1540 Score = 180 bits (91), Expect = 1e-42 Identities = 159/181 (87%), Gaps = 3/181 (1%) Strand = Plus / Plus Query: 30 ggacatggcgtcgcccatgctctccacggccatggcgccactccaggggggca---tgct 86 ||||||||||||||||||||||||| | |||| | |||||||||||| ||| || Sbjct: 38 ggacatggcgtcgcccatgctctccgccgccaccgtgccactccagggaggcggcttgtc 97 Query: 87 ggagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccga 146 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 98 ggagttctccggcctgaggagctcgtcgtcgctgccgctgcggcggaatgccacctccga 157 Query: 147 cgacttcatgtccgccgtctccttcaggacatacgcggtgagcacgagcggcgggtcgcg 206 |||||||||| ||| |||||||||||||| ||||||| |||||||||||||| |||| Sbjct: 158 cgacttcatgaacgcggtctccttcaggacccacgcggttggcacgagcggcggggcgcg 217 Query: 207 g 207 | Sbjct: 218 g 218
>dbj|AK103994.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-018-F06, full insert sequence Length = 1538 Score = 180 bits (91), Expect = 1e-42 Identities = 159/181 (87%), Gaps = 3/181 (1%) Strand = Plus / Plus Query: 30 ggacatggcgtcgcccatgctctccacggccatggcgccactccaggggggca---tgct 86 ||||||||||||||||||||||||| | |||| | |||||||||||| ||| || Sbjct: 38 ggacatggcgtcgcccatgctctccgccgccaccgtgccactccagggaggcggcttgtc 97 Query: 87 ggagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccga 146 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 98 ggagttctccggcctgaggagctcgtcgtcgctgccgctgcggcggaatgccacctccga 157 Query: 147 cgacttcatgtccgccgtctccttcaggacatacgcggtgagcacgagcggcgggtcgcg 206 |||||||||| ||| |||||||||||||| ||||||| |||||||||||||| |||| Sbjct: 158 cgacttcatgaacgcggtctccttcaggacccacgcggttggcacgagcggcggggcgcg 217 Query: 207 g 207 | Sbjct: 218 g 218
>dbj|AK103932.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E09, full insert sequence Length = 1566 Score = 180 bits (91), Expect = 1e-42 Identities = 159/181 (87%), Gaps = 3/181 (1%) Strand = Plus / Plus Query: 30 ggacatggcgtcgcccatgctctccacggccatggcgccactccaggggggca---tgct 86 ||||||||||||||||||||||||| | |||| | |||||||||||| ||| || Sbjct: 38 ggacatggcgtcgcccatgctctccgccgccaccgtgccactccagggaggcggcttgtc 97 Query: 87 ggagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccga 146 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 98 ggagttctccggcctgaggagctcgtcgtcgctgccgctgcggcggaatgccacctccga 157 Query: 147 cgacttcatgtccgccgtctccttcaggacatacgcggtgagcacgagcggcgggtcgcg 206 |||||||||| ||| |||||||||||||| ||||||| |||||||||||||| |||| Sbjct: 158 cgacttcatgaacgcggtctccttcaggacccacgcggttggcacgagcggcggggcgcg 217 Query: 207 g 207 | Sbjct: 218 g 218
>dbj|AK103922.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-B10, full insert sequence Length = 1473 Score = 180 bits (91), Expect = 1e-42 Identities = 159/181 (87%), Gaps = 3/181 (1%) Strand = Plus / Plus Query: 30 ggacatggcgtcgcccatgctctccacggccatggcgccactccaggggggca---tgct 86 ||||||||||||||||||||||||| | |||| | |||||||||||| ||| || Sbjct: 38 ggacatggcgtcgcccatgctctccgccgccaccgtgccactccagggaggcggcttgtc 97 Query: 87 ggagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccga 146 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 98 ggagttctccggcctgaggagctcgtcgtcgctgccgctgcggcggaatgccacctccga 157 Query: 147 cgacttcatgtccgccgtctccttcaggacatacgcggtgagcacgagcggcgggtcgcg 206 |||||||||| ||| |||||||||||||| ||||||| |||||||||||||| |||| Sbjct: 158 cgacttcatgaacgcggtctccttcaggacccacgcggttggcacgagcggcggggcgcg 217 Query: 207 g 207 | Sbjct: 218 g 218
>dbj|AK071685.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108H17, full insert sequence Length = 1571 Score = 180 bits (91), Expect = 1e-42 Identities = 159/181 (87%), Gaps = 3/181 (1%) Strand = Plus / Plus Query: 30 ggacatggcgtcgcccatgctctccacggccatggcgccactccaggggggca---tgct 86 ||||||||||||||||||||||||| | |||| | |||||||||||| ||| || Sbjct: 34 ggacatggcgtcgcccatgctctccgccgccaccgtgccactccagggaggcggcttgtc 93 Query: 87 ggagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccga 146 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 94 ggagttctccggcctgaggagctcgtcgtcgctgccgctgcggcggaatgccacctccga 153 Query: 147 cgacttcatgtccgccgtctccttcaggacatacgcggtgagcacgagcggcgggtcgcg 206 |||||||||| ||| |||||||||||||| ||||||| |||||||||||||| |||| Sbjct: 154 cgacttcatgaacgcggtctccttcaggacccacgcggttggcacgagcggcggggcgcg 213 Query: 207 g 207 | Sbjct: 214 g 214
>dbj|AK067817.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116O22, full insert sequence Length = 778 Score = 180 bits (91), Expect = 1e-42 Identities = 159/181 (87%), Gaps = 3/181 (1%) Strand = Plus / Plus Query: 30 ggacatggcgtcgcccatgctctccacggccatggcgccactccaggggggca---tgct 86 ||||||||||||||||||||||||| | |||| | |||||||||||| ||| || Sbjct: 39 ggacatggcgtcgcccatgctctccgccgccaccgtgccactccagggaggcggcttgtc 98 Query: 87 ggagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccga 146 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 99 ggagttctccggcctgaggagctcgtcgtcgctgccgctgcggcggaatgccacctccga 158 Query: 147 cgacttcatgtccgccgtctccttcaggacatacgcggtgagcacgagcggcgggtcgcg 206 |||||||||| ||| |||||||||||||| ||||||| |||||||||||||| |||| Sbjct: 159 cgacttcatgaacgcggtctccttcaggacccacgcggttggcacgagcggcggggcgcg 218 Query: 207 g 207 | Sbjct: 219 g 219
>ref|XM_472744.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1209 Score = 172 bits (87), Expect = 3e-40 Identities = 155/177 (87%), Gaps = 3/177 (1%) Strand = Plus / Plus Query: 34 atggcgtcgcccatgctctccacggccatggcgccactccaggggggca---tgctggag 90 ||||||||||||||||||||| | |||| | |||||||||||| ||| || |||| Sbjct: 1 atggcgtcgcccatgctctccgccgccaccgtgccactccagggaggcggcttgtcggag 60 Query: 91 ttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccgacgac 150 |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct: 61 ttctccggcctgaggagctcgtcgtcgctgccgctgcggcggaatgccacctccgacgac 120 Query: 151 ttcatgtccgccgtctccttcaggacatacgcggtgagcacgagcggcgggtcgcgg 207 |||||| ||| |||||||||||||| ||||||| |||||||||||||| ||||| Sbjct: 121 ttcatgaacgcggtctccttcaggacccacgcggttggcacgagcggcggggcgcgg 177
>gb|AY103602.1| Zea mays PCO093211 mRNA sequence Length = 1490 Score = 151 bits (76), Expect = 1e-33 Identities = 109/120 (90%) Strand = Plus / Plus Query: 88 gagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccgac 147 |||||||||||||| |||||||| |||||||||| | || |||||||||||||||||| Sbjct: 91 gagttctccgggctcaggagctccgcgtcgctgcccatgcgccggaatgccacctccgac 150 Query: 148 gacttcatgtccgccgtctccttcaggacatacgcggtgagcacgagcggcgggtcgcgg 207 ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct: 151 gacttcatgtccgccgtctccttcaggacccacgcggtcggcacgagcggcgggtcgcgg 210
>emb|X07157.1|ZMCHGADP Maize cytosolic mRNA for subunit A of chloroplast GAPDH (GapA) glyceraldehyde-3-phosphate dehydrogenase Length = 1382 Score = 143 bits (72), Expect = 2e-31 Identities = 108/120 (90%) Strand = Plus / Plus Query: 88 gagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccgac 147 |||||||||||||| |||||||| |||||||||| | || |||||||||||||||||| Sbjct: 1 gagttctccgggctcaggagctccgcgtcgctgcccatgcgccggaatgccacctccgac 60 Query: 148 gacttcatgtccgccgtctccttcaggacatacgcggtgagcacgagcggcgggtcgcgg 207 ||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||| Sbjct: 61 gacttcatgtccgccgtctccttcaggacccacgcggtcggcacgagcggcgggccgcgg 120
>emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21, complete sequence Length = 138969 Score = 141 bits (71), Expect = 1e-30 Identities = 92/99 (92%) Strand = Plus / Plus Query: 87 ggagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccga 146 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 120791 ggagttctccggcctgaggagctcgtcgtcgctgccgctgcggcggaatgccacctccga 120850 Query: 147 cgacttcatgtccgccgtctccttcaggacatacgcggt 185 |||||||||| ||| |||||||||||||| ||||||| Sbjct: 120851 cgacttcatgaacgcggtctccttcaggacccacgcggt 120889 Score = 54.0 bits (27), Expect = 2e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 30 ggacatggcgtcgcccatgctctccacggccatggcgccactccagg 76 ||||||||||||||||||||||||| | |||| | ||||||||||| Sbjct: 120634 ggacatggcgtcgcccatgctctccgccgccaccgtgccactccagg 120680
>emb|AL606460.3|OSJN00003 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0072F16, complete sequence Length = 176383 Score = 141 bits (71), Expect = 1e-30 Identities = 92/99 (92%) Strand = Plus / Plus Query: 87 ggagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccga 146 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 6472 ggagttctccggcctgaggagctcgtcgtcgctgccgctgcggcggaatgccacctccga 6531 Query: 147 cgacttcatgtccgccgtctccttcaggacatacgcggt 185 |||||||||| ||| |||||||||||||| ||||||| Sbjct: 6532 cgacttcatgaacgcggtctccttcaggacccacgcggt 6570 Score = 54.0 bits (27), Expect = 2e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 30 ggacatggcgtcgcccatgctctccacggccatggcgccactccagg 76 ||||||||||||||||||||||||| | |||| | ||||||||||| Sbjct: 6315 ggacatggcgtcgcccatgctctccgccgccaccgtgccactccagg 6361
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 141 bits (71), Expect = 1e-30 Identities = 92/99 (92%) Strand = Plus / Plus Query: 87 ggagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccga 146 |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 22912016 ggagttctccggcctgaggagctcgtcgtcgctgccgctgcggcggaatgccacctccga 22912075 Query: 147 cgacttcatgtccgccgtctccttcaggacatacgcggt 185 |||||||||| ||| |||||||||||||| ||||||| Sbjct: 22912076 cgacttcatgaacgcggtctccttcaggacccacgcggt 22912114 Score = 54.0 bits (27), Expect = 2e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 30 ggacatggcgtcgcccatgctctccacggccatggcgccactccagg 76 ||||||||||||||||||||||||| | |||| | ||||||||||| Sbjct: 22911859 ggacatggcgtcgcccatgctctccgccgccaccgtgccactccagg 22911905
>gb|M31481.1|MZENAR1 Maize glyceraldehyde-3-phosphate dehydrogenase mRNA, 5' end Length = 386 Score = 135 bits (68), Expect = 6e-29 Identities = 107/120 (89%) Strand = Plus / Plus Query: 88 gagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccgac 147 |||||||||||||| |||||||| |||||||||| | || |||||||||||||||||| Sbjct: 72 gagttctccgggctcaggagctccgcgtcgctgcccatgcgccggaatgccacctccgac 131 Query: 148 gacttcatgtccgccgtctccttcaggacatacgcggtgagcacgagcggcgggtcgcgg 207 ||||||||||||||||||||||||||||| ||||||| | |||||||||||| ||||| Sbjct: 132 gacttcatgtccgccgtctccttcaggacccacgcggtcggtacgagcggcgggccgcgg 191
>gb|AF022730.1|AF022730 Oryza sativa glyceralehyde-3-phosphate dehydrogenase subunit (GAPDH) mRNA, partial cds Length = 1073 Score = 129 bits (65), Expect = 4e-27 Identities = 154/182 (84%), Gaps = 5/182 (2%) Strand = Plus / Plus Query: 30 ggacatggcgtcgcccatgctctccacggccatggcgccactccagggg----ggcatgc 85 ||||||||||||||| ||||||||| | |||| | ||||||||||||| ||| || Sbjct: 41 ggacatggcgtcgcc-atgctctccgccgccaccgtgccactccaggggaggcggcttgt 99 Query: 86 tggagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccg 145 ||| |||||||| |||||||||||||||||||||||||| |||||| |||||||||||| Sbjct: 100 cggatttctccggcctgaggagctcgtcgtcgctgccgctgcggcgggatgccacctccg 159 Query: 146 acgacttcatgtccgccgtctccttcaggacatacgcggtgagcacgagcggcgggtcgc 205 || |||||||| | | |||||||||||||| ||||||| |||||| ||||||| ||| Sbjct: 160 acaacttcatgaacccggtctccttcaggacccacgcggttggcacgaacggcggggcgc 219 Query: 206 gg 207 || Sbjct: 220 gg 221
>emb|X15408.1|ZMGPA1 Maize Gpa1 gene for glyceraldehyde-3-phosphate dehydrogenase subunit A Length = 6414 Score = 123 bits (62), Expect = 2e-25 Identities = 89/98 (90%) Strand = Plus / Plus Query: 88 gagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccgac 147 |||||||||||||| |||||||| |||||||||| | || |||||||||||||||||| Sbjct: 1703 gagttctccgggctcaggagctccgcgtcgctgcccatgcgccggaatgccacctccgac 1762 Query: 148 gacttcatgtccgccgtctccttcaggacatacgcggt 185 ||||||||||||||||||||||||||||| ||||||| Sbjct: 1763 gacttcatgtccgccgtctccttcaggacccacgcggt 1800
>gb|M18976.1|MZEG3PD Zea mays chloroplast glyceraldehyde-3-phosphate dehydrogenase gene, complete cds, clone lambda-gapA1 Length = 6414 Score = 123 bits (62), Expect = 2e-25 Identities = 89/98 (90%) Strand = Plus / Plus Query: 88 gagttctccgggctgaggagctcgtcgtcgctgccgctccggcggaatgccacctccgac 147 |||||||||||||| |||||||| |||||||||| | || |||||||||||||||||| Sbjct: 1703 gagttctccgggctcaggagctccgcgtcgctgcccatgcgccggaatgccacctccgac 1762 Query: 148 gacttcatgtccgccgtctccttcaggacatacgcggt 185 ||||||||||||||||||||||||||||| ||||||| Sbjct: 1763 gacttcatgtccgccgtctccttcaggacccacgcggt 1800
>emb|X15406.1|ZMPGPA1 Maize pseudo-Gpa1 pseudogene for glyceraldehyde-3-phosphate dehydrogenase subunit A Length = 5922 Score = 109 bits (55), Expect = 3e-21 Identities = 76/83 (91%) Strand = Plus / Plus Query: 103 aggagctcgtcgtcgctgccgctccggcggaatgccacctccgacgacttcatgtccgcc 162 |||||||| ||||||||||| | || ||||||||||||||||||||||||||||||||| Sbjct: 1757 aggagctccgcgtcgctgccgatgcgccggaatgccacctccgacgacttcatgtccgcc 1816 Query: 163 gtctccttcaggacatacgcggt 185 |||||||||||||| ||||||| Sbjct: 1817 gtctccttcaggacccacgcggt 1839
>emb|X15407.1|ZMPGPA2 Maize pseudo-Gpa2 pseudogene for glyceraldehyde-3-phosphate dehydrogenase subunit A Length = 8839 Score = 89.7 bits (45), Expect = 3e-15 Identities = 66/73 (90%) Strand = Plus / Plus Query: 103 aggagctcgtcgtcgctgccgctccggcggaatgccacctccgacgacttcatgtccgcc 162 |||||||| ||||||||||| | || ||||||||||||||||||| |||||||||||| Sbjct: 4928 aggagctccgcgtcgctgccgatgcgctggaatgccacctccgacgaattcatgtccgcc 4987 Query: 163 gtctccttcagga 175 ||||||||||||| Sbjct: 4988 gtctccttcagga 5000
>gb|AC023296.6| Homo sapiens chromosome 8, clone RP11-564K14, complete sequence Length = 189532 Score = 46.1 bits (23), Expect = 0.043 Identities = 23/23 (100%) Strand = Plus / Minus Query: 72 ccaggggggcatgctggagttct 94 ||||||||||||||||||||||| Sbjct: 154385 ccaggggggcatgctggagttct 154363
>gb|AY450985.1| HIV-1 isolate NN92/732 from USA tat protein (tat) gene, partial sequence Length = 321 Score = 42.1 bits (21), Expect = 0.67 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 ctgaggagctcgtcgtcgctg 120 ||||||||||||||||||||| Sbjct: 258 ctgaggagctcgtcgtcgctg 238
>gb|AY450984.1| HIV-1 isolate NN88/732 from USA tat protein (tat) gene, partial sequence Length = 321 Score = 42.1 bits (21), Expect = 0.67 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 ctgaggagctcgtcgtcgctg 120 ||||||||||||||||||||| Sbjct: 258 ctgaggagctcgtcgtcgctg 238
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 0.67 Identities = 21/21 (100%) Strand = Plus / Minus Query: 180 cgcggtgagcacgagcggcgg 200 ||||||||||||||||||||| Sbjct: 1509597 cgcggtgagcacgagcggcgg 1509577
>gb|U43999.1|HIVU43999 Human immunodeficiency virus type 1 tat mRNA, partial cds Length = 243 Score = 42.1 bits (21), Expect = 0.67 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 ctgaggagctcgtcgtcgctg 120 ||||||||||||||||||||| Sbjct: 207 ctgaggagctcgtcgtcgctg 187
>ref|XM_483629.1| Oryza sativa (japonica cultivar-group), mRNA Length = 528 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 agctcgtcgtcgctgccgct 125 |||||||||||||||||||| Sbjct: 501 agctcgtcgtcgctgccgct 482
>gb|AY734209.1| HIV-1 isolate E089BB from USA tat protein (tat) gene, partial cds Length = 297 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tgaggagctcgtcgtcgctg 120 |||||||||||||||||||| Sbjct: 211 tgaggagctcgtcgtcgctg 192
>gb|AY734165.1| HIV-1 isolate E055BB from USA tat protein (tat) gene, partial cds Length = 295 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tgaggagctcgtcgtcgctg 120 |||||||||||||||||||| Sbjct: 208 tgaggagctcgtcgtcgctg 189
>gb|AY734164.1| HIV-1 isolate B055BB from USA tat protein (tat) gene, partial cds Length = 292 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tgaggagctcgtcgtcgctg 120 |||||||||||||||||||| Sbjct: 208 tgaggagctcgtcgtcgctg 189
>gb|AY734163.1| HIV-1 isolate E055AA from USA tat protein (tat) gene, partial cds Length = 285 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tgaggagctcgtcgtcgctg 120 |||||||||||||||||||| Sbjct: 198 tgaggagctcgtcgtcgctg 179
>gb|AY734162.1| HIV-1 isolate B055AA from USA tat protein (tat) gene, partial cds Length = 262 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tgaggagctcgtcgtcgctg 120 |||||||||||||||||||| Sbjct: 175 tgaggagctcgtcgtcgctg 156
>gb|DQ396398.1| HIV-1 isolate 03ZAPS045MB2 from South Africa, complete genome Length = 9031 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tgaggagctcgtcgtcgctg 120 |||||||||||||||||||| Sbjct: 5443 tgaggagctcgtcgtcgctg 5424
>gb|AY450998.1| HIV-1 isolate SS90/26 from USA tat protein (tat) gene, partial sequence Length = 321 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tgaggagctcgtcgtcgctg 120 |||||||||||||||||||| Sbjct: 257 tgaggagctcgtcgtcgctg 238
>gb|AY450969.1| HIV-1 isolate AE96/999260 from USA tat protein (tat) gene, partial sequence Length = 321 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tgaggagctcgtcgtcgctg 120 |||||||||||||||||||| Sbjct: 257 tgaggagctcgtcgtcgctg 238
>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16 Length = 349876 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 tgctggagttctccgggctg 102 |||||||||||||||||||| Sbjct: 180213 tgctggagttctccgggctg 180232
>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12 Length = 348934 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 tgctggagttctccgggctg 102 |||||||||||||||||||| Sbjct: 13755 tgctggagttctccgggctg 13774
>gb|AF408629.1| HIV-1 isolate A32879 from Argentina, complete genome Length = 9192 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tgaggagctcgtcgtcgctg 120 |||||||||||||||||||| Sbjct: 5575 tgaggagctcgtcgtcgctg 5556
>gb|AY713412.1| HIV-1 isolate 90US_873 from USA gag protein (gag) and pol protein (pol) genes, partial cds; and vif protein (vif), vpr protein (vpr), tat protein (tat), rev protein (rev), vpu protein (vpu), envelope glycoprotein (env), and nef protein (nef) genes, complete cds Length = 8791 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tgaggagctcgtcgtcgctg 120 |||||||||||||||||||| Sbjct: 5210 tgaggagctcgtcgtcgctg 5191
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 agctcgtcgtcgctgccgct 125 |||||||||||||||||||| Sbjct: 27356053 agctcgtcgtcgctgccgct 27356034
>gb|AF326484.1|AF326484 Zea mays NOD26-like membrane integral protein ZmNIP2-1 mRNA, complete cds Length = 1293 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 ggggggcatgctggagttct 94 |||||||||||||||||||| Sbjct: 282 ggggggcatgctggagttct 263
>gb|AY857182.2| HIV-1 isolate 9762120 from Australia, partial genome Length = 8415 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tgaggagctcgtcgtcgctg 120 |||||||||||||||||||| Sbjct: 4843 tgaggagctcgtcgtcgctg 4824
>dbj|AP004163.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1323_A06 Length = 95665 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 agctcgtcgtcgctgccgct 125 |||||||||||||||||||| Sbjct: 57580 agctcgtcgtcgctgccgct 57561
>gb|AY835778.1| HIV-1 isolate 5018-86 clone pbf6 from USA, complete genome Length = 9703 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tgaggagctcgtcgtcgctg 120 |||||||||||||||||||| Sbjct: 6008 tgaggagctcgtcgtcgctg 5989
>gb|AY835777.1| HIV-1 isolate 5018-83 clone pbf4 from USA, complete genome Length = 9703 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tgaggagctcgtcgtcgctg 120 |||||||||||||||||||| Sbjct: 6008 tgaggagctcgtcgtcgctg 5989
>gb|U80572.1|HIVU80572 HIV-1 patient TPVIII, sample 1995, tat protein (tat) gene, partial cds Length = 216 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tgaggagctcgtcgtcgctg 120 |||||||||||||||||||| Sbjct: 179 tgaggagctcgtcgtcgctg 160
>gb|U80555.1|HIVU80555 HIV-1 patient LTS16, sample 1995, tat protein (tat) gene, partial cds Length = 216 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tgaggagctcgtcgtcgctg 120 |||||||||||||||||||| Sbjct: 179 tgaggagctcgtcgtcgctg 160
>gb|AF000525.1|AF000525 HIV-1 strain CH94-A2tat from USA, Tat protein (tat) gene, partial cds Length = 219 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tgaggagctcgtcgtcgctg 120 |||||||||||||||||||| Sbjct: 179 tgaggagctcgtcgtcgctg 160
>gb|AF000522.1|AF000522 HIV-1 strain AD93-A3tat from USA, Tat protein (tat) gene, partial cds Length = 219 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tgaggagctcgtcgtcgctg 120 |||||||||||||||||||| Sbjct: 179 tgaggagctcgtcgtcgctg 160
>gb|U44018.1|HIVU44018 Human immunodeficiency virus type 1 tat mRNA, partial cds Length = 243 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tgaggagctcgtcgtcgctg 120 |||||||||||||||||||| Sbjct: 206 tgaggagctcgtcgtcgctg 187
>gb|U44017.1|HIVU44017 Human immunodeficiency virus type 1 tat mRNA, partial cds Length = 243 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tgaggagctcgtcgtcgctg 120 |||||||||||||||||||| Sbjct: 206 tgaggagctcgtcgtcgctg 187
>gb|U44012.1|HIVU44012 Human immunodeficiency virus type 1 tat mRNA, partial cds Length = 243 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tgaggagctcgtcgtcgctg 120 |||||||||||||||||||| Sbjct: 206 tgaggagctcgtcgtcgctg 187
>gb|U44011.1|HIVU44011 Human immunodeficiency virus type 1 tat mRNA, partial cds Length = 243 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tgaggagctcgtcgtcgctg 120 |||||||||||||||||||| Sbjct: 206 tgaggagctcgtcgtcgctg 187
>gb|U44009.1|HIVU44009 Human immunodeficiency virus type 1 tat mRNA, partial cds Length = 243 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tgaggagctcgtcgtcgctg 120 |||||||||||||||||||| Sbjct: 206 tgaggagctcgtcgtcgctg 187
>gb|U44008.1|HIVU44008 Human immunodeficiency virus type 1 tat mRNA, partial cds Length = 243 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tgaggagctcgtcgtcgctg 120 |||||||||||||||||||| Sbjct: 206 tgaggagctcgtcgtcgctg 187
>gb|U44002.1|HIVU44002 Human immunodeficiency virus type 1 tat mRNA, partial cds Length = 243 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tgaggagctcgtcgtcgctg 120 |||||||||||||||||||| Sbjct: 206 tgaggagctcgtcgtcgctg 187
>gb|U44001.1|HIVU44001 Human immunodeficiency virus type 1 tat mRNA, partial cds Length = 243 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tgaggagctcgtcgtcgctg 120 |||||||||||||||||||| Sbjct: 206 tgaggagctcgtcgtcgctg 187
>gb|U44000.1|HIVU44000 Human immunodeficiency virus type 1 tat mRNA, partial cds Length = 243 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tgaggagctcgtcgtcgctg 120 |||||||||||||||||||| Sbjct: 206 tgaggagctcgtcgtcgctg 187
>gb|U43998.1|HIVU43998 Human immunodeficiency virus type 1 tat mRNA, partial cds Length = 243 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tgaggagctcgtcgtcgctg 120 |||||||||||||||||||| Sbjct: 206 tgaggagctcgtcgtcgctg 187
>gb|U80472.1|HIVU80472 HIV-1 patient VE12 from Venezuela, sample 1995, tat protein (tat) gene, partial cds Length = 216 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 tgaggagctcgtcgtcgctg 120 |||||||||||||||||||| Sbjct: 179 tgaggagctcgtcgtcgctg 160
>dbj|D21159.1|RICASP1 Rice Osg4B gene for anther specific protein, complete cds (exon1, exon2) Length = 2429 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 agctcgtcgtcgctgccgct 125 |||||||||||||||||||| Sbjct: 704 agctcgtcgtcgctgccgct 685 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,230,806 Number of Sequences: 3902068 Number of extensions: 1230806 Number of successful extensions: 77416 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77089 Number of HSP's gapped (non-prelim): 326 length of query: 210 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 188 effective length of database: 17,147,199,772 effective search space: 3223673557136 effective search space used: 3223673557136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)