>gb|AF287276.1|AF287276 Hordeum vulgare chlorophyll a/b-binding protein precursor (Lhca4)
           mRNA, partial cds; nuclear gene for chloroplast product
          Length = 687

 Score =  289 bits (146), Expect = 2e-75
 Identities = 146/146 (100%)
 Strand = Plus / Plus

                                                                       
Query: 115 tcagcgtcgagcccccggttcctgggcgactccggccgcgtcgggctcgccaagtccacc 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   tcagcgtcgagcccccggttcctgggcgactccggccgcgtcgggctcgccaagtccacc 60

                                                                       
Query: 175 cgccgcgacgtcgccgtccaggccaaggggtcctggctccccggcctccagtcccctgcc 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cgccgcgacgtcgccgtccaggccaaggggtcctggctccccggcctccagtcccctgcc 120

                                     
Query: 235 tacctcgacggcagtctggcgggtga 260
           ||||||||||||||||||||||||||
Sbjct: 121 tacctcgacggcagtctggcgggtga 146

>gb|S68729.1| LHC Ib-20=light-harvesting complex I [Hordeum vulgare=barley,
           Prato, mRNA Chloroplast, 939 nt]
          Length = 939

 Score =  198 bits (100), Expect = 6e-48
 Identities = 113/116 (97%), Gaps = 1/116 (0%)
 Strand = Plus / Plus

                                                                       
Query: 146 ccggccgcgtcgggctcgccaag-tccacccgccgcgacgtcgccgtccaggccaagggg 204
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 43  ccggccgcgtcgggctcgccaaggtccacccgccgcgacgtcgccgtccaggccaagggg 102

                                                                   
Query: 205 tcctggctccccggcctccagtcccctgcctacctcgacggcagtctggcgggtga 260
           ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 103 tcctggctccccggcctccagtcccctgcctacctagacggcagtctggagggtga 158

>dbj|AP003027.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-25I9, complete
              sequence
          Length = 167067

 Score = 46.1 bits (23), Expect = 0.055
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 1      cacacacacgcgcgcactctcactctc 27
              ||||||||||||||||||||| |||||
Sbjct: 159314 cacacacacgcgcgcactctctctctc 159340

>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29
          Length = 310550

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 170    ccacccgccgcgacgtcgccgtccag 195
              |||||||||||| |||||||||||||
Sbjct: 301280 ccacccgccgcgtcgtcgccgtccag 301255

>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 106     ccggcggcgtcagcgtcgagc 126
               |||||||||||||||||||||
Sbjct: 1184518 ccggcggcgtcagcgtcgagc 1184538

>gb|AY095093.1| Drosophila melanogaster SD01674 full insert cDNA
          Length = 3618

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 1   cacacacacgcgcgcactctcactc 25
           ||||||||||||||| |||||||||
Sbjct: 597 cacacacacgcgcgctctctcactc 573

>ref|NM_078835.2| Drosophila melanogaster kekkon-1 CG12283-RA (kek1), mRNA
          Length = 3595

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 1   cacacacacgcgcgcactctcactc 25
           ||||||||||||||| |||||||||
Sbjct: 593 cacacacacgcgcgctctctcactc 569

>gb|AC009352.5| Drosophila melanogaster, chromosome 2L, region 34A-34A, BAC clone
             BACR11M13, complete sequence
          Length = 190301

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 1     cacacacacgcgcgcactctcactc 25
             ||||||||||||||| |||||||||
Sbjct: 12287 cacacacacgcgcgctctctcactc 12311

>gb|AC093095.1| Drosophila melanogaster, chromosome 2L, region 33F-34A, BAC clone
              BACR17H02, complete sequence
          Length = 167544

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 1      cacacacacgcgcgcactctcactc 25
              ||||||||||||||| |||||||||
Sbjct: 120013 cacacacacgcgcgctctctcactc 120037

>gb|AE003637.3| Drosophila melanogaster chromosome 2L, section 46 of 83 of the complete
              sequence
          Length = 222787

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 1      cacacacacgcgcgcactctcactc 25
              ||||||||||||||| |||||||||
Sbjct: 178450 cacacacacgcgcgctctctcactc 178474

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 42.1 bits (21), Expect = 0.86
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 170    ccacccgccgcgacgtcgccg 190
              |||||||||||||||||||||
Sbjct: 688896 ccacccgccgcgacgtcgccg 688916

>ref|XM_477205.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1534

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 162 cgccaagtccacccgccgcgacgtcgcc 189
           ||||||| || |||||||||||||||||
Sbjct: 776 cgccaaggccgcccgccgcgacgtcgcc 749

>ref|NM_001029980.1| Gallus gallus proline rich 5 (renal) (PRR5), mRNA
          Length = 2069

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  ccgcgctcccgtggccgctc 100
           ||||||||||||||||||||
Sbjct: 42  ccgcgctcccgtggccgctc 23

>ref|XM_748282.1| Aspergillus fumigatus Af293 hypothetical protein (Afu5g12780)
           partial mRNA
          Length = 999

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 144 ctccggccgcgtcgggctcgccaagtcc 171
           ||||||||||| ||||||||||| ||||
Sbjct: 273 ctccggccgcggcgggctcgccatgtcc 300

>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence
          Length = 1471779

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 141    cgactccggccgcgtcgggctcgc 164
              ||||||||||||||||| ||||||
Sbjct: 746809 cgactccggccgcgtcgcgctcgc 746786

>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 147     cggccgcgtcgggctcgcca 166
               ||||||||||||||||||||
Sbjct: 1316841 cggccgcgtcgggctcgcca 1316822

>gb|AC144489.2| Gasterosteus aculeatus clone CH213-2D11, complete sequence
          Length = 228976

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      cacacacacgcgcgcactct 20
              ||||||||||||||||||||
Sbjct: 177646 cacacacacgcgcgcactct 177627

>gb|AC107326.4| Drosophila melanogaster X BAC RP98-33A8 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 177096

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     acacacgcgcgcactctcac 23
             ||||||||||||||||||||
Sbjct: 48239 acacacgcgcgcactctcac 48220

>emb|CR353501.1| Gallus gallus finished cDNA, clone ChEST132n8
          Length = 2069

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 81  ccgcgctcccgtggccgctc 100
           ||||||||||||||||||||
Sbjct: 42  ccgcgctcccgtggccgctc 23

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 180     cgacgtcgccgtccaggcca 199
               ||||||||||||||||||||
Sbjct: 8420595 cgacgtcgccgtccaggcca 8420614

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 180      cgacgtcgccgtccaggcca 199
                ||||||||||||||||||||
Sbjct: 22389326 cgacgtcgccgtccaggcca 22389307



 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 162     cgccaagtccacccgccgcgacgtcgcc 189
               ||||||| || |||||||||||||||||
Sbjct: 7637021 cgccaaggccgcccgccgcgacgtcgcc 7637048

>gb|AC138624.4| Mus musculus BAC clone RP23-187N1 from chromosome 7, complete sequence
          Length = 226264

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 1     cacacacacgcgcgcactctcactctcc 28
             ||||||||||||||||| | ||||||||
Sbjct: 92587 cacacacacgcgcgcacacgcactctcc 92614

>dbj|AP004270.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0406F06
          Length = 144533

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 180   cgacgtcgccgtccaggcca 199
             ||||||||||||||||||||
Sbjct: 50393 cgacgtcgccgtccaggcca 50374

>dbj|AK109697.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-145-F02, full
            insert sequence
          Length = 2370

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 180  cgacgtcgccgtccaggcca 199
            ||||||||||||||||||||
Sbjct: 1578 cgacgtcgccgtccaggcca 1597

>dbj|AK068542.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155H18, full
           insert sequence
          Length = 1534

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 162 cgccaagtccacccgccgcgacgtcgcc 189
           ||||||| || |||||||||||||||||
Sbjct: 776 cgccaaggccgcccgccgcgacgtcgcc 749

>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 175     cgccgcgacgtcgccgtccaggcc 198
               ||||||| ||||||||||||||||
Sbjct: 2461449 cgccgcgtcgtcgccgtccaggcc 2461472

>dbj|AP004303.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0407H12
          Length = 167754

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 162    cgccaagtccacccgccgcgacgtcgcc 189
              ||||||| || |||||||||||||||||
Sbjct: 142431 cgccaaggccgcccgccgcgacgtcgcc 142458

>gb|AE003421.2| Drosophila melanogaster chromosome X, section 5 of 74 of the complete
              sequence
          Length = 304204

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 4      acacacgcgcgcactctcac 23
              ||||||||||||||||||||
Sbjct: 110549 acacacgcgcgcactctcac 110530

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 180     cgacgtcgccgtccaggcca 199
               ||||||||||||||||||||
Sbjct: 8420478 cgacgtcgccgtccaggcca 8420497

>emb|AL928775.2|CNS08CC5 Oryza sativa chromosome 12, . BAC OSJNBa0030N06 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 146444

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   cgacgtcgccgtccaggcca 199
             ||||||||||||||||||||
Sbjct: 27258 cgacgtcgccgtccaggcca 27277

>emb|AL021067.1|DMC123F11 Drosophila melanogaster cosmid clone 123F11
          Length = 23109

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 4   acacacgcgcgcactctcac 23
           ||||||||||||||||||||
Sbjct: 567 acacacgcgcgcactctcac 548

>dbj|AB078612.2| Leptothrix cholodnii orf1, lthA, lthB, lthC, orf5, orf6 genes,
            complete cds
          Length = 7608

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 63   gatgtcgtcggtcagtgccc 82
            ||||||||||||||||||||
Sbjct: 4132 gatgtcgtcggtcagtgccc 4113


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,564,232
Number of Sequences: 3902068
Number of extensions: 1564232
Number of successful extensions: 38298
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37938
Number of HSP's gapped (non-prelim): 359
length of query: 262
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 240
effective length of database: 17,147,199,772
effective search space: 4115327945280
effective search space used: 4115327945280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)