ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet59b08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_957809.1| Neurospora crassa OR74A hypothetical protein (N... 40 2.5
2ref|XM_325570.1| Neurospora crassa OR74A hypothetical protein (N... 40 2.5
3emb|CR696727.2|CNS0G0JN Tetraodon nigroviridis full-length cDNA 40 2.5
4emb|CR683606.2|CNS0FQF6 Tetraodon nigroviridis full-length cDNA 40 2.5
5gb|AC157319.2| Zea mays clone ZMMBBb-136E2, complete sequence 40 2.5
6gb|AF448145.2| Myxococcus xanthus che3 chemosensory regulator ge... 40 2.5
7emb|AL669898.17| Mouse DNA sequence from clone RP23-6C3 on chrom... 40 2.5
8gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome 38 10.0
9gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 38 10.0
10gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 38 10.0
11ref|XM_476360.1| Oryza sativa (japonica cultivar-group), mRNA 38 10.0
12ref|XM_414671.1| PREDICTED: Gallus gallus similar to jumonji dom... 38 10.0
13gb|BC031036.1| Homo sapiens transforming, acidic coiled-coil con... 38 10.0
14gb|BC010219.1| Homo sapiens transforming, acidic coiled-coil con... 38 10.0
15gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 38 10.0
16ref|XM_863115.1| PREDICTED: Canis familiaris hypothetical protei... 38 10.0
17gb|AY150217.1| Ambystoma tigrinum stebbensi virus, complete genome 38 10.0
18gb|AC098884.3| Mus musculus BAC clone RP23-122I23 from 3, comple... 38 10.0
19gb|AC122838.3| Mus musculus BAC clone RP23-191E1 from 3, complet... 38 10.0
20ref|XM_847017.1| PREDICTED: Canis familiaris similar to glutamat... 38 10.0
21gb|BC086868.1| Homo sapiens POM121-like protein, mRNA (cDNA clon... 38 10.0
22gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, compl... 38 10.0
23gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 38 10.0
24emb|Z49273.1|SC8564 S.cerevisiae chromosome XIII cosmid 8564 38 10.0
25emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genom... 38 10.0
26emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete ... 38 10.0
27gb|AC108484.25| Mus musculus strain 129/Sv clone ct7-293m19 map ... 38 10.0
28emb|AL929414.5| Mouse DNA sequence from clone RP23-222A19 on chr... 38 10.0
29emb|AL928645.6| Mouse DNA sequence from clone RP23-452N23 on chr... 38 10.0
30emb|BX324185.6| Zebrafish DNA sequence from clone DKEY-125M8 in ... 38 10.0
31dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 38 10.0
32gb|AC063960.10| Homo sapiens chromosome 10 clone RP11-105F10, co... 38 10.0
33gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 38 10.0
34dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 10.0
35gb|AC016642.7| Homo sapiens chromosome 5 clone RP11-479O16, comp... 38 10.0
36gb|AF528099.1| Homo sapiens transforming acidic coiled coil 2, l... 38 10.0
37gb|AF528098.1| Homo sapiens transforming acidic coiled coil 2, s... 38 10.0
38gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 38 10.0
39dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 38 10.0
40dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic D... 38 10.0
41dbj|AK066373.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 10.0
42emb|AL953878.19| Zebrafish DNA sequence from clone CH211-284P22 ... 38 10.0
43gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 38 10.0
44gb|AC140380.3| Mus musculus BAC clone RP23-175B15 from 3, comple... 38 10.0
45gb|AC150685.2| Mus musculus BAC clone RP23-239C12 from 19, compl... 38 10.0
46ref|NM_206862.1| Homo sapiens transforming, acidic coiled-coil c... 38 10.0
47ref|NM_206861.1| Homo sapiens transforming, acidic coiled-coil c... 38 10.0 
>ref|XM_957809.1| Neurospora crassa OR74A hypothetical protein (NCU05716.1) partial
           mRNA
          Length = 1083

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 141 ccgagcagcagcaggagccg 160
           ||||||||||||||||||||
Sbjct: 402 ccgagcagcagcaggagccg 421
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>ref|XM_325570.1| Neurospora crassa OR74A hypothetical protein (NCU05716.1) partial
           mRNA
          Length = 1083

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 141 ccgagcagcagcaggagccg 160
           ||||||||||||||||||||
Sbjct: 402 ccgagcagcagcaggagccg 421
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>emb|CR696727.2|CNS0G0JN Tetraodon nigroviridis full-length cDNA
          Length = 1358

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 138 gcgccgagcagcagcaggag 157
           ||||||||||||||||||||
Sbjct: 163 gcgccgagcagcagcaggag 144
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>emb|CR683606.2|CNS0FQF6 Tetraodon nigroviridis full-length cDNA
          Length = 1460

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 138 gcgccgagcagcagcaggag 157
           ||||||||||||||||||||
Sbjct: 164 gcgccgagcagcagcaggag 145
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>gb|AC157319.2| Zea mays clone ZMMBBb-136E2, complete sequence
          Length = 138186

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 138   gcgccgagcagcagcaggagccgctcat 165
             |||||||||||| |||||||| ||||||
Sbjct: 37220 gcgccgagcagctgcaggagcggctcat 37247
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>gb|AF448145.2| Myxococcus xanthus che3 chemosensory regulator gene cluster, complete
            sequence
          Length = 17906

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 139  cgccgagcagcagcaggagc 158
            ||||||||||||||||||||
Sbjct: 3038 cgccgagcagcagcaggagc 3019
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>emb|AL669898.17| Mouse DNA sequence from clone RP23-6C3 on chromosome X, complete
             sequence
          Length = 220201

 Score = 40.1 bits (20), Expect = 2.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   ccctccccttgctaactgaa 194
             ||||||||||||||||||||
Sbjct: 91302 ccctccccttgctaactgaa 91321
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>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 137    tgcgccgagcagcagcagg 155
              |||||||||||||||||||
Sbjct: 399945 tgcgccgagcagcagcagg 399963
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 139    cgccgagcagcagcaggag 157
              |||||||||||||||||||
Sbjct: 101615 cgccgagcagcagcaggag 101597
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 140     gccgagcagcagcaggagc 158
               |||||||||||||||||||
Sbjct: 2105092 gccgagcagcagcaggagc 2105110
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>ref|XM_476360.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1205

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 167 ctcgccttccctccccttg 185
           |||||||||||||||||||
Sbjct: 78  ctcgccttccctccccttg 60
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>ref|XM_414671.1| PREDICTED: Gallus gallus similar to jumonji domain containing 1B;
           putative zinc finger protein; chromosome 5 open reading
           frame 7 (LOC416355), mRNA
          Length = 4742

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 144 agcagcagcaggagccgct 162
           |||||||||||||||||||
Sbjct: 169 agcagcagcaggagccgct 151
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>gb|BC031036.1| Homo sapiens transforming, acidic coiled-coil containing protein 2,
           mRNA (cDNA clone IMAGE:4769062), with apparent retained
           intron
          Length = 641

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 84  gggcgtgtcctgctgcttc 102
           |||||||||||||||||||
Sbjct: 388 gggcgtgtcctgctgcttc 370
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>gb|BC010219.1| Homo sapiens transforming, acidic coiled-coil containing protein 2,
           mRNA (cDNA clone IMAGE:3450479), with apparent retained
           intron
          Length = 2639

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 84  gggcgtgtcctgctgcttc 102
           |||||||||||||||||||
Sbjct: 477 gggcgtgtcctgctgcttc 459
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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 133     cgcttgcgccgagcagcagcagg 155
               |||||||||| ||||||||||||
Sbjct: 3385981 cgcttgcgccaagcagcagcagg 3386003
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>ref|XM_863115.1| PREDICTED: Canis familiaris hypothetical protein LOC611357
           (LOC611357), mRNA
          Length = 1473

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 140 gccgagcagcagcaggagc 158
           |||||||||||||||||||
Sbjct: 289 gccgagcagcagcaggagc 307
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>gb|AY150217.1| Ambystoma tigrinum stebbensi virus, complete genome
          Length = 106332

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 141   ccgagcagcagcaggagcc 159
             |||||||||||||||||||
Sbjct: 86310 ccgagcagcagcaggagcc 86292
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>gb|AC098884.3| Mus musculus BAC clone RP23-122I23 from 3, complete sequence
          Length = 195428

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 41     ccatttttattcagccctctctc 63
              |||||||||||| ||||||||||
Sbjct: 124654 ccatttttattctgccctctctc 124632
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>gb|AC122838.3| Mus musculus BAC clone RP23-191E1 from 3, complete sequence
          Length = 196023

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 7      tgatctttttcagcttcgttgga 29
              |||||||||||||| ||||||||
Sbjct: 190231 tgatctttttcagcatcgttgga 190209
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>ref|XM_847017.1| PREDICTED: Canis familiaris similar to glutamate-ammonia ligase
            (LOC609703), mRNA
          Length = 1620

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 32   gagagctggccatttttat 50
            |||||||||||||||||||
Sbjct: 1471 gagagctggccatttttat 1453
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>gb|BC086868.1| Homo sapiens POM121-like protein, mRNA (cDNA clone IMAGE:30389699)
          Length = 3140

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 144 agcagcagcaggagccgct 162
           |||||||||||||||||||
Sbjct: 629 agcagcagcaggagccgct 647
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>gb|CP000272.1| Burkholderia xenovorans LB400 chromosome 3, complete sequence
          Length = 1471779

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 140    gccgagcagcagcaggagc 158
              |||||||||||||||||||
Sbjct: 473149 gccgagcagcagcaggagc 473167
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 72      caatggccgcgagggcgtg 90
               |||||||||||||||||||
Sbjct: 2890441 caatggccgcgagggcgtg 2890459
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>emb|Z49273.1|SC8564 S.cerevisiae chromosome XIII cosmid 8564
          Length = 12974

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 36   gctggccatttttattcag 54
            |||||||||||||||||||
Sbjct: 4960 gctggccatttttattcag 4942
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>emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genome; segment 12/16
          Length = 348068

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 138    gcgccgagcagcagcagga 156
              |||||||||||||||||||
Sbjct: 215566 gcgccgagcagcagcagga 215584
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>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29
          Length = 339650

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 138   gcgccgagcagcagcagga 156
             |||||||||||||||||||
Sbjct: 84595 gcgccgagcagcagcagga 84577
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>gb|AC108484.25| Mus musculus strain 129/Sv clone ct7-293m19 map 19, complete sequence
          Length = 170321

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 30   ccgagagctggccatttttattc 52
            |||||||||||||| ||||||||
Sbjct: 1199 ccgagagctggccacttttattc 1177
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>emb|AL929414.5| Mouse DNA sequence from clone RP23-222A19 on chromosome 11, complete
             sequence
          Length = 153928

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 44    tttttattcagccctctctctagcttg 70
             ||||||||||||| |||| ||||||||
Sbjct: 46692 tttttattcagccttctccctagcttg 46718
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>emb|AL928645.6| Mouse DNA sequence from clone RP23-452N23 on chromosome 4 Contains part
              of the Ptprd gene for receptor type protein tyrosine
              phosphatase D, complete sequence
          Length = 172513

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 40     gccatttttattcagccct 58
              |||||||||||||||||||
Sbjct: 134306 gccatttttattcagccct 134324
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>emb|BX324185.6| Zebrafish DNA sequence from clone DKEY-125M8 in linkage group 7,
             complete sequence
          Length = 83928

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 37    ctggccatttttattcagc 55
             |||||||||||||||||||
Sbjct: 11069 ctggccatttttattcagc 11051
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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 139     cgccgagcagcagcaggag 157
               |||||||||||||||||||
Sbjct: 1649107 cgccgagcagcagcaggag 1649125
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>gb|AC063960.10| Homo sapiens chromosome 10 clone RP11-105F10, complete sequence
          Length = 174677

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 84     gggcgtgtcctgctgcttc 102
              |||||||||||||||||||
Sbjct: 139122 gggcgtgtcctgctgcttc 139140
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 138     gcgccgagcagcagcagga 156
               |||||||||||||||||||
Sbjct: 1442433 gcgccgagcagcagcagga 1442415
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7,
              complete sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 167    ctcgccttccctccccttg 185
              |||||||||||||||||||
Sbjct: 149108 ctcgccttccctccccttg 149126
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>gb|AC016642.7| Homo sapiens chromosome 5 clone RP11-479O16, complete sequence
          Length = 160907

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     gatctttttcagcttcgtt 26
             |||||||||||||||||||
Sbjct: 72125 gatctttttcagcttcgtt 72143
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>gb|AF528099.1| Homo sapiens transforming acidic coiled coil 2, long isoform
           (TACC2) mRNA, complete cds
          Length = 9708

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 84  gggcgtgtcctgctgcttc 102
           |||||||||||||||||||
Sbjct: 458 gggcgtgtcctgctgcttc 440
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>gb|AF528098.1| Homo sapiens transforming acidic coiled coil 2, short isoform
           (TACC2) mRNA, complete cds
          Length = 4146

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 84  gggcgtgtcctgctgcttc 102
           |||||||||||||||||||
Sbjct: 458 gggcgtgtcctgctgcttc 440
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 128     cgacgcgcttgcgccgagc 146
               |||||||||||||||||||
Sbjct: 1796688 cgacgcgcttgcgccgagc 1796670
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 140     gccgagcagcagcaggagc 158
               |||||||||||||||||||
Sbjct: 6707403 gccgagcagcagcaggagc 6707421
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>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:B1026C12
          Length = 170240

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 167    ctcgccttccctccccttg 185
              |||||||||||||||||||
Sbjct: 148407 ctcgccttccctccccttg 148425
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>dbj|AK066373.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013062G10, full
           insert sequence
          Length = 1205

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 167 ctcgccttccctccccttg 185
           |||||||||||||||||||
Sbjct: 78  ctcgccttccctccccttg 60
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>emb|AL953878.19| Zebrafish DNA sequence from clone CH211-284P22 in linkage group 3,
             complete sequence
          Length = 158134

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 143   gagcagcagcaggagccgc 161
             |||||||||||||||||||
Sbjct: 84596 gagcagcagcaggagccgc 84578
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 137     tgcgccgagcagcagcagg 155
               |||||||||||||||||||
Sbjct: 1060900 tgcgccgagcagcagcagg 1060918
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>gb|AC140380.3| Mus musculus BAC clone RP23-175B15 from 3, complete sequence
          Length = 206396

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 7     tgatctttttcagcttcgttgga 29
             |||||||||||||| ||||||||
Sbjct: 60227 tgatctttttcagcatcgttgga 60249
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>gb|AC150685.2| Mus musculus BAC clone RP23-239C12 from 19, complete sequence
          Length = 194627

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 30    ccgagagctggccatttttattc 52
             |||||||||||||| ||||||||
Sbjct: 63096 ccgagagctggccacttttattc 63118
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>ref|NM_206862.1| Homo sapiens transforming, acidic coiled-coil containing protein 2
           (TACC2), transcript variant 1, mRNA
          Length = 9706

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 84  gggcgtgtcctgctgcttc 102
           |||||||||||||||||||
Sbjct: 477 gggcgtgtcctgctgcttc 459
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>ref|NM_206861.1| Homo sapiens transforming, acidic coiled-coil containing protein 2
           (TACC2), transcript variant 2, mRNA
          Length = 4144

 Score = 38.2 bits (19), Expect = 10.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 84  gggcgtgtcctgctgcttc 102
           |||||||||||||||||||
Sbjct: 477 gggcgtgtcctgctgcttc 459


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,207,013
Number of Sequences: 3902068
Number of extensions: 2207013
Number of successful extensions: 171835
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 170740
Number of HSP's gapped (non-prelim): 1095
length of query: 200
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 178
effective length of database: 17,147,199,772
effective search space: 3052201559416
effective search space used: 3052201559416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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