ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet59b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000147.1| Rhodobacter sphaeroides 2.4.1 plasmid D, complete... 42 0.66
2gb|AC011705.11| Drosophila melanogaster clone BACR10C18, complet... 40 2.6
3emb|AL356059.27| Human DNA sequence from clone RP11-192G4 on chr... 40 2.6
4emb|AL022576.2|HS20J23 Human DNA sequence from clone RP1-20J23 o... 40 2.6
5gb|AY057373.1| Drosophila melanogaster innexin6 (inx6) mRNA, com... 40 2.6
6ref|NM_132146.1| Drosophila melanogaster inx6 CG17063-RA (inx6),... 40 2.6
7gb|AC041040.6| Homo sapiens chromosome 8, clone RP11-513O13, com... 40 2.6
8gb|AE003572.4| Drosophila melanogaster chromosome X, section 67 ... 40 2.6
9emb|AL844561.5| Mouse DNA sequence from clone RP23-214D2 on chro... 40 2.6

>gb|CP000147.1| Rhodobacter sphaeroides 2.4.1 plasmid D, complete sequence
          Length = 100828

 Score = 42.1 bits (21), Expect = 0.66
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 12    ccaccaccacctcgcgctcgc 32
             |||||||||||||||||||||
Sbjct: 53590 ccaccaccacctcgcgctcgc 53570



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>gb|AC011705.11| Drosophila melanogaster clone BACR10C18, complete sequence
          Length = 170975

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   gaggtcgatcgggatggcgg 197
             ||||||||||||||||||||
Sbjct: 72792 gaggtcgatcgggatggcgg 72773



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>emb|AL356059.27| Human DNA sequence from clone RP11-192G4 on chromosome 1 Contains part
             of the COL24A1 gene for collagen type XXIV alpha 1,
             complete sequence
          Length = 76418

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 37    cagcagatatttactcagtctctg 60
             ||||||||||||||| ||||||||
Sbjct: 50514 cagcagatatttacttagtctctg 50491



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>emb|AL022576.2|HS20J23 Human DNA sequence from clone RP1-20J23 on chromosome Xq26.2-27.2
              Contains a ras-related C3 botulinum toxin substrate 1 (rho
              family, small GTP binding protein Rac1) (RAC1) pseudogene
              (LOC286472) and a CpG island, complete sequence
          Length = 137111

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    cactacacttactgtggtct 131
              ||||||||||||||||||||
Sbjct: 127564 cactacacttactgtggtct 127583



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>gb|AY057373.1| Drosophila melanogaster innexin6 (inx6) mRNA, complete cds
          Length = 1493

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 178 gaggtcgatcgggatggcgg 197
           ||||||||||||||||||||
Sbjct: 269 gaggtcgatcgggatggcgg 288



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>ref|NM_132146.1| Drosophila melanogaster inx6 CG17063-RA (inx6), mRNA
          Length = 1446

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 178 gaggtcgatcgggatggcgg 197
           ||||||||||||||||||||
Sbjct: 235 gaggtcgatcgggatggcgg 254



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>gb|AC041040.6| Homo sapiens chromosome 8, clone RP11-513O13, complete sequence
          Length = 155301

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 59    tggtgcactgcacaagatcgcacc 82
             ||||||||||||| ||||||||||
Sbjct: 69663 tggtgcactgcacgagatcgcacc 69686



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>gb|AE003572.4| Drosophila melanogaster chromosome X, section 67 of 74 of the complete
             sequence
          Length = 91383

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 178   gaggtcgatcgggatggcgg 197
             ||||||||||||||||||||
Sbjct: 41346 gaggtcgatcgggatggcgg 41327



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>emb|AL844561.5| Mouse DNA sequence from clone RP23-214D2 on chromosome 2, complete
             sequence
          Length = 203361

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    gctcggcagcagatatttac 50
             ||||||||||||||||||||
Sbjct: 14177 gctcggcagcagatatttac 14158


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,607,356
Number of Sequences: 3902068
Number of extensions: 1607356
Number of successful extensions: 126866
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 126848
Number of HSP's gapped (non-prelim): 18
length of query: 206
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 184
effective length of database: 17,147,199,772
effective search space: 3155084758048
effective search space used: 3155084758048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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