>R1A3_SOLDE (Q6L440) Putative late blight resistance protein homolog R1A-3|
          Length = 760

 Score = 33.9 bits (76), Expect = 0.11
 Identities = 12/36 (33%), Positives = 25/36 (69%)
 Frame = +1

Query: 145 MKKVVLKLDLHDDRQKQKALKAVSGLHGIDNMGVDM 252
           +KK++L+ D+  D++   A K ++ L G+D++ +DM
Sbjct: 696 IKKMILQFDISHDKEIDNAFKRLASLPGVDSISIDM 731

>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22|
          Length = 1010

 Score = 33.5 bits (75), Expect = 0.15
 Identities = 21/63 (33%), Positives = 32/63 (50%)
 Frame = +3

Query: 54  PTDRARTPSLHINPQISSPCRRSPLFGRRRYEEGGAEAGPARRQAEAEGAQGRLRPPRHR 233
           PT R+++PS   + +  SP + SP     R     A + P RR + +   +G+  PPRHR
Sbjct: 86  PTPRSQSPSRR-SVRSPSPRQGSPARRVDRSSSPRARSPPPRRHSRSPPLRGQPPPPRHR 144

Query: 234 QYG 242
             G
Sbjct: 145 DAG 147

>VE2_CRPVK (P03121) Probable regulatory protein E2|
          Length = 390

 Score = 30.8 bits (68), Expect = 0.96
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +3

Query: 132 GRRRYEEGGAEAGPA--RRQA---EAEGAQGRLRPPRHRQYGR 245
           GRRR    G +  PA  R+QA   EA+ A G +RPP     GR
Sbjct: 239 GRRRSRSPGVQRRPAKQRKQAAPDEADSAAGDIRPPAPEDVGR 281

>SNUT1_RAT (Q5XIW8) U4/U6.U5 tri-snRNP-associated protein 1 (Squamous cell|
           carcinoma antigen recognized by T-cells 1) (SART-1)
           (rSART-1)
          Length = 806

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 18/31 (58%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +3

Query: 135 RRRYEEGGAEAGPARRQAEAE---GAQGRLR 218
           R+R  E GAE G  RR AEAE   GA GR R
Sbjct: 53  RKRSRERGAERGSGRRGAEAEARSGAHGRER 83

>WASF3_HUMAN (Q9UPY6) Wiskott-Aldrich syndrome protein family member 3|
           (WASP-family protein member 3) (WAVE-3 protein)
           (Verprolin homology domain-containing protein 3)
          Length = 502

 Score = 30.4 bits (67), Expect = 1.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 65  STHAVPPHQPTNFITLPAKPSVWPP 139
           STHA PPH P+  + + A P   PP
Sbjct: 377 STHAAPPHPPSTGLLVTAPPPPGPP 401

>SIR2_LEIMA (Q25337) NAD-dependent deacetylase SIR2 homolog (EC 3.5.1.-)|
           (LMSIR2RP)
          Length = 381

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 22/65 (33%), Positives = 27/65 (41%)
 Frame = +3

Query: 48  DRPTDRARTPSLHINPQISSPCRRSPLFGRRRYEEGGAEAGPARRQAEAEGAQGRLRPPR 227
           D P D     ++    + SS   RSP    RR EEGG E G +    E E A        
Sbjct: 254 DDPLDTIHDDAVAKEGRSSSSQSRSPSASARR-EEGGTEDGSSSPNEEVEDASTSSSSDG 312

Query: 228 HRQYG 242
           + QYG
Sbjct: 313 YGQYG 317

>H2B1_STRPU (P06145) Histone H2B.1, sperm|
          Length = 139

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +3

Query: 90  NPQISSPCRRSPLFGRRRYEEGGAEAGPARRQAEAEGAQGRLRPPRHRQYG 242
           +P   SP +RSP  G  +  +G    G ARR+    GA  R R  R   YG
Sbjct: 5   SPTKRSPTKRSPQKGAGKGGKGSKRGGKARRRG---GAAVRRRRRRRESYG 52

>CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22|
          Length = 831

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +3

Query: 24  SSVPAHRVDRPTDRARTPSLHINPQISSPCRRSPLFGRRRY-EEGGAEAGPARRQAEAEG 200
           S  P  R  R +D +R+PS     + S   R      RRRY ++  + + P  R+  ++ 
Sbjct: 745 SPSPPPRRRRYSDDSRSPSPPPRRRYSGDSRSPSPPPRRRYADDSRSPSPPPHRRRYSDD 804

Query: 201 AQGRLRPPRHRQY 239
           ++    PPR R+Y
Sbjct: 805 SRSPSPPPRRRRY 817

>SNUT1_MOUSE (Q9Z315) U4/U6.U5 tri-snRNP-associated protein 1 (Squamous cell|
           carcinoma antigen recognized by T-cells 1) (SART-1)
           (mSART-1) (Hypoxia-associated factor)
          Length = 806

 Score = 29.3 bits (64), Expect = 2.8
 Identities = 17/31 (54%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +3

Query: 135 RRRYEEGGAEAGPARRQAEAE---GAQGRLR 218
           R+R  E G+E G  RR AEAE   GA GR R
Sbjct: 53  RKRSRERGSERGSGRRGAEAEARSGAHGRER 83

>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide isoform 4)
            (Brain calcium channel I) (BI)
          Length = 2424

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +3

Query: 51   RPTDRARTPSLHINPQISSPCRRSPLFGRRRYEEGGAEAGPARRQAEAEGAQGRLRPP 224
            R  DRAR PS H    + +   R P  G +  E   +  GP  R+++ +  +G L PP
Sbjct: 864  RHHDRARDPSAHAAAGLDA---RRPWAGSQEAEL--SREGPYGRESDHQAREGGLEPP 916

>VP40_HCMVA (P16753) Capsid protein P40 [Contains: Assemblin (Protease) (EC|
           3.4.21.97); Capsid assembly protein; Gene UL80 protein;
           Gene UL80.5 protein; C-terminal peptide]
          Length = 708

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = +3

Query: 75  PSLHINPQISSPCRRSPLFGRRRYEEGGAEAGPARRQAEAEGAQGRLRPPRHRQYGRG 248
           PSLH  P    P   SP + RRR   GG +  P+  +    G +G+ +  +HR  G G
Sbjct: 452 PSLH--PSYPVPPPPSPAYYRRRDSPGGMDEPPSGWERYDGGHRGQSQ-KQHRHGGSG 506

>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 17/59 (28%), Positives = 26/59 (44%)
 Frame = +3

Query: 51  RPTDRARTPSLHINPQISSPCRRSPLFGRRRYEEGGAEAGPARRQAEAEGAQGRLRPPR 227
           RP+ R RTP   + P       RSP  GRRR     + +G +   + +       +PP+
Sbjct: 318 RPSPRRRTPPRRMPPPPRHRRSRSP--GRRRRRSSASLSGSSSSSSSSRSRSPPKKPPK 374

>PCD15_MOUSE (Q99PJ1) Protocadherin-15 precursor|
          Length = 1943

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +2

Query: 32   SCASS*SPHRQSTHAVPPHQPTNFITLPAKPSVWPP 139
            +CAS   P R S   + PH P+ F  LP  P   PP
Sbjct: 1726 TCASDTEPKRNSFE-IAPHPPSIFAPLPHPPLPRPP 1760

>FA38A_HUMAN (Q92508) Protein FAM38A|
          Length = 2035

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +3

Query: 54   PTDRARTPSLHINPQISSPCRRSPLFGRRRYEEGGAEAGPARRQAE 191
            PTD    P + + P+ +   RR  L  RRR +EG A  G A  +AE
Sbjct: 1364 PTDGTPEPQVELRPRDT---RRISLRFRRRKKEGPARKGAAAIEAE 1406

>IF3_MYXXA (P48516) Translation initiation factor IF-3|
          Length = 246

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
 Frame = +3

Query: 60  DRARTPSL---HINPQISSPCRRSPLFGRRRYEEGGAEAGPARRQAEAEGAQGRLRP 221
           DRART  L    I+P  S P  +   +G+ +YEE    +   R Q      + +LRP
Sbjct: 45  DRARTEGLDLVEISPMASPPVCKIMDYGKFKYEEKKKASEAKRAQVTVLLKEVKLRP 101

>WASF3_MOUSE (Q8VHI6) Wiskott-Aldrich syndrome protein family member 3|
           (WASP-family protein member 3) (WAVE-3 protein)
          Length = 501

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 65  STHAVPPHQPTNFITLPAKPSVWPP 139
           ST+  PPHQP+  +   A P   PP
Sbjct: 377 STYPTPPHQPSTGLLATAPPPPGPP 401

>BTBD7_HUMAN (Q9P203) BTB/POZ domain-containing protein 7|
          Length = 1132

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = +3

Query: 15  YHTSSVPAHRVDRPTDRARTPSLHINPQISSPCRRSPLFGRRRYEEGG 158
           YH  + P H   +   + R PS H +   S PC  S LF  R   + G
Sbjct: 765 YHPPATPIHNQLKAGWKQRPPSQHPSRSFSYPCNHS-LFHSRTAPKAG 811


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,392,919
Number of Sequences: 219361
Number of extensions: 523260
Number of successful extensions: 2080
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2077
length of database: 80,573,946
effective HSP length: 60
effective length of database: 67,412,286
effective search space used: 1617894864
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)