ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet58h02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_474267.1| Oryza sativa (japonica cultivar-group), predic... 94 3e-16
2emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4,... 78 2e-11
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
4dbj|AK106330.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 2e-11
5emb|AL732340.3| Oryza sativa genomic DNA, chromosome 4, BAC clon... 78 2e-11
6dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.013
7dbj|AK071491.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.013
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 48 0.013
9emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112... 48 0.013
10gb|AC169129.2| Mus musculus BAC clone RP23-259N3 from chromosome... 46 0.053
11gb|AC099625.11| Mus musculus chromosome 7, clone RP24-360F21, co... 46 0.053
12ref|XM_521608.1| PREDICTED: Pan troglodytes similar to Beta-1 ad... 42 0.83
13ref|XM_606904.2| PREDICTED: Bos taurus similar to coatomer prote... 42 0.83
14ref|XM_973818.1| PREDICTED: Mus musculus hypothetical protein LO... 42 0.83
15ref|XM_905339.2| PREDICTED: Mus musculus hypothetical LOC631071,... 42 0.83
16gb|CP000137.1| Rhizobium etli CFN 42 plasmid p42e, complete sequ... 42 0.83
17ref|NM_001037815.1| Bos taurus coatomer protein complex, subunit... 42 0.83
18gb|BC111322.1| Bos taurus cDNA clone MGC:134159 IMAGE:8042396, c... 42 0.83
19gb|AC163287.4| Mus musculus BAC clone RP23-279E21 from chromosom... 42 0.83
20emb|X70019.1|BTGAMCOP B. taurus mRNA for gamma-COP 42 0.83
21emb|X92987.1|BPGAMMCOP B.primigenius mRNA for coat protein gamma... 42 0.83
22gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence 40 3.3
23gb|AC084047.3| Trypanosoma brucei chromosome 6 clone RPCI93-5F5,... 40 3.3
24gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome 40 3.3
25emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 3.3
26ref|XM_821764.1| Trypanosoma brucei TREU927 clone RPCI93-5F5 hyp... 40 3.3
27emb|Z67753.1|OSCHLPLXX Odontella sinensis complete chloroplast g... 40 3.3
28emb|BX842646.1| Bdellovibrio bacteriovorus complete genome, stra... 40 3.3 
>ref|XM_474267.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 414

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 80/91 (87%)
 Strand = Plus / Plus

                                                                       
Query: 145 atgaagaaggtggtgctgaagctggacctgcacgacgacaggcagaagcagaaggcgctc 204
           ||||||||| | ||||||||||||||||||||||| |||| | | |||||||||||| ||
Sbjct: 7   atgaagaagcttgtgctgaagctggacctgcacgatgacaaggataagcagaaggcgatc 66

                                          
Query: 205 aaggccgtctccggcctccacggcatcgaca 235
           || |||||||||  ||||||||| |||||||
Sbjct: 67  aaagccgtctccaccctccacgggatcgaca 97
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>emb|AL606619.3|OSJN00032 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043A12,
             complete sequence
          Length = 190432

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 63/71 (88%)
 Strand = Plus / Plus

                                                                         
Query: 157   gtgctgaagctggacctgcacgacgacaggcagaagcagaaggcgctcaaggccgtctcc 216
             ||||||||||||||||||||||| |||| | | |||||||||||| |||| |||||||||
Sbjct: 26154 gtgctgaagctggacctgcacgatgacaaggataagcagaaggcgatcaaagccgtctcc 26213

                        
Query: 217   ggcctccacgg 227
               |||||||||
Sbjct: 26214 accctccacgg 26224
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 63/71 (88%)
 Strand = Plus / Plus

                                                                            
Query: 157      gtgctgaagctggacctgcacgacgacaggcagaagcagaaggcgctcaaggccgtctcc 216
                ||||||||||||||||||||||| |||| | | |||||||||||| |||| |||||||||
Sbjct: 34114772 gtgctgaagctggacctgcacgatgacaaggataagcagaaggcgatcaaagccgtctcc 34114831

                           
Query: 217      ggcctccacgg 227
                  |||||||||
Sbjct: 34114832 accctccacgg 34114842
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>dbj|AK106330.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-F06, full
           insert sequence
          Length = 2304

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 63/71 (88%)
 Strand = Plus / Plus

                                                                       
Query: 157 gtgctgaagctggacctgcacgacgacaggcagaagcagaaggcgctcaaggccgtctcc 216
           ||||||||||||||||||||||| |||| | | |||||||||||| |||| |||||||||
Sbjct: 361 gtgctgaagctggacctgcacgatgacaaggataagcagaaggcgatcaaagccgtctcc 420

                      
Query: 217 ggcctccacgg 227
             |||||||||
Sbjct: 421 accctccacgg 431
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>emb|AL732340.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: B0811B10, complete
             sequence
          Length = 99356

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 63/71 (88%)
 Strand = Plus / Plus

                                                                         
Query: 157   gtgctgaagctggacctgcacgacgacaggcagaagcagaaggcgctcaaggccgtctcc 216
             ||||||||||||||||||||||| |||| | | |||||||||||| |||| |||||||||
Sbjct: 31832 gtgctgaagctggacctgcacgatgacaaggataagcagaaggcgatcaaagccgtctcc 31891

                        
Query: 217   ggcctccacgg 227
               |||||||||
Sbjct: 31892 accctccacgg 31902
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                        
Query: 161      tgaagctggacctgcacgacgacaggcagaagcagaaggcgctcaaggccgtctcc 216
                |||||||||||||||| ||| ||| | | |||||||||||  | ||||||||||||
Sbjct: 13222117 tgaagctggacctgcatgacaacaaggacaagcagaaggccatgaaggccgtctcc 13222172
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>dbj|AK071491.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023098J19, full
           insert sequence
          Length = 1289

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                   
Query: 161 tgaagctggacctgcacgacgacaggcagaagcagaaggcgctcaaggccgtctcc 216
           |||||||||||||||| ||| ||| | | |||||||||||  | ||||||||||||
Sbjct: 281 tgaagctggacctgcatgacaacaaggacaagcagaaggccatgaaggccgtctcc 336
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 48/56 (85%)
 Strand = Plus / Plus

                                                                        
Query: 161      tgaagctggacctgcacgacgacaggcagaagcagaaggcgctcaaggccgtctcc 216
                |||||||||||||||| ||| ||| | | |||||||||||  | ||||||||||||
Sbjct: 13176391 tgaagctggacctgcatgacaacaaggacaagcagaaggccatgaaggccgtctcc 13176446
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>emb|AL732381.3|CNS08C94 Oryza sativa chromosome 12, . BAC OJ1112_F01 of library Monsanto from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 193499

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                      
Query: 161    tgaagctggacctgcacgacgacaggcagaagcagaaggcgctcaaggccgtctcc 216
              |||||||||||||||| ||| ||| | | |||||||||||  | ||||||||||||
Sbjct: 108626 tgaagctggacctgcatgacaacaaggacaagcagaaggccatgaaggccgtctcc 108571
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>gb|AC169129.2| Mus musculus BAC clone RP23-259N3 from chromosome 7, complete sequence
          Length = 190493

 Score = 46.1 bits (23), Expect = 0.053
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 184   aggcagaagcagaaggcgctcaaggcc 210
             |||||||||||||||| ||||||||||
Sbjct: 85310 aggcagaagcagaaggagctcaaggcc 85336
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>gb|AC099625.11| Mus musculus chromosome 7, clone RP24-360F21, complete sequence
          Length = 166818

 Score = 46.1 bits (23), Expect = 0.053
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 184    aggcagaagcagaaggcgctcaaggcc 210
              |||||||||||||||| ||||||||||
Sbjct: 139467 aggcagaagcagaaggagctcaaggcc 139441
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>ref|XM_521608.1| PREDICTED: Pan troglodytes similar to Beta-1 adrenergic receptor
           (Beta-1 adrenoceptor) (Beta-1 adrenoreceptor)
           (LOC466206), mRNA
          Length = 1236

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 187 cagaagcagaaggcgctcaag 207
           |||||||||||||||||||||
Sbjct: 754 cagaagcagaaggcgctcaag 774
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>ref|XM_606904.2| PREDICTED: Bos taurus similar to coatomer protein complex, subunit
            gamma (LOC617629), mRNA
          Length = 2124

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 186  gcagaagcagaaggcgctcaa 206
            |||||||||||||||||||||
Sbjct: 2052 gcagaagcagaaggcgctcaa 2072
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>ref|XM_973818.1| PREDICTED: Mus musculus hypothetical protein LOC669229 (LOC669229),
           mRNA
          Length = 2314

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 145 atgaagaaggtggtgctgaagctggacct 173
           |||||||||||||||||| ||| ||||||
Sbjct: 784 atgaagaaggtggtgctggagcaggacct 812
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>ref|XM_905339.2| PREDICTED: Mus musculus hypothetical LOC631071, transcript variant
           1 (LOC631071), mRNA
          Length = 2312

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 145 atgaagaaggtggtgctgaagctggacct 173
           |||||||||||||||||| ||| ||||||
Sbjct: 783 atgaagaaggtggtgctggagcaggacct 811
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>gb|CP000137.1| Rhizobium etli CFN 42 plasmid p42e, complete sequence
          Length = 505334

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 103    catcaccttgccggcgaagcc 123
              |||||||||||||||||||||
Sbjct: 494170 catcaccttgccggcgaagcc 494190
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>ref|NM_001037815.1| Bos taurus coatomer protein complex, subunit gamma 2 (COPG2), mRNA
          Length = 2876

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 186  gcagaagcagaaggcgctcaa 206
            |||||||||||||||||||||
Sbjct: 1666 gcagaagcagaaggcgctcaa 1686
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>gb|BC111322.1| Bos taurus cDNA clone MGC:134159 IMAGE:8042396, complete cds
          Length = 2876

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 186  gcagaagcagaaggcgctcaa 206
            |||||||||||||||||||||
Sbjct: 1666 gcagaagcagaaggcgctcaa 1686
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>gb|AC163287.4| Mus musculus BAC clone RP23-279E21 from chromosome 8, complete sequence
          Length = 201346

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 145    atgaagaaggtggtgctgaagctggacct 173
              |||||||||||||||||| ||| ||||||
Sbjct: 123161 atgaagaaggtggtgctggagcaggacct 123189
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>emb|X70019.1|BTGAMCOP B. taurus mRNA for gamma-COP
          Length = 1971

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 186 gcagaagcagaaggcgctcaa 206
           |||||||||||||||||||||
Sbjct: 675 gcagaagcagaaggcgctcaa 695
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>emb|X92987.1|BPGAMMCOP B.primigenius mRNA for coat protein gamma-cop
          Length = 3013

 Score = 42.1 bits (21), Expect = 0.83
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 186  gcagaagcagaaggcgctcaa 206
            |||||||||||||||||||||
Sbjct: 1717 gcagaagcagaaggcgctcaa 1737
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>gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence
          Length = 1618915

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 82     tccacatcaacccacaaatt 101
              ||||||||||||||||||||
Sbjct: 862230 tccacatcaacccacaaatt 862211
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>gb|AC084047.3| Trypanosoma brucei chromosome 6 clone RPCI93-5F5, complete sequence
          Length = 152595

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    tccacatcaacccacaaatt 101
             ||||||||||||||||||||
Sbjct: 71955 tccacatcaacccacaaatt 71936
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>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome
          Length = 2650701

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    gctatgaagaaggtggtgct 161
              ||||||||||||||||||||
Sbjct: 990579 gctatgaagaaggtggtgct 990598
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>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 192    gcagaaggcgctcaaggccg 211
              ||||||||||||||||||||
Sbjct: 294434 gcagaaggcgctcaaggccg 294453
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>ref|XM_821764.1| Trypanosoma brucei TREU927 clone RPCI93-5F5 hypothetical protein
           (Tb927.6.2870) partial mRNA
          Length = 1398

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 82  tccacatcaacccacaaatt 101
           ||||||||||||||||||||
Sbjct: 926 tccacatcaacccacaaatt 907
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>emb|Z67753.1|OSCHLPLXX Odontella sinensis complete chloroplast genome
          Length = 119704

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   aagaaggtggtgctgaagct 167
             ||||||||||||||||||||
Sbjct: 20854 aagaaggtggtgctgaagct 20835
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>emb|BX842646.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 1/11
          Length = 349761

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 143    ctatgaagaaggtggtgctg 162
              ||||||||||||||||||||
Sbjct: 149727 ctatgaagaaggtggtgctg 149708


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,002,342
Number of Sequences: 3902068
Number of extensions: 2002342
Number of successful extensions: 41272
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41153
Number of HSP's gapped (non-prelim): 119
length of query: 254
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 232
effective length of database: 17,147,199,772
effective search space: 3978150347104
effective search space used: 3978150347104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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