ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet58f11 |
|---|---|
| Clone Library Name | barley_pub |
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 77.4 bits (189), Expect = 8e-15 Identities = 41/103 (39%), Positives = 62/103 (60%), Gaps = 2/103 (1%) Frame = +3 Query: 12 SAYSP--NCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWAT 185 +A++P SDARV+ D TG+S+GYGFVSF N+ DA++AI + G WLG RQIR NWAT Sbjct: 124 AAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 183 Query: 186 KGANSGEDQLASDSKSIVDVNNNFTENAKQKSNEDAPENNPLY 314 + + + S++K + + + N+ +P N +Y Sbjct: 184 RKPPAPKSTYESNTKQL---------SYDEVVNQSSPSNCTVY 217 Score = 38.5 bits (88), Expect = 0.004 Identities = 23/83 (27%), Positives = 42/83 (50%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FS P C + +++ D T + Y FV F + A +A+ +NG + ++++ NWAT Sbjct: 27 FSQIGP-CKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATT 83 Query: 189 GANSGEDQLASDSKSIVDVNNNF 257 ++ +D +S S N+F Sbjct: 84 PSSQKKDTSSSTVVSTQRSQNHF 106 Score = 32.0 bits (71), Expect = 0.40 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +3 Query: 75 RGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNW 179 +GY FV F + + A AI +NG + ++C W Sbjct: 249 KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYW 283
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 76.6 bits (187), Expect = 1e-14 Identities = 37/77 (48%), Positives = 53/77 (68%), Gaps = 2/77 (2%) Frame = +3 Query: 12 SAYSP--NCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWAT 185 +A++P SDARV+ D TG+S+GYGFVSF N+ DA++AI + G WLG RQIR NWAT Sbjct: 124 AAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWAT 183 Query: 186 KGANSGEDQLASDSKSI 236 + + + S++K + Sbjct: 184 RKPPAPKSTYESNTKQL 200 Score = 36.6 bits (83), Expect = 0.016 Identities = 20/71 (28%), Positives = 38/71 (53%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FS P C + +++ D T + Y FV F + A +A+ +NG + ++++ NWAT Sbjct: 27 FSQIGP-CKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATT 83 Query: 189 GANSGEDQLAS 221 ++ +D +S Sbjct: 84 PSSQKKDTSSS 94 Score = 31.6 bits (70), Expect = 0.52 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +3 Query: 75 RGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNW 179 +GY FV F + + A AI +NG + ++C W Sbjct: 249 KGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYW 283
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 75.9 bits (185), Expect = 2e-14 Identities = 41/103 (39%), Positives = 62/103 (60%), Gaps = 2/103 (1%) Frame = +3 Query: 12 SAYSP--NCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWAT 185 SA++P SDARV+ D TG+S+GYGFVSF N+ DA++AI + G WLG RQIR NWAT Sbjct: 115 SAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWAT 174 Query: 186 KGANSGEDQLASDSKSIVDVNNNFTENAKQKSNEDAPENNPLY 314 + + + +++K + + N+ +P+N +Y Sbjct: 175 RKPPAPKSTQENNTKQL---------RFEDVVNQSSPKNCTVY 208 Score = 33.9 bits (76), Expect = 0.10 Identities = 14/43 (32%), Positives = 26/43 (60%) Frame = +3 Query: 81 YGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGED 209 Y FV F +DA +A+ +NG + ++++ NWAT ++ +D Sbjct: 50 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKD 92 Score = 31.2 bits (69), Expect = 0.68 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +3 Query: 75 RGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNW 179 +GY FV F + A AI +NG + ++C W Sbjct: 240 KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 274
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 75.9 bits (185), Expect = 2e-14 Identities = 41/103 (39%), Positives = 62/103 (60%), Gaps = 2/103 (1%) Frame = +3 Query: 12 SAYSP--NCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWAT 185 SA++P SDARV+ D TG+S+GYGFVSF N+ DA++AI + G WLG RQIR NWAT Sbjct: 132 SAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWAT 191 Query: 186 KGANSGEDQLASDSKSIVDVNNNFTENAKQKSNEDAPENNPLY 314 + + + +++K + + N+ +P+N +Y Sbjct: 192 RKPPAPKSTQETNTKQL---------RFEDVVNQSSPKNCTVY 225 Score = 33.9 bits (76), Expect = 0.10 Identities = 14/43 (32%), Positives = 26/43 (60%) Frame = +3 Query: 81 YGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGED 209 Y FV F +DA +A+ +NG + ++++ NWAT ++ +D Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQKKD 109 Score = 31.2 bits (69), Expect = 0.68 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = +3 Query: 75 RGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNW 179 +GY FV F + A AI +NG + ++C W Sbjct: 257 KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 291
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 67.0 bits (162), Expect = 1e-11 Identities = 30/62 (48%), Positives = 40/62 (64%) Frame = +3 Query: 24 PNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSG 203 P+ VMWD +TG SRGYGFVSF +Q DAQ+A++ + G L R +R NWA K N+ Sbjct: 185 PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNN 244 Query: 204 ED 209 + Sbjct: 245 NN 246 Score = 41.2 bits (95), Expect = 7e-04 Identities = 23/88 (26%), Positives = 43/88 (48%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQ 212 ++ ++M D K ++ Y FV + DA A+ LNG + N ++ NWA + S D Sbjct: 101 ANIKIMID-KNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQSSSDD 159 Query: 213 LASDSKSIVDVNNNFTENAKQKSNEDAP 296 + + + D+N N + + + +D P Sbjct: 160 --TFNLFVGDLNVNVDDETLRNAFKDFP 185
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 64.7 bits (156), Expect = 6e-11 Identities = 29/86 (33%), Positives = 52/86 (60%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLAS 221 ++M+D +TGRS+GY F+ FR+ + + SA+ +LNG LG+R ++C +++ SG Q Sbjct: 48 KMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDISGVSQQQQ 107 Query: 222 DSKSIVDVNNNFTENAKQKSNEDAPE 299 + ++ NNN N +N + P+ Sbjct: 108 QQYNNINGNNN--NNGNNNNNSNGPD 131
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 55.5 bits (132), Expect = 3e-08 Identities = 30/70 (42%), Positives = 44/70 (62%), Gaps = 3/70 (4%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGED---Q 212 R+M D KTG S GYGFV F ++ DA AIN+LNG+ + N++I+ ++A G D Sbjct: 108 RIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFARPGGEQLRDTNLY 167 Query: 213 LASDSKSIVD 242 + + S+SI D Sbjct: 168 VTNLSRSITD 177
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 55.1 bits (131), Expect = 4e-08 Identities = 31/95 (32%), Positives = 53/95 (55%) Frame = +3 Query: 6 FFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWAT 185 F + Y+ + S A+++ DQ TG S+GYGFV F N + Q A++++ G++L R I+ Sbjct: 183 FINRYA-STSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKV---- 237 Query: 186 KGANSGEDQLASDSKSIVDVNNNFTENAKQKSNED 290 G SG+ Q S NN++ ++ +NE+ Sbjct: 238 -GPTSGQQQHVSG-------NNDYNRSSSSLNNEN 264 Score = 28.9 bits (63), Expect = 3.4 Identities = 14/51 (27%), Positives = 26/51 (50%) Frame = +3 Query: 84 GFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDSKSI 236 GFV + ++ A++AI + G + N ++R +W + Q A S S+ Sbjct: 351 GFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRSAKQTALLQQAMLSNSL 401
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 53.9 bits (128), Expect = 1e-07 Identities = 25/49 (51%), Positives = 36/49 (73%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 +ARV++D+ +GRS+G+GFV+ + Q+ Q AIN LNG L RQIR + A Sbjct: 285 EARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLDGRQIRVSEA 333 Score = 40.0 bits (92), Expect = 0.001 Identities = 18/50 (36%), Positives = 27/50 (54%) Frame = +3 Query: 27 NCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCN 176 N V++D+ TGRSRG+GFV+ + ++A NG R +R N Sbjct: 124 NVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVN 173
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 53.9 bits (128), Expect = 1e-07 Identities = 28/69 (40%), Positives = 42/69 (60%) Frame = +3 Query: 3 AFFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 A F A P + R+M D KTG S GY FV F ++ D+Q AI LNG+ + N++++ ++A Sbjct: 145 ALFRAIGP-INTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 203 Query: 183 TKGANSGED 209 G S +D Sbjct: 204 RPGGESIKD 212
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 53.9 bits (128), Expect = 1e-07 Identities = 28/69 (40%), Positives = 42/69 (60%) Frame = +3 Query: 3 AFFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 A F A P + R+M D KTG S GY FV F ++ D+Q AI LNG+ + N++++ ++A Sbjct: 143 ALFRAIGP-INTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYA 201 Query: 183 TKGANSGED 209 G S +D Sbjct: 202 RPGGESIKD 210
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 53.5 bits (127), Expect = 1e-07 Identities = 28/69 (40%), Positives = 42/69 (60%) Frame = +3 Query: 3 AFFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 A F P + R+M D KTG S GY FV F ++ DAQ+AI LNG+ + N++++ ++A Sbjct: 103 ALFRTCGP-INTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYA 161 Query: 183 TKGANSGED 209 G S +D Sbjct: 162 RPGGESIKD 170
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 52.4 bits (124), Expect = 3e-07 Identities = 27/69 (39%), Positives = 42/69 (60%) Frame = +3 Query: 3 AFFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 A F P + R+M D KTG S GY FV F ++ DAQ+AI +NG+ + N++++ ++A Sbjct: 120 ALFRTCGP-INTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITVRNKRLKVSYA 178 Query: 183 TKGANSGED 209 G S +D Sbjct: 179 RPGGESIKD 187
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 52.0 bits (123), Expect = 4e-07 Identities = 27/69 (39%), Positives = 40/69 (57%) Frame = +3 Query: 3 AFFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 A F P + R+M D KTG S GY FV F + D+Q AI LNG+ + N++++ ++A Sbjct: 128 ALFRTIGP-INTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYA 186 Query: 183 TKGANSGED 209 G S +D Sbjct: 187 RPGGESIKD 195
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 51.6 bits (122), Expect = 5e-07 Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA-T 185 FS Y P S V++DQ+TGRSRG+ FV F D++ A+ NG+ L R+IR +++ T Sbjct: 137 FSRYGP-LSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSIT 195 Query: 186 KGANS 200 K A++ Sbjct: 196 KRAHT 200
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 51.6 bits (122), Expect = 5e-07 Identities = 28/65 (43%), Positives = 42/65 (64%), Gaps = 1/65 (1%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA-T 185 FS Y P S V++DQ+TGRSRG+ FV F D++ A+ NG+ L R+IR +++ T Sbjct: 139 FSRYGP-LSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERANGMELDGRRIRVDYSIT 197 Query: 186 KGANS 200 K A++ Sbjct: 198 KRAHT 202
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 51.6 bits (122), Expect = 5e-07 Identities = 26/60 (43%), Positives = 38/60 (63%) Frame = +3 Query: 6 FFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWAT 185 F S Y+ +C A++M D +T SRGYGFV F ++ D +SA+ ++ G G+R IR AT Sbjct: 206 FASRYN-SCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLAT 264 Score = 41.6 bits (96), Expect = 5e-04 Identities = 19/35 (54%), Positives = 24/35 (68%) Frame = +3 Query: 75 RGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNW 179 +G GFV F N+Q A+ AIN L G LGN +IR +W Sbjct: 338 KGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSW 372
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 51.2 bits (121), Expect = 6e-07 Identities = 23/52 (44%), Positives = 37/52 (71%) Frame = +3 Query: 27 NCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 N DA+V++D+ +GRSRG+GFV++ + ++ AI+ LNG+ L R IR + A Sbjct: 232 NVVDAKVVYDRDSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSIRVSAA 283 Score = 43.1 bits (100), Expect = 2e-04 Identities = 19/50 (38%), Positives = 30/50 (60%) Frame = +3 Query: 27 NCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCN 176 N V++D+ TGRSRG+GFV+ +++ ++A NG + R IR N Sbjct: 112 NVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN 161
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 51.2 bits (121), Expect = 6e-07 Identities = 23/52 (44%), Positives = 37/52 (71%) Frame = +3 Query: 27 NCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 N DA+V++D+ +GRSRG+GFV++ + ++ AI+ LNG+ L R IR + A Sbjct: 233 NVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAA 284 Score = 41.6 bits (96), Expect = 5e-04 Identities = 18/50 (36%), Positives = 30/50 (60%) Frame = +3 Query: 27 NCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCN 176 N V++D+ +GRSRG+GFV+ +++ ++A NG + R IR N Sbjct: 113 NVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVN 162
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 50.8 bits (120), Expect = 8e-07 Identities = 23/49 (46%), Positives = 37/49 (75%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 +ARV++D+ +GRS+G+GFV++ + Q+ Q+AI L+G L RQIR + A Sbjct: 232 EARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280 Score = 42.0 bits (97), Expect = 4e-04 Identities = 19/50 (38%), Positives = 29/50 (58%) Frame = +3 Query: 27 NCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCN 176 N V++D+ TGRSRG+GFV+ + + ++A NG L R +R N Sbjct: 116 NVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVN 165
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 50.8 bits (120), Expect = 8e-07 Identities = 24/56 (42%), Positives = 35/56 (62%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSG 203 D++V+ D++TGRSRG+GFV+F ++Q AI ++NG L R I N A G Sbjct: 36 DSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNGKELDGRNITVNQAQSRGGGG 91
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 50.8 bits (120), Expect = 8e-07 Identities = 27/62 (43%), Positives = 40/62 (64%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FS++ P S+ V+ D++T RSRG+GF++F N + A A+ +NG L RQIR + A K Sbjct: 26 FSSFGP-ISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRAMNGESLDGRQIRVDHAGK 84 Query: 189 GA 194 A Sbjct: 85 SA 86
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 50.8 bits (120), Expect = 8e-07 Identities = 23/47 (48%), Positives = 36/47 (76%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCN 176 DA+V+ D++TGRSRG+GFV+F ++ A +AI++++G L R IR N Sbjct: 63 DAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVN 109
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 50.4 bits (119), Expect = 1e-06 Identities = 22/56 (39%), Positives = 38/56 (67%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSG 203 D++++ D++TGRSRG+GFV+F++++ + AI+++NG L R I N A G Sbjct: 34 DSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNGKELDGRTITVNEAQSRGGGG 89
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 50.1 bits (118), Expect = 1e-06 Identities = 27/62 (43%), Positives = 40/62 (64%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FS++ P S+ V+ D++T RSRG+GF++F N + A A+ +NG L RQIR + A K Sbjct: 26 FSSFGP-ISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAMNGESLDGRQIRVDHAGK 84 Query: 189 GA 194 A Sbjct: 85 SA 86
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 50.1 bits (118), Expect = 1e-06 Identities = 22/57 (38%), Positives = 38/57 (66%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSG 203 +D++++ D++TGRSRG+GFV+F++++ + AI +NG L R I N A + G Sbjct: 33 TDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNGQELDGRNITVNEAQSRGSGG 89
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 49.7 bits (117), Expect = 2e-06 Identities = 23/57 (40%), Positives = 41/57 (71%), Gaps = 1/57 (1%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA-TKGANSG 203 D++++ D++TGRSRG+GFV+F++++ + AI +NG L R I N A ++G+ +G Sbjct: 36 DSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQSRGSGAG 92
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 49.7 bits (117), Expect = 2e-06 Identities = 24/69 (34%), Positives = 38/69 (55%) Frame = +3 Query: 45 VMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASD 224 +M D TGRS+GYGF++F + + A+ A+ LNG L R +R T+ + G D D Sbjct: 294 LMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTDITFPD 353 Query: 225 SKSIVDVNN 251 +D+ + Sbjct: 354 GDQELDLGS 362
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 49.7 bits (117), Expect = 2e-06 Identities = 25/65 (38%), Positives = 40/65 (61%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FS Y D++++ D++TGRSRG+GFV+F++++ + AI +NG L R I N A Sbjct: 28 FSQYG-EVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNGQDLDGRSITVNEAQS 86 Query: 189 GANSG 203 + G Sbjct: 87 RGSGG 91
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 49.3 bits (116), Expect = 2e-06 Identities = 24/75 (32%), Positives = 44/75 (58%) Frame = +3 Query: 66 GRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDSKSIVDV 245 GRS+GYGFV F ++ AQ+AI+ LNG+ L ++Q+ + +D+ S+S ++ Sbjct: 169 GRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVR----RQDRARSESGAVPSF 224 Query: 246 NNNFTENAKQKSNED 290 N + +N ++ +D Sbjct: 225 TNVYVKNLPKEITDD 239 Score = 38.9 bits (89), Expect = 0.003 Identities = 19/53 (35%), Positives = 34/53 (64%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 FS Y N + +VM + + G SRG+GFV++ N ++A A+ ++NG +G + + Sbjct: 348 FSEYG-NVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPL 398 Score = 36.6 bits (83), Expect = 0.016 Identities = 22/59 (37%), Positives = 34/59 (57%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGED 209 S A VM DQ +G SR +GFV+F + + A A+ +NG+ LG + A K ++ E+ Sbjct: 252 SSAVVMKDQ-SGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEE 309 Score = 32.7 bits (73), Expect = 0.23 Identities = 16/36 (44%), Positives = 22/36 (61%) Frame = +3 Query: 63 TGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIR 170 T RS GY +V+F N +DA A+ LN + +R IR Sbjct: 81 THRSLGYAYVNFANPEDASRAMESLNYAPIRDRPIR 116
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 49.3 bits (116), Expect = 2e-06 Identities = 27/58 (46%), Positives = 39/58 (67%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGE 206 S+ V+ D++T RSRG+GFV+F N DA+ A+ +NG + RQIR + A G +SGE Sbjct: 32 SEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAMNGKSVDGRQIRVDQA--GKSSGE 87
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 49.3 bits (116), Expect = 2e-06 Identities = 22/58 (37%), Positives = 35/58 (60%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQ 212 ARV++++ T RSRGYG+V F N+ A+ AI ++ G + R I C+ +T D+ Sbjct: 197 ARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDR 254 Score = 40.4 bits (93), Expect = 0.001 Identities = 16/53 (30%), Positives = 34/53 (64%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANS 200 R+ +T + +G+G+V F N +DA+ A++ L G ++ NR +R ++++ N+ Sbjct: 297 RIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPNN 349
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 49.3 bits (116), Expect = 2e-06 Identities = 27/58 (46%), Positives = 39/58 (67%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 FS+++ ++ARVM ++ TGRSRGYGFV+F ++ A SAI+ +NG L I N A Sbjct: 51 FSSFN-GVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNGQELNGFNISVNVA 107
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 49.3 bits (116), Expect = 2e-06 Identities = 30/98 (30%), Positives = 52/98 (53%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FS P S R+++D++TG+ +GYGF +++Q+ A SA+ +LNG R +R + A Sbjct: 36 FSEVGPVVS-FRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 94 Query: 189 GANSGEDQLASDSKSIVDVNNNFTENAKQKSNEDAPEN 302 N E + +++ + + S EDAPE+ Sbjct: 95 EKNKEELKSLGTGAPVIE-----SPYGESISPEDAPES 127
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 49.3 bits (116), Expect = 2e-06 Identities = 27/64 (42%), Positives = 41/64 (64%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FS Y S+ V+ D++T RSRG+GFV+F N DA+ A+ +NG + RQIR + A K Sbjct: 26 FSKYG-QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK 84 Query: 189 GANS 200 +++ Sbjct: 85 SSDN 88
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 49.3 bits (116), Expect = 2e-06 Identities = 27/64 (42%), Positives = 41/64 (64%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FS Y S+ V+ D++T RSRG+GFV+F N DA+ A+ +NG + RQIR + A K Sbjct: 26 FSKYG-QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK 84 Query: 189 GANS 200 +++ Sbjct: 85 SSDN 88
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 49.3 bits (116), Expect = 2e-06 Identities = 27/64 (42%), Positives = 41/64 (64%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FS Y S+ V+ D++T RSRG+GFV+F N DA+ A+ +NG + RQIR + A K Sbjct: 26 FSKYG-QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK 84 Query: 189 GANS 200 +++ Sbjct: 85 SSDN 88
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 49.3 bits (116), Expect = 2e-06 Identities = 27/64 (42%), Positives = 41/64 (64%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FS Y S+ V+ D++T RSRG+GFV+F N DA+ A+ +NG + RQIR + A K Sbjct: 26 FSKYG-QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK 84 Query: 189 GANS 200 +++ Sbjct: 85 SSDN 88
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 49.3 bits (116), Expect = 2e-06 Identities = 27/64 (42%), Positives = 41/64 (64%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FS Y S+ V+ D++T RSRG+GFV+F N DA+ A+ +NG + RQIR + A K Sbjct: 26 FSKYG-QISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGK 84 Query: 189 GANS 200 +++ Sbjct: 85 SSDN 88
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 48.9 bits (115), Expect = 3e-06 Identities = 30/98 (30%), Positives = 52/98 (53%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FS P S R+++D++TG+ +GYGF +++Q+ A SA+ +LNG R +R + A Sbjct: 36 FSEVGPVVS-FRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 94 Query: 189 GANSGEDQLASDSKSIVDVNNNFTENAKQKSNEDAPEN 302 N E + +++ + + S EDAPE+ Sbjct: 95 EKNKEELKSLGTGAPVIE-----SPYGETISPEDAPES 127
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 48.9 bits (115), Expect = 3e-06 Identities = 30/98 (30%), Positives = 52/98 (53%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FS P S R+++D++TG+ +GYGF +++Q+ A SA+ +LNG R +R + A Sbjct: 36 FSEVGPVVS-FRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 94 Query: 189 GANSGEDQLASDSKSIVDVNNNFTENAKQKSNEDAPEN 302 N E + +++ + + S EDAPE+ Sbjct: 95 EKNKEELKSLGTGAPVIE-----SPYGETISPEDAPES 127
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 48.9 bits (115), Expect = 3e-06 Identities = 30/98 (30%), Positives = 52/98 (53%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FS P S R+++D++TG+ +GYGF +++Q+ A SA+ +LNG R +R + A Sbjct: 36 FSEVGPVVS-FRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAAS 94 Query: 189 GANSGEDQLASDSKSIVDVNNNFTENAKQKSNEDAPEN 302 N E + +++ + + S EDAPE+ Sbjct: 95 EKNKEELKSLGTGAPVIE-----SPYGETISPEDAPES 127
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 48.9 bits (115), Expect = 3e-06 Identities = 23/56 (41%), Positives = 34/56 (60%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSG 203 D++V+ D++TGRSRG+GFV+F ++ AI ++NG L R I N A G Sbjct: 36 DSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNGKELDGRNITVNQAQSRGGGG 91
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 48.5 bits (114), Expect = 4e-06 Identities = 32/106 (30%), Positives = 56/106 (52%), Gaps = 1/106 (0%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 F + P+C+ A+++ D TG SR YGFV F ++++ Q A+ + G R +R + A+ Sbjct: 202 FRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASP 261 Query: 189 GANSGEDQLASDSK-SIVDVNNNFTENAKQKSNEDAPENNPLYRTV 323 + + +A+DS IV T + ++ N+D +PL TV Sbjct: 262 KSRA---SIAADSALGIVP-----TSTSNRQPNQDLCSMDPLNTTV 299 Score = 32.0 bits (71), Expect = 0.40 Identities = 19/55 (34%), Positives = 27/55 (49%) Frame = +3 Query: 75 RGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDSKSIV 239 +G GFV + + A+ AIN + G +G IR W G N+ S S+S V Sbjct: 332 KGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAW---GHNTLPVSALSQSQSQV 383
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 48.5 bits (114), Expect = 4e-06 Identities = 27/87 (31%), Positives = 47/87 (54%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLAS 221 R+++D++TG+ +GYGF +++Q+ A SA+ +LNG R +R + A N E + Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLG 105 Query: 222 DSKSIVDVNNNFTENAKQKSNEDAPEN 302 + I+D + EDAPE+ Sbjct: 106 PAAPIID-----SPYGDPIDPEDAPES 127
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 48.5 bits (114), Expect = 4e-06 Identities = 24/58 (41%), Positives = 37/58 (63%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 FS Y P +D +++DQ++ RSRG+ FV F N DA+ A NG+ L R+IR +++ Sbjct: 138 FSKYGP-IADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 194
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 48.5 bits (114), Expect = 4e-06 Identities = 24/58 (41%), Positives = 37/58 (63%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 FS Y P +D +++DQ++ RSRG+ FV F N DA+ A NG+ L R+IR +++ Sbjct: 138 FSKYGP-IADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 194
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 48.5 bits (114), Expect = 4e-06 Identities = 24/58 (41%), Positives = 37/58 (63%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 FS Y P +D +++DQ++ RSRG+ FV F N DA+ A NG+ L R+IR +++ Sbjct: 138 FSKYGP-IADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 194
>GRP7_ARATH (Q03250) Glycine-rich RNA-binding protein 7| Length = 176 Score = 48.5 bits (114), Expect = 4e-06 Identities = 22/56 (39%), Positives = 37/56 (66%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSG 203 D++++ D++TGRSRG+GFV+F++++ + AI +NG L R I N A + G Sbjct: 36 DSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGMNGQDLDGRSITVNEAQSRGSGG 91
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 48.5 bits (114), Expect = 4e-06 Identities = 27/87 (31%), Positives = 47/87 (54%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLAS 221 R+++D++TG+ +GYGF +++Q+ A SA+ +LNG R +R + A N E + Sbjct: 46 RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEELKSLG 105 Query: 222 DSKSIVDVNNNFTENAKQKSNEDAPEN 302 + I+D + EDAPE+ Sbjct: 106 PAAPIID-----SPYGDPIDPEDAPES 127
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 48.5 bits (114), Expect = 4e-06 Identities = 24/66 (36%), Positives = 38/66 (57%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FSA+ ++M D TG S+GY F++F + + +AI +NG +L NR I ++A K Sbjct: 120 FSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFK 179 Query: 189 GANSGE 206 + GE Sbjct: 180 KDSKGE 185 Score = 39.3 bits (90), Expect = 0.002 Identities = 19/44 (43%), Positives = 29/44 (65%) Frame = +3 Query: 54 DQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWAT 185 D+ TG+ +GYGFV F +++DA AI +N + L + IR N A+ Sbjct: 47 DRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKAS 90
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 48.5 bits (114), Expect = 4e-06 Identities = 26/60 (43%), Positives = 38/60 (63%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FSA+ N +VM D TGRSRG+GFV++ N ++AQ A++++NG + R I A K Sbjct: 211 FSAFG-NTLSVKVMMDD-TGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQK 268 Score = 39.7 bits (91), Expect = 0.002 Identities = 22/53 (41%), Positives = 32/53 (60%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 FSA+ N +V+ D+ SRGYGFV F Q+ A AI +NG+ L +R++ Sbjct: 119 FSAFG-NILSCKVVCDEHG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKV 168 Score = 36.2 bits (82), Expect = 0.021 Identities = 21/60 (35%), Positives = 32/60 (53%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FS P S RV D T RS GY +++F+ DA+ A++ +N + R IR W+ + Sbjct: 31 FSPAGPIMS-IRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQR 89 Score = 33.5 bits (75), Expect = 0.14 Identities = 17/45 (37%), Positives = 28/45 (62%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNG 143 FS Y + A+VM + G S+G+GFV F + ++A A+ ++NG Sbjct: 314 FSPYG-TITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNG 355
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 47.8 bits (112), Expect = 7e-06 Identities = 23/48 (47%), Positives = 34/48 (70%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 ARV++D++TGRSRG+GFV+ ++ + AI +L+G L R IR N A Sbjct: 259 ARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVA 306 Score = 33.9 bits (76), Expect = 0.10 Identities = 18/56 (32%), Positives = 31/56 (55%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGE 206 A V++++ T +SRG+GFV+ ++A+ A+ N + R + N K A GE Sbjct: 165 AEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVN---KAARRGE 217
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 47.8 bits (112), Expect = 7e-06 Identities = 20/45 (44%), Positives = 34/45 (75%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIR 170 DA+V++D+ +GRSRG+GFV++ + ++ +AI L+G+ L R IR Sbjct: 216 DAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIR 260 Score = 44.3 bits (103), Expect = 8e-05 Identities = 19/50 (38%), Positives = 31/50 (62%) Frame = +3 Query: 27 NCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCN 176 N V++D+ TGRSRG+GFV+ ++++ ++A NG L R +R N Sbjct: 112 NVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN 161
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 47.8 bits (112), Expect = 7e-06 Identities = 25/60 (41%), Positives = 38/60 (63%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 F + P S +VM D+ +G+S+G+GFVSF +DAQ A++++NG L +QI A K Sbjct: 211 FGKFGPALS-VKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268 Score = 41.2 bits (95), Expect = 7e-04 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FSA+ N +V+ D+ S+GYGFV F Q+ A+ AI +NG+ L +R++ K Sbjct: 119 FSAFG-NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG-RFK 174 Query: 189 GANSGEDQLASDSKSIVDVN-NNFTEN 266 E +L + +K +V NF E+ Sbjct: 175 SRKEREAELGARAKEFTNVYIKNFGED 201 Score = 35.0 bits (79), Expect = 0.047 Identities = 20/60 (33%), Positives = 32/60 (53%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FS P S RV D T RS GY +V+F+ DA+ A++ +N + + +R W+ + Sbjct: 31 FSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 89 Score = 34.7 bits (78), Expect = 0.062 Identities = 15/37 (40%), Positives = 26/37 (70%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNG 143 + A+VM + GRS+G+GFV F + ++A A+ ++NG Sbjct: 321 TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 47.8 bits (112), Expect = 7e-06 Identities = 25/60 (41%), Positives = 38/60 (63%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 F + P S +VM D+ +G+S+G+GFVSF +DAQ A++++NG L +QI A K Sbjct: 211 FGKFGPALS-VKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268 Score = 41.2 bits (95), Expect = 7e-04 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FSA+ N +V+ D+ S+GYGFV F Q+ A+ AI +NG+ L +R++ K Sbjct: 119 FSAFG-NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG-RFK 174 Query: 189 GANSGEDQLASDSKSIVDVN-NNFTEN 266 E +L + +K +V NF E+ Sbjct: 175 SQKEREAELGARAKEFTNVYIKNFGED 201 Score = 35.0 bits (79), Expect = 0.047 Identities = 20/60 (33%), Positives = 32/60 (53%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FS P S RV D T RS GY +V+F+ DA+ A++ +N + + +R W+ + Sbjct: 31 FSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 89 Score = 34.7 bits (78), Expect = 0.062 Identities = 15/37 (40%), Positives = 26/37 (70%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNG 143 + A+VM + GRS+G+GFV F + ++A A+ ++NG Sbjct: 321 TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 47.8 bits (112), Expect = 7e-06 Identities = 25/60 (41%), Positives = 38/60 (63%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 F + P S +VM D+ +G+S+G+GFVSF +DAQ A++++NG L +QI A K Sbjct: 211 FGKFGPALS-VKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268 Score = 42.0 bits (97), Expect = 4e-04 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FSA+ N +V+ D+ S+GYGFV F Q+ A+ AI +NG+ L +R++ K Sbjct: 119 FSAFG-NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG-RFK 174 Query: 189 GANSGEDQLASDSKSIVDVN-NNFTENAKQKSNED 290 E +L + +K +V NF E+ + +D Sbjct: 175 SRKEREAELGARAKEFTNVYIKNFGEDMDDERLKD 209 Score = 35.0 bits (79), Expect = 0.047 Identities = 20/60 (33%), Positives = 32/60 (53%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FS P S RV D T RS GY +V+F+ DA+ A++ +N + + +R W+ + Sbjct: 31 FSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 89 Score = 34.7 bits (78), Expect = 0.062 Identities = 15/37 (40%), Positives = 26/37 (70%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNG 143 + A+VM + GRS+G+GFV F + ++A A+ ++NG Sbjct: 321 TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 47.8 bits (112), Expect = 7e-06 Identities = 25/60 (41%), Positives = 38/60 (63%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 F + P S +VM D+ +G+S+G+GFVSF +DAQ A++++NG L +QI A K Sbjct: 211 FGKFGPALS-VKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268 Score = 42.0 bits (97), Expect = 4e-04 Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 1/95 (1%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FSA+ N +V+ D+ S+GYGFV F Q+ A+ AI +NG+ L +R++ K Sbjct: 119 FSAFG-NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG-RFK 174 Query: 189 GANSGEDQLASDSKSIVDVN-NNFTENAKQKSNED 290 E +L + +K +V NF E+ + +D Sbjct: 175 SRKEREAELGARAKEFTNVYIKNFGEDMDDERLKD 209 Score = 35.0 bits (79), Expect = 0.047 Identities = 20/60 (33%), Positives = 32/60 (53%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FS P S RV D T RS GY +V+F+ DA+ A++ +N + + +R W+ + Sbjct: 31 FSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 89 Score = 34.7 bits (78), Expect = 0.062 Identities = 15/37 (40%), Positives = 26/37 (70%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNG 143 + A+VM + GRS+G+GFV F + ++A A+ ++NG Sbjct: 321 TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 47.8 bits (112), Expect = 7e-06 Identities = 25/60 (41%), Positives = 38/60 (63%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 F + P S +VM D+ +G+S+G+GFVSF +DAQ A++++NG L +QI A K Sbjct: 211 FGKFGPALS-VKVMTDE-SGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268 Score = 36.6 bits (83), Expect = 0.016 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Frame = +3 Query: 72 SRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDSKSIVDVN- 248 S+GYGFV F + A+ AI +NG+ L R++ K E +L + +K +V Sbjct: 137 SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVG-QFKSRKEREAELGARAKEFPNVYI 195 Query: 249 NNFTENAKQKSNED 290 NF E+ + +D Sbjct: 196 KNFGEDMDDERLKD 209 Score = 36.2 bits (82), Expect = 0.021 Identities = 18/45 (40%), Positives = 30/45 (66%), Gaps = 2/45 (4%) Frame = +3 Query: 15 AYSP--NCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNG 143 A+SP + A+VM + GRS+G+GFV F + ++A A+ ++NG Sbjct: 313 AFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 47.8 bits (112), Expect = 7e-06 Identities = 20/45 (44%), Positives = 34/45 (75%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIR 170 DA+V++D+ +GRSRG+GFV++ + ++ +AI L+G+ L R IR Sbjct: 222 DAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIR 266 Score = 44.3 bits (103), Expect = 8e-05 Identities = 19/50 (38%), Positives = 31/50 (62%) Frame = +3 Query: 27 NCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCN 176 N V++D+ TGRSRG+GFV+ ++++ ++A NG L R +R N Sbjct: 112 NVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVN 161
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 47.8 bits (112), Expect = 7e-06 Identities = 21/56 (37%), Positives = 38/56 (67%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSG 203 D++++ D+++GRSRG+GFV+F++++ + AI ++NG L R I N A + G Sbjct: 34 DSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNGKELDGRVITVNEAQSRGSGG 89
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 47.4 bits (111), Expect = 9e-06 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 2/63 (3%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK--GANSGEDQL 215 ++M D +TGRS+GYGF++F + + A+ A+ LNG L R ++ T+ A+S L Sbjct: 280 QLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFL 339 Query: 216 ASD 224 SD Sbjct: 340 DSD 342
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 47.4 bits (111), Expect = 9e-06 Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 2/63 (3%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK--GANSGEDQL 215 ++M D +TGRS+GYGF++F + + A+ A+ LNG L R ++ T+ A+S L Sbjct: 280 QLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERTDASSASSFL 339 Query: 216 ASD 224 SD Sbjct: 340 DSD 342
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 47.0 bits (110), Expect = 1e-05 Identities = 23/56 (41%), Positives = 38/56 (67%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGED 209 +++ D+ TG+S GYGFV++ + +DA+ AIN LNGL L + I+ ++A + S D Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 124 Score = 39.7 bits (91), Expect = 0.002 Identities = 18/51 (35%), Positives = 32/51 (62%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWAT 185 ++ +V+ D T + +G+GFV+ N +A AI LNG LG+R ++ ++ T Sbjct: 303 TNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 353 Score = 37.7 bits (86), Expect = 0.007 Identities = 17/35 (48%), Positives = 24/35 (68%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNG 143 +R++ DQ TG SRG GF+ F + +A+ AI LNG Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 47.0 bits (110), Expect = 1e-05 Identities = 23/56 (41%), Positives = 38/56 (67%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGED 209 +++ D+ TG+S GYGFV++ + +DA+ AIN LNGL L + I+ ++A + S D Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 124 Score = 39.7 bits (91), Expect = 0.002 Identities = 18/51 (35%), Positives = 32/51 (62%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWAT 185 ++ +V+ D T + +G+GFV+ N +A AI LNG LG+R ++ ++ T Sbjct: 303 TNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 353 Score = 37.7 bits (86), Expect = 0.007 Identities = 17/35 (48%), Positives = 24/35 (68%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNG 143 +R++ DQ TG SRG GF+ F + +A+ AI LNG Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 47.0 bits (110), Expect = 1e-05 Identities = 23/56 (41%), Positives = 38/56 (67%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGED 209 +++ D+ TG+S GYGFV++ + +DA+ AIN LNGL L + I+ ++A + S D Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 124 Score = 39.7 bits (91), Expect = 0.002 Identities = 18/51 (35%), Positives = 32/51 (62%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWAT 185 ++ +V+ D T + +G+GFV+ N +A AI LNG LG+R ++ ++ T Sbjct: 303 TNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 353 Score = 37.7 bits (86), Expect = 0.007 Identities = 17/35 (48%), Positives = 24/35 (68%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNG 143 +R++ DQ TG SRG GF+ F + +A+ AI LNG Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 47.0 bits (110), Expect = 1e-05 Identities = 23/56 (41%), Positives = 38/56 (67%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGED 209 +++ D+ TG+S GYGFV++ + +DA+ AIN LNGL L + I+ ++A + S D Sbjct: 76 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 131 Score = 40.8 bits (94), Expect = 9e-04 Identities = 19/55 (34%), Positives = 34/55 (61%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGAN 197 ++ +V+ D T + +G+GFV+ N +A AI LNG LG+R ++ ++ T A+ Sbjct: 324 NNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAH 378 Score = 37.7 bits (86), Expect = 0.007 Identities = 17/35 (48%), Positives = 24/35 (68%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNG 143 +R++ DQ TG SRG GF+ F + +A+ AI LNG Sbjct: 161 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 47.0 bits (110), Expect = 1e-05 Identities = 25/60 (41%), Positives = 38/60 (63%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FSA+ N +VM D +GRSRG+GFV++ N ++AQ A++++NG + R I A K Sbjct: 211 FSAFG-NTLSVKVMMDD-SGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQK 268 Score = 37.7 bits (86), Expect = 0.007 Identities = 21/53 (39%), Positives = 31/53 (58%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 FSA+ N +V+ D+ SRGYGFV F + A AI +NG+ L +R++ Sbjct: 119 FSAFG-NILSCKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGMLLNDRKV 168 Score = 32.3 bits (72), Expect = 0.31 Identities = 14/37 (37%), Positives = 25/37 (67%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNG 143 + A+VM + G S+G+GFV F + ++A A+ ++NG Sbjct: 321 TSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNG 355
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 47.0 bits (110), Expect = 1e-05 Identities = 23/56 (41%), Positives = 38/56 (67%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGED 209 +++ D+ TG+S GYGFV++ + +DA+ AIN LNGL L + I+ ++A + S D Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 124 Score = 39.7 bits (91), Expect = 0.002 Identities = 18/51 (35%), Positives = 32/51 (62%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWAT 185 ++ +V+ D T + +G+GFV+ N +A AI LNG LG+R ++ ++ T Sbjct: 304 TNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKT 354 Score = 37.7 bits (86), Expect = 0.007 Identities = 17/35 (48%), Positives = 24/35 (68%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNG 143 +R++ DQ TG SRG GF+ F + +A+ AI LNG Sbjct: 154 SRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 47.0 bits (110), Expect = 1e-05 Identities = 23/56 (41%), Positives = 38/56 (67%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGED 209 +++ D+ TG+S GYGFV++ + +DA+ AIN LNGL L + I+ ++A + S D Sbjct: 69 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 124 Score = 40.8 bits (94), Expect = 9e-04 Identities = 19/55 (34%), Positives = 34/55 (61%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGAN 197 ++ +V+ D T + +G+GFV+ N +A AI LNG LG+R ++ ++ T A+ Sbjct: 317 NNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAH 371 Score = 37.7 bits (86), Expect = 0.007 Identities = 17/35 (48%), Positives = 24/35 (68%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNG 143 +R++ DQ TG SRG GF+ F + +A+ AI LNG Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 47.0 bits (110), Expect = 1e-05 Identities = 23/56 (41%), Positives = 38/56 (67%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGED 209 +++ D+ TG+S GYGFV++ + +DA+ AIN LNGL L + I+ ++A + S D Sbjct: 81 KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRD 136 Score = 40.8 bits (94), Expect = 9e-04 Identities = 19/55 (34%), Positives = 34/55 (61%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGAN 197 ++ +V+ D T + +G+GFV+ N +A AI LNG LG+R ++ ++ T A+ Sbjct: 329 NNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKAH 383 Score = 37.7 bits (86), Expect = 0.007 Identities = 17/35 (48%), Positives = 24/35 (68%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNG 143 +R++ DQ TG SRG GF+ F + +A+ AI LNG Sbjct: 166 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 46.6 bits (109), Expect = 2e-05 Identities = 26/100 (26%), Positives = 50/100 (50%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FSA+ ++M D +G S+G+ F++F + + + +A+ +NG +L NR I ++A K Sbjct: 120 FSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFK 179 Query: 189 GANSGEDQLASDSKSIVDVNNNFTENAKQKSNEDAPENNP 308 + GE + + + N F ++ + D P P Sbjct: 180 RDSKGERHGTAAERMLAAQNPLFPKDRPHQVFSDVPLGVP 219 Score = 34.7 bits (78), Expect = 0.062 Identities = 17/44 (38%), Positives = 26/44 (59%) Frame = +3 Query: 54 DQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWAT 185 D+ T +G+GFV F ++DA AI LN + L + I+ N A+ Sbjct: 47 DRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKAS 90
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 46.6 bits (109), Expect = 2e-05 Identities = 23/49 (46%), Positives = 34/49 (69%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 +ARV++D++TGRSRG+GFV+ + + AI+ L+G L R IR N A Sbjct: 272 EARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320 Score = 35.4 bits (80), Expect = 0.036 Identities = 16/48 (33%), Positives = 30/48 (62%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 A V+++++T +SRG+GFV+ + +A++A+ N L R + N A Sbjct: 179 AEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKA 226
>ROC5_NICSY (P19684) 33 kDa ribonucleoprotein, chloroplast precursor| Length = 324 Score = 46.6 bits (109), Expect = 2e-05 Identities = 22/60 (36%), Positives = 38/60 (63%) Frame = +3 Query: 15 AYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGA 194 A P A+V++D+ +GRSRG+GF++F + + SA++ +N + L R +R N A + A Sbjct: 238 ADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQKA 297
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 46.6 bits (109), Expect = 2e-05 Identities = 23/56 (41%), Positives = 36/56 (64%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGED 209 +++ D+ TG+S GYGFV++ + DA AIN LNGL L + I+ ++A + S D Sbjct: 69 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRD 124 Score = 38.9 bits (89), Expect = 0.003 Identities = 18/51 (35%), Positives = 31/51 (60%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWAT 185 ++ +V+ D T + +G+GFV+ N +A AI LNG LG R ++ ++ T Sbjct: 311 TNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKT 361 Score = 38.5 bits (88), Expect = 0.004 Identities = 17/35 (48%), Positives = 24/35 (68%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNG 143 +R++ DQ TG SRG GF+ F + +A+ AI LNG Sbjct: 154 SRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 46.6 bits (109), Expect = 2e-05 Identities = 23/56 (41%), Positives = 36/56 (64%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGED 209 +++ D+ TG+S GYGFV++ + DA AIN LNGL L + I+ ++A + S D Sbjct: 69 KLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRD 124 Score = 38.9 bits (89), Expect = 0.003 Identities = 18/51 (35%), Positives = 31/51 (60%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWAT 185 ++ +V+ D T + +G+GFV+ N +A AI LNG LG R ++ ++ T Sbjct: 311 TNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKT 361 Score = 37.7 bits (86), Expect = 0.007 Identities = 17/35 (48%), Positives = 24/35 (68%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNG 143 +R++ DQ TG SRG GF+ F + +A+ AI LNG Sbjct: 154 SRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 46.2 bits (108), Expect = 2e-05 Identities = 24/60 (40%), Positives = 37/60 (61%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FSA+ N +VM D +GRSRG+GFV++ N ++AQ A+ ++NG + R + A K Sbjct: 211 FSAFG-NTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQK 268 Score = 37.7 bits (86), Expect = 0.007 Identities = 16/32 (50%), Positives = 22/32 (68%) Frame = +3 Query: 72 SRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 SRGYGFV F Q+ A AI +NG+ L +R++ Sbjct: 137 SRGYGFVHFETQEAANRAIQTMNGMLLNDRKV 168 Score = 37.0 bits (84), Expect = 0.012 Identities = 30/104 (28%), Positives = 46/104 (44%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FS P S RV D T RS GY +++F+ DA+ A++ +N + R IR W+ + Sbjct: 31 FSPAGPIMS-IRVCRDIATRRSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQR 89 Query: 189 GANSGEDQLASDSKSIVDVNNNFTENAKQKSNEDAPENNPLYRT 320 + V N F +N +D+ +N LY T Sbjct: 90 DPGLRKS----------GVGNVFIKNL-----DDSIDNKALYDT 118 Score = 32.0 bits (71), Expect = 0.40 Identities = 11/26 (42%), Positives = 19/26 (73%) Frame = +3 Query: 66 GRSRGYGFVSFRNQQDAQSAINDLNG 143 G S+G+GFV F + ++A A+ ++NG Sbjct: 330 GHSKGFGFVCFSSPEEATKAVTEMNG 355
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 46.2 bits (108), Expect = 2e-05 Identities = 18/35 (51%), Positives = 28/35 (80%) Frame = +3 Query: 63 TGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 TGRS+GYGFV F ++ AQ+AI+ LNG+ + ++Q+ Sbjct: 172 TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQV 206 Score = 40.0 bits (92), Expect = 0.001 Identities = 19/53 (35%), Positives = 36/53 (67%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 FS Y N + ++VM + + G SRG+GFV++ N ++A A++++NG +G + + Sbjct: 352 FSEYG-NVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPL 402 Score = 37.4 bits (85), Expect = 0.009 Identities = 23/59 (38%), Positives = 34/59 (57%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGED 209 S A VM DQ +G SR +GFV+F + A SA+ +NG+ LG+ + A K + E+ Sbjct: 256 SSAVVMRDQ-SGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEE 313
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 46.2 bits (108), Expect = 2e-05 Identities = 22/48 (45%), Positives = 34/48 (70%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 ARV++D+++GRSRG+GFV+ ++ + AI +L+G L R IR N A Sbjct: 220 ARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAA 267 Score = 33.9 bits (76), Expect = 0.10 Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 5/40 (12%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAIN-----DLNG 143 A V+++++T RSRG+GFV+ ++A A+ DLNG Sbjct: 126 AEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNG 165
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 45.8 bits (107), Expect = 3e-05 Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA-T 185 FS Y +++++ D++T RSRG+GFV+F ++ +SAI +NG L R I N A + Sbjct: 7 FSTYG-EVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQS 65 Query: 186 KGANSG 203 +G G Sbjct: 66 RGGRGG 71
>RRP2_SPIOL (P82277) Plastid-specific 30S ribosomal protein 2, chloroplast| precursor (PSRP-2) Length = 260 Score = 45.4 bits (106), Expect = 3e-05 Identities = 21/50 (42%), Positives = 32/50 (64%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 A VM+D+ +GRSR +GFV+ + +DA + I LN +G R+I+ N K Sbjct: 113 AEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEK 162 Score = 38.5 bits (88), Expect = 0.004 Identities = 19/48 (39%), Positives = 30/48 (62%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 A+V T +S G+GFVSF ++++ ++AI LN L ++IR N A Sbjct: 213 AKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 45.4 bits (106), Expect = 3e-05 Identities = 22/48 (45%), Positives = 32/48 (66%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 ARV+ D++TGRSRG+GFV+ ++ + AI L+G L R +R N A Sbjct: 178 ARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVA 225 Score = 42.0 bits (97), Expect = 4e-04 Identities = 19/48 (39%), Positives = 32/48 (66%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 A V+++++T RSRG+GFV+ ++A+ A+ LNG + RQ+ N A Sbjct: 84 AEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVNKA 131
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 45.1 bits (105), Expect = 5e-05 Identities = 21/48 (43%), Positives = 34/48 (70%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 A+++ D+ G S GYGFV++ +DA+ AIN LNGL L ++ I+ ++A Sbjct: 49 AKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 Score = 38.9 bits (89), Expect = 0.003 Identities = 17/51 (33%), Positives = 33/51 (64%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWAT 185 ++ +V+ D T + +G+GFV+ N ++A AI LNG LG++ ++ ++ T Sbjct: 271 TNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKT 321 Score = 37.0 bits (84), Expect = 0.012 Identities = 16/36 (44%), Positives = 23/36 (63%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNG 143 ++RV+ DQ TG SRG F+ F + +A+ AI NG Sbjct: 134 NSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 45.1 bits (105), Expect = 5e-05 Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 6/50 (12%) Frame = +3 Query: 66 GRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNW------ATKGAN 197 G+S GYGFV++ QDA+ A+N LNGL L N+ I+ ++ A KGAN Sbjct: 236 GQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGAN 285 Score = 43.5 bits (101), Expect = 1e-04 Identities = 20/51 (39%), Positives = 31/51 (60%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGA 194 +++ D T + +GYGFVS N +A AI LNG +GNR ++ ++ T A Sbjct: 468 KIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSFKTNKA 518
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 45.1 bits (105), Expect = 5e-05 Identities = 24/50 (48%), Positives = 33/50 (66%), Gaps = 6/50 (12%) Frame = +3 Query: 66 GRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNW------ATKGAN 197 G+S GYGFV++ QDA+ A+N LNGL L N+ I+ ++ A KGAN Sbjct: 200 GQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFARPSSDAIKGAN 249 Score = 43.5 bits (101), Expect = 1e-04 Identities = 20/51 (39%), Positives = 31/51 (60%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGA 194 +++ D T + +GYGFVS N +A AI LNG +GNR ++ ++ T A Sbjct: 432 KIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNGYTMGNRVLQVSFKTNKA 482
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 44.7 bits (104), Expect = 6e-05 Identities = 26/61 (42%), Positives = 35/61 (57%) Frame = +3 Query: 6 FFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWAT 185 +F Y S +VM D G+SRG+GFVSF +DAQ A++D+NG L + I A Sbjct: 210 WFGQYGAALS-VKVMTDDH-GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQ 267 Query: 186 K 188 K Sbjct: 268 K 268 Score = 41.6 bits (96), Expect = 5e-04 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 1/87 (1%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FSA+ N +V+ D+ S+GYGFV F Q+ A+ AI+ +NG+ L +R++ K Sbjct: 119 FSAFG-NILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVG-RFK 174 Query: 189 GANSGEDQLASDSKSIVDVN-NNFTEN 266 E +L + +K +V NF E+ Sbjct: 175 SRKEREAELGARAKEFTNVYIKNFGED 201 Score = 35.0 bits (79), Expect = 0.047 Identities = 20/60 (33%), Positives = 32/60 (53%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FS P S RV D T RS GY +V+F+ DA+ A++ +N + + +R W+ + Sbjct: 31 FSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 89 Score = 34.7 bits (78), Expect = 0.062 Identities = 15/37 (40%), Positives = 26/37 (70%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNG 143 + A+VM + GRS+G+GFV F + ++A A+ ++NG Sbjct: 321 TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 44.3 bits (103), Expect = 8e-05 Identities = 22/53 (41%), Positives = 35/53 (66%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 FS++ N +V D +G+S+GYGFV + N++ AQ AI LNG+ L ++Q+ Sbjct: 144 FSSFG-NIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQV 194 Score = 40.4 bits (93), Expect = 0.001 Identities = 22/43 (51%), Positives = 27/43 (62%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIR 170 RV D T RS GYG+V+F N QDA AI +LN + L + IR Sbjct: 66 RVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIR 108 Score = 36.6 bits (83), Expect = 0.016 Identities = 18/37 (48%), Positives = 25/37 (67%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNG 143 + A VM D + G+S+G+GFV+F N DA A+ LNG Sbjct: 242 TSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNG 277 Score = 29.3 bits (64), Expect = 2.6 Identities = 14/45 (31%), Positives = 28/45 (62%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 + ++VM D G S+G GFV+F ++A A++ L+G + ++ + Sbjct: 345 TSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPL 388
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 43.9 bits (102), Expect = 1e-04 Identities = 20/48 (41%), Positives = 31/48 (64%) Frame = +3 Query: 45 VMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 +M D++T +SRG+ FV+F + DA+ A D+NG L + I+ ATK Sbjct: 39 LMKDRETNKSRGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATK 86
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 43.5 bits (101), Expect = 1e-04 Identities = 21/45 (46%), Positives = 30/45 (66%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNG 143 F Y P S +VM D G+S+G+GFVSF +DAQ A++++NG Sbjct: 211 FGKYGPALS-VKVMTDDN-GKSKGFGFVSFERHEDAQKAVDEMNG 253 Score = 40.8 bits (94), Expect = 9e-04 Identities = 26/79 (32%), Positives = 43/79 (54%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FSA+ N +V+ D+ S+GYGFV F Q+ A+ AI+ +NG+ L +R++ K Sbjct: 119 FSAFG-NILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVG-RFK 174 Query: 189 GANSGEDQLASDSKSIVDV 245 E +L + +K +V Sbjct: 175 SRKEREAELGARAKEFTNV 193 Score = 36.2 bits (82), Expect = 0.021 Identities = 21/60 (35%), Positives = 32/60 (53%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FS P S RV D T RS GY +V+F+ DA+ A++ +N + R +R W+ + Sbjct: 31 FSPAGPILS-IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGRPVRIMWSQR 89 Score = 34.7 bits (78), Expect = 0.062 Identities = 15/37 (40%), Positives = 26/37 (70%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNG 143 + A+VM + GRS+G+GFV F + ++A A+ ++NG Sbjct: 321 TSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 43.1 bits (100), Expect = 2e-04 Identities = 22/53 (41%), Positives = 36/53 (67%), Gaps = 2/53 (3%) Frame = +3 Query: 15 AYSP--NCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 A+SP N + A+VM D++ GRS+G+GFV F +A A+ +LNG +G++ + Sbjct: 306 AFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTELNGRVVGSKPL 357 Score = 41.2 bits (95), Expect = 7e-04 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FSA+ N +V D+K G S+GYGFV F ++ A ++I+ +NG+ L +++ Sbjct: 110 FSAFG-NILSCKVATDEK-GNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIP 167 Query: 189 GANSGEDQLASDSKSIVDVN-NNFTEN 266 E +L +K +V NFTE+ Sbjct: 168 -RKEREKELGEKAKLFTNVYVKNFTED 193 Score = 38.9 bits (89), Expect = 0.003 Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 10/112 (8%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FS+ P S RV D T RS GY +V+F+ DA+ A++ +N + N+ IR W+ + Sbjct: 22 FSSAGPVLS-IRVCRDVITRRSLGYAYVNFQQPADAERALDTMNFDLVRNKPIRIMWSQR 80 Query: 189 GAN---SGEDQL-------ASDSKSIVDVNNNFTENAKQKSNEDAPENNPLY 314 + SG + A D+K+I D + F K D N+ Y Sbjct: 81 DPSLRRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEKGNSKGY 132 Score = 35.0 bits (79), Expect = 0.047 Identities = 18/50 (36%), Positives = 31/50 (62%) Frame = +3 Query: 6 FFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLG 155 FF Y + +VM ++ G+S+G+GFV+F + A++A+ LNG +G Sbjct: 202 FFEPYG-KITSYKVM-SKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMG 249
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 43.1 bits (100), Expect = 2e-04 Identities = 20/48 (41%), Positives = 34/48 (70%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 A+++ D+ G S GYGFV++ +DA+ AI+ LNGL L ++ I+ ++A Sbjct: 49 AKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYA 96 Score = 37.7 bits (86), Expect = 0.007 Identities = 16/51 (31%), Positives = 33/51 (64%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWAT 185 ++ +V+ D T + +G+GFV+ N +++ AI LNG LG++ ++ ++ T Sbjct: 271 TNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASLNGYRLGDKILQVSFKT 321
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 42.7 bits (99), Expect = 2e-04 Identities = 21/65 (32%), Positives = 34/65 (52%) Frame = +3 Query: 3 AFFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 + F + RVM D TG SR +GFV F ++ + + A+ +++G W R +R +A Sbjct: 210 SLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYA 269 Query: 183 TKGAN 197 T N Sbjct: 270 TPRNN 274 Score = 32.3 bits (72), Expect = 0.31 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 8/85 (9%) Frame = +3 Query: 84 GFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA--------TKGANSGEDQLASDSKSIV 239 GFV F + DA+++I L G +G IR +W T G Q S + Sbjct: 398 GFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGRPSSSNAKTNSTIMGASQYMSSNGLRA 457 Query: 240 DVNNNFTENAKQKSNEDAPENNPLY 314 + +N+KQ + A + L+ Sbjct: 458 PSAASSVDNSKQILEQYAEDKRRLF 482
>YDB2_SCHPO (Q10355) Hypothetical RNA-binding protein C22E12.02 in chromosome I| Length = 219 Score = 42.4 bits (98), Expect = 3e-04 Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FS Y P+ +V+ D++ G++RG+GFVSF++ A + NG ++G+R ++ + AT Sbjct: 50 FSEY-PSLVKTKVVRDRE-GKTRGFGFVSFKDSDQFLKAWREKNGKYIGSRPVKLSRATS 107 Query: 189 GANSGE-DQLASDSK 230 E ++ DSK Sbjct: 108 DVKPNEVNEKTIDSK 122
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 42.4 bits (98), Expect = 3e-04 Identities = 25/66 (37%), Positives = 37/66 (56%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FSA +V D+ GRS+GYGFVS+ + + A +AI +N +L N+ I ++A K Sbjct: 119 FSALGQLVKAPQVARDEN-GRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFK 177 Query: 189 GANSGE 206 GE Sbjct: 178 REGKGE 183 Score = 30.0 bits (66), Expect = 1.5 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Frame = +3 Query: 54 DQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWAT--KGANS 200 D+ G+GF F ++QD + A LN + L + IR N A+ +G N+ Sbjct: 45 DRVRNSHNGFGFCEFLHEQDVEYACQILNQVKLFGKPIRVNRASQDRGVNT 95
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 42.4 bits (98), Expect = 3e-04 Identities = 19/48 (39%), Positives = 30/48 (62%) Frame = +3 Query: 45 VMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 +M D++T +SRG+ FV+F + DA+ D+NG L + I+ ATK Sbjct: 39 LMKDRETNKSRGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQATK 86
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 42.0 bits (97), Expect = 4e-04 Identities = 17/55 (30%), Positives = 33/55 (60%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSG 203 AR++ D++TG S+G+GFV F +++DA++A + + ++ +WA G Sbjct: 597 ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 651 Score = 33.9 bits (76), Expect = 0.10 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = +3 Query: 60 KTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIR 170 + G+S+GY F+ F + +DA+ A+N N + R IR Sbjct: 517 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 553 Score = 30.8 bits (68), Expect = 0.89 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 8/93 (8%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNW-ATKGANSG---- 203 A + K G+S+G ++ F+ + DA+ + G + R I + KG N Sbjct: 416 AEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGG 475 Query: 204 -EDQLASDSKSIVDVNNNF--TENAKQKSNEDA 293 + +SK++V N ++ TE Q+ E A Sbjct: 476 KNSTWSGESKTLVLSNLSYSATEETLQEVFEKA 508 Score = 30.4 bits (67), Expect = 1.2 Identities = 22/84 (26%), Positives = 48/84 (57%), Gaps = 2/84 (2%) Frame = +3 Query: 54 DQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDSKS 233 D + G +R +G+V F + +D + A+ +L GL + +I+ KG +S +++ D+++ Sbjct: 339 DVRIGMTRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE-KPKGKDSKKER---DART 393 Query: 234 IVDVNNNF--TENAKQKSNEDAPE 299 ++ N + T++ ++ EDA E Sbjct: 394 LLAKNLPYKVTQDELKEVFEDAAE 417
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 42.0 bits (97), Expect = 4e-04 Identities = 17/55 (30%), Positives = 33/55 (60%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSG 203 AR++ D++TG S+G+GFV F +++DA++A + + ++ +WA G Sbjct: 599 ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 653 Score = 33.9 bits (76), Expect = 0.10 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = +3 Query: 60 KTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIR 170 + G+S+GY F+ F + +DA+ A+N N + R IR Sbjct: 519 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 555 Score = 30.8 bits (68), Expect = 0.89 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 8/93 (8%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNW-ATKGANSG---- 203 A + K G+S+G ++ F+ + DA+ + G + R I + KG N Sbjct: 418 AEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGG 477 Query: 204 -EDQLASDSKSIVDVNNNF--TENAKQKSNEDA 293 + +SK++V N ++ TE Q+ E A Sbjct: 478 KNSTWSGESKTLVLSNLSYSATEETLQEVFEKA 510 Score = 30.4 bits (67), Expect = 1.2 Identities = 22/84 (26%), Positives = 48/84 (57%), Gaps = 2/84 (2%) Frame = +3 Query: 54 DQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDSKS 233 D + G +R +G+V F + +D + A+ +L GL + +I+ KG +S +++ D+++ Sbjct: 341 DVRIGMTRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE-KPKGKDSKKER---DART 395 Query: 234 IVDVNNNF--TENAKQKSNEDAPE 299 ++ N + T++ ++ EDA E Sbjct: 396 LLAKNLPYKVTQDELKEVFEDAAE 419
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 42.0 bits (97), Expect = 4e-04 Identities = 17/55 (30%), Positives = 33/55 (60%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSG 203 AR++ D++TG S+G+GFV F +++DA++A + + ++ +WA G Sbjct: 594 ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 648 Score = 34.7 bits (78), Expect = 0.062 Identities = 21/74 (28%), Positives = 39/74 (52%) Frame = +3 Query: 66 GRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDSKSIVDV 245 G+ +GY F+ F + +DA+ A+N N + + R IR +G+NS S + + + Sbjct: 520 GKPKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLE--LQGSNSRSQ--PSKTLFVKGL 575 Query: 246 NNNFTENAKQKSNE 287 + + TE ++S E Sbjct: 576 SEDTTEETLKESFE 589 Score = 33.5 bits (75), Expect = 0.14 Identities = 24/82 (29%), Positives = 47/82 (57%) Frame = +3 Query: 54 DQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDSKS 233 D +TG +R +G+V F + +D + A+ +L GL + +I+ KG +S + + A+ + Sbjct: 341 DVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE-KPKGRDSKKVR-AARTLL 397 Query: 234 IVDVNNNFTENAKQKSNEDAPE 299 +++ N TE+ ++ EDA E Sbjct: 398 AKNLSFNITEDELKEVFEDAME 419
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 42.0 bits (97), Expect = 4e-04 Identities = 17/55 (30%), Positives = 33/55 (60%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSG 203 AR++ D++TG S+G+GFV F +++DA++A + + ++ +WA G Sbjct: 600 ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 654 Score = 35.8 bits (81), Expect = 0.028 Identities = 19/74 (25%), Positives = 36/74 (48%) Frame = +3 Query: 66 GRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDSKSIVDV 245 G+S+GY F+ F + +DA+ A+N N + + R IR + S + + + Sbjct: 522 GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKGL 581 Query: 246 NNNFTENAKQKSNE 287 + + TE ++S E Sbjct: 582 SEDTTEETLKESFE 595 Score = 33.5 bits (75), Expect = 0.14 Identities = 24/82 (29%), Positives = 47/82 (57%) Frame = +3 Query: 54 DQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDSKS 233 D +TG +R +G+V F + +D + A+ +L GL + +I+ KG +S + + A+ + Sbjct: 343 DVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE-KPKGRDSKKVR-AARTLL 399 Query: 234 IVDVNNNFTENAKQKSNEDAPE 299 +++ N TE+ ++ EDA E Sbjct: 400 AKNLSFNITEDELKEVFEDAVE 421 Score = 28.9 bits (63), Expect = 3.4 Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 7/83 (8%) Frame = +3 Query: 66 GRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGE-----DQLASDSK 230 GRS+G ++ F+++ DA+ + + G + R + + + E + +SK Sbjct: 429 GRSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESK 488 Query: 231 SIVDVNNNF--TENAKQKSNEDA 293 ++V N ++ TE Q+ E A Sbjct: 489 TLVLSNLSYSATEETLQEVFEKA 511
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 42.0 bits (97), Expect = 4e-04 Identities = 17/55 (30%), Positives = 33/55 (60%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSG 203 AR++ D++TG S+G+GFV F +++DA++A + + ++ +WA G Sbjct: 598 ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 652 Score = 33.9 bits (76), Expect = 0.10 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = +3 Query: 60 KTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIR 170 + G+S+GY F+ F + +DA+ A+N N + R IR Sbjct: 518 QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 554 Score = 30.8 bits (68), Expect = 0.89 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 8/93 (8%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNW-ATKGANSG---- 203 A + K G+S+G ++ F+ + DA+ + G + R I + KG N Sbjct: 417 AEIRLVSKDGKSKGIAYIEFKTEADAEKTFEEKQGTEIDGRSISLYYTGEKGQNQDYRGG 476 Query: 204 -EDQLASDSKSIVDVNNNF--TENAKQKSNEDA 293 + +SK++V N ++ TE Q+ E A Sbjct: 477 KNSTWSGESKTLVLSNLSYSATEETLQEVFEKA 509 Score = 30.4 bits (67), Expect = 1.2 Identities = 22/84 (26%), Positives = 48/84 (57%), Gaps = 2/84 (2%) Frame = +3 Query: 54 DQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDSKS 233 D + G +R +G+V F + +D + A+ +L GL + +I+ KG +S +++ D+++ Sbjct: 340 DVRIGMTRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE-KPKGKDSKKER---DART 394 Query: 234 IVDVNNNF--TENAKQKSNEDAPE 299 ++ N + T++ ++ EDA E Sbjct: 395 LLAKNLPYKVTQDELKEVFEDAAE 418
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 42.0 bits (97), Expect = 4e-04 Identities = 17/55 (30%), Positives = 33/55 (60%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSG 203 AR++ D++TG S+G+GFV F +++DA++A + + ++ +WA G Sbjct: 597 ARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 651 Score = 35.8 bits (81), Expect = 0.028 Identities = 19/74 (25%), Positives = 36/74 (48%) Frame = +3 Query: 66 GRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDSKSIVDV 245 G+S+GY F+ F + +DA+ A+N N + + R IR + S + + + Sbjct: 519 GKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLELQGPRGSPNARSQPSKTLFVKGL 578 Query: 246 NNNFTENAKQKSNE 287 + + TE ++S E Sbjct: 579 SEDTTEETLKESFE 592 Score = 33.1 bits (74), Expect = 0.18 Identities = 24/82 (29%), Positives = 47/82 (57%) Frame = +3 Query: 54 DQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDSKS 233 D +TG +R +G+V F + +D + A+ +L GL + +I+ KG +S + + A+ + Sbjct: 340 DVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE-KPKGRDSKKVR-AARTLL 396 Query: 234 IVDVNNNFTENAKQKSNEDAPE 299 +++ N TE+ ++ EDA E Sbjct: 397 AKNLSFNITEDELKEVFEDALE 418 Score = 27.7 bits (60), Expect = 7.5 Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 7/83 (8%) Frame = +3 Query: 66 GRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGE-----DQLASDSK 230 G+S+G ++ F+++ DA+ + + G + R + + + E + +SK Sbjct: 426 GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGQRQERTGKNSTWSGESK 485 Query: 231 SIVDVNNNF--TENAKQKSNEDA 293 ++V N ++ TE Q+ E A Sbjct: 486 TLVLSNLSYSATEETLQEVFEKA 508
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 41.6 bits (96), Expect = 5e-04 Identities = 22/76 (28%), Positives = 38/76 (50%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 F Y P D V D T R RG+ +V F + +DA+ A+++L+ W+ RQI +A Sbjct: 30 FGRYGP-IVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQG 88 Query: 189 GANSGEDQLASDSKSI 236 + A + +++ Sbjct: 89 DRKTPNQMKAKEGRNV 104
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 41.6 bits (96), Expect = 5e-04 Identities = 22/76 (28%), Positives = 38/76 (50%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 F Y P D V D T R RG+ +V F + +DA+ A+++L+ W+ RQI +A Sbjct: 30 FGRYGP-IVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQG 88 Query: 189 GANSGEDQLASDSKSI 236 + A + +++ Sbjct: 89 DRKTPNQMKAKEGRNV 104
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 41.6 bits (96), Expect = 5e-04 Identities = 19/48 (39%), Positives = 30/48 (62%) Frame = +3 Query: 45 VMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 +M D++T +SRG+ FV+ + DA+ A D+NG L + I+ ATK Sbjct: 39 LMKDRETNKSRGFAFVTLESPADAKDAARDMNGKSLDGKAIKVEQATK 86
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 40.8 bits (94), Expect = 9e-04 Identities = 18/48 (37%), Positives = 31/48 (64%) Frame = +3 Query: 27 NCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIR 170 N A+V D++T S+ +GFVS+ N AQ+AI +NG +G ++++ Sbjct: 426 NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 473
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 40.8 bits (94), Expect = 9e-04 Identities = 18/48 (37%), Positives = 31/48 (64%) Frame = +3 Query: 27 NCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIR 170 N A+V D++T S+ +GFVS+ N AQ+AI +NG +G ++++ Sbjct: 426 NVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 473
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 40.8 bits (94), Expect = 9e-04 Identities = 21/60 (35%), Positives = 33/60 (55%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 F++ P S RV D T RS GY +V+F N +D + A+++LN + R R W+ + Sbjct: 100 FNSIGPVAS-IRVCRDAVTRRSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQR 158 Score = 35.8 bits (81), Expect = 0.028 Identities = 17/55 (30%), Positives = 34/55 (61%) Frame = +3 Query: 3 AFFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 A FSA+ + A++M D++ G+S+G+GFV + ++A A+ ++N L + + Sbjct: 382 AEFSAFG-TITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPL 434 Score = 35.0 bits (79), Expect = 0.047 Identities = 19/53 (35%), Positives = 33/53 (62%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 FSA+ S +V D+ G ++GYGFV F + + A +AI +NG+ L ++++ Sbjct: 188 FSAFGKILS-CKVAVDE-LGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKV 238 Score = 30.8 bits (68), Expect = 0.89 Identities = 11/24 (45%), Positives = 19/24 (79%) Frame = +3 Query: 69 RSRGYGFVSFRNQQDAQSAINDLN 140 + RG+GFV++ N + AQ A+++LN Sbjct: 299 KPRGFGFVNYANHECAQKAVDELN 322
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 40.4 bits (93), Expect = 0.001 Identities = 26/78 (33%), Positives = 38/78 (48%) Frame = +3 Query: 69 RSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDSKSIVDVN 248 R RG+GFVSF N +D AI ++NG +G+ + K A ED+ + Sbjct: 256 RGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTL----VVKSAVFREDKQNDE-------- 303 Query: 249 NNFTENAKQKSNEDAPEN 302 N EN +++E AP N Sbjct: 304 NEKNENEPIEASESAPTN 321 Score = 36.6 bits (83), Expect = 0.016 Identities = 22/76 (28%), Positives = 35/76 (46%) Frame = +3 Query: 78 GYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDSKSIVDVNNNF 257 G FV+F NQ+D AI LNG L +R+I + A ++Q D K + N Sbjct: 90 GIAFVTFNNQEDVDKAIETLNGKTLDDREI----VVQKARPVQEQPIKDRKKSKNKNGEE 145 Query: 258 TENAKQKSNEDAPENN 305 E + N ++ + + Sbjct: 146 PETSTSVENAESAKGS 161
>RAVR1_HUMAN (Q8IY67) Protein raver-1| Length = 606 Score = 40.0 bits (92), Expect = 0.001 Identities = 17/49 (34%), Positives = 29/49 (59%) Frame = +3 Query: 45 VMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKG 191 +++ ++TG+S+GYGF + + A A +DL G LG R + +W G Sbjct: 163 LVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAG 211
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 40.0 bits (92), Expect = 0.001 Identities = 21/58 (36%), Positives = 31/58 (53%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 F Y P D + D T R RG+ +V F + +DA+ A+ +LN W+ RQI +A Sbjct: 30 FGRYGP-IVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQIEIQFA 86
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 40.0 bits (92), Expect = 0.001 Identities = 22/62 (35%), Positives = 36/62 (58%) Frame = +3 Query: 3 AFFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 A F + P S+ ++ D +T +SRG+ F++F N DA++A D+NG L + I+ A Sbjct: 26 AVFGKHGP-ISEVLLIKD-RTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 Query: 183 TK 188 K Sbjct: 84 KK 85
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 40.0 bits (92), Expect = 0.001 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 1/92 (1%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FSA+ N +V+ D+ S+GY FV F Q+ A AI +NG+ L +R++ K Sbjct: 119 FSAFG-NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVG-RFK 174 Query: 189 GANSGEDQLASDSKSIVDVN-NNFTENAKQKS 281 E +L + +K +V NF E +S Sbjct: 175 SRKEREAELGAKAKEFTNVYIKNFGEEVDDES 206 Score = 37.7 bits (86), Expect = 0.007 Identities = 18/52 (34%), Positives = 35/52 (67%), Gaps = 2/52 (3%) Frame = +3 Query: 18 YSP--NCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 +SP + + A+VM + GRS+G+GFV F + ++A A+ ++NG +G++ + Sbjct: 314 FSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363 Score = 37.4 bits (85), Expect = 0.009 Identities = 21/60 (35%), Positives = 33/60 (55%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FS + S +VM D G+S+G+GFVS+ +DA A+ ++NG + + I A K Sbjct: 211 FSQFGKTLS-VKVMRDPN-GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQK 268 Score = 35.4 bits (80), Expect = 0.036 Identities = 21/60 (35%), Positives = 32/60 (53%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FS P S RV D T RS GY +V+F+ DA+ A++ +N + + IR W+ + Sbjct: 31 FSPAGPVLS-IRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQR 89
>RAVR1_RAT (Q5XI28) Protein raver-1| Length = 748 Score = 39.7 bits (91), Expect = 0.002 Identities = 17/49 (34%), Positives = 28/49 (57%) Frame = +3 Query: 45 VMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKG 191 +++ ++TG S+GYGF + + A A +DL G LG R + +W G Sbjct: 163 LVYSERTGHSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAG 211
>RAVR1_MOUSE (Q9CW46) Protein raver-1| Length = 748 Score = 39.7 bits (91), Expect = 0.002 Identities = 17/49 (34%), Positives = 28/49 (57%) Frame = +3 Query: 45 VMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKG 191 +++ ++TG S+GYGF + + A A +DL G LG R + +W G Sbjct: 163 LVYSERTGHSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAG 211
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 38.9 bits (89), Expect = 0.003 Identities = 18/45 (40%), Positives = 26/45 (57%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCN 176 RV +KTG S+GYGFV F + A+ +N +G R I+C+ Sbjct: 75 RVSRSKKTGGSKGYGFVEFECDEVAKIVAETMNNYLMGERIIKCH 119
>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic| region Length = 220 Score = 38.9 bits (89), Expect = 0.003 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 4/88 (4%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGE--- 206 + R+ ++KTG SR YGF+ F N++DA A +N L ++ KGA + Sbjct: 119 EVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESMNNYLLMGHLLQVRVLPKGAKIEKLYK 178 Query: 207 -DQLASDSKSIVDVNNNFTENAKQKSNE 287 + K I +N KQK E Sbjct: 179 YKKRVLVEKGITKPVKQLKDNMKQKHEE 206
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 38.9 bits (89), Expect = 0.003 Identities = 18/52 (34%), Positives = 31/52 (59%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKG 191 D + D+ T SRG+ FV F +++DA+ A++ ++G L R++R A G Sbjct: 41 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 92
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 38.9 bits (89), Expect = 0.003 Identities = 18/52 (34%), Positives = 31/52 (59%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKG 191 D + D+ T SRG+ FV F +++DA+ A++ ++G L R++R A G Sbjct: 41 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 92
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 38.9 bits (89), Expect = 0.003 Identities = 18/52 (34%), Positives = 31/52 (59%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKG 191 D + D+ T SRG+ FV F +++DA+ A++ ++G L R++R A G Sbjct: 41 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 92
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 38.9 bits (89), Expect = 0.003 Identities = 18/52 (34%), Positives = 31/52 (59%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKG 191 D + D+ T SRG+ FV F +++DA+ A++ ++G L R++R A G Sbjct: 41 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 92
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 38.9 bits (89), Expect = 0.003 Identities = 18/52 (34%), Positives = 31/52 (59%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKG 191 D + D+ T SRG+ FV F +++DA+ A++ ++G L R++R A G Sbjct: 42 DVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 93
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 38.9 bits (89), Expect = 0.003 Identities = 18/56 (32%), Positives = 30/56 (53%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANS 200 + R+ D +GRS YG+ +F ++QDA AI N L + IR W+ + ++ Sbjct: 51 TSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDA 106 Score = 35.8 bits (81), Expect = 0.028 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 6/78 (7%) Frame = +3 Query: 75 RGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGE------DQLASDSKSI 236 RGY FV+F N +DA+ A +NG G++ + A K A + + + K I Sbjct: 241 RGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMI 300 Query: 237 VDVNNNFTENAKQKSNED 290 V+N + +N E+ Sbjct: 301 AKVSNIYVKNVNVAVTEE 318 Score = 35.4 bits (80), Expect = 0.036 Identities = 15/34 (44%), Positives = 22/34 (64%) Frame = +3 Query: 66 GRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 G+SRGYGFV F + A +AI LN + +++I Sbjct: 149 GKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEI 182 Score = 30.8 bits (68), Expect = 0.89 Identities = 13/37 (35%), Positives = 24/37 (64%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNG 143 + ++M D+K G+S+G+GFV F ++A A+ +G Sbjct: 331 TSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAVKTFHG 366
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 38.5 bits (88), Expect = 0.004 Identities = 21/53 (39%), Positives = 33/53 (62%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGA 194 +A V+ D++TG+SRGYGFV+ ++ A+ A D N + + R+ N A GA Sbjct: 39 EAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPI-IDGRKANVNLAYLGA 90
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 38.5 bits (88), Expect = 0.004 Identities = 17/55 (30%), Positives = 33/55 (60%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGAN 197 +D +++ D + G SR +GF+ +RN++DA A+ NG ++ +I + A A+ Sbjct: 44 TDVKILRD-RNGESRRFGFIGYRNEEDAFDAVEYFNGSFINTSKIEVSMAKSFAD 97 Score = 29.6 bits (65), Expect = 2.0 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 2/47 (4%) Frame = +3 Query: 6 FFSAYSP--NCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLN 140 F +SP + V D +TG+S+G+ +V F++ ++A +A +L+ Sbjct: 361 FRKLFSPFGELEEVHVALDTRTGQSKGFAYVLFKDSKNAVNAYVELD 407
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 38.5 bits (88), Expect = 0.004 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = +3 Query: 54 DQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGAN 197 D+ TG+S+G+ F+SF ++DA AI ++G + + WA N Sbjct: 273 DKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 320
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 38.5 bits (88), Expect = 0.004 Identities = 16/48 (33%), Positives = 27/48 (56%) Frame = +3 Query: 54 DQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGAN 197 D+ TG+S+G+ F+SF ++DA AI ++G + + WA N Sbjct: 273 DKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 320
>YG5B_YEAST (P53316) Hypothetical 89.5 kDa protein in MGA1-GCN4 intergenic| region Length = 781 Score = 38.1 bits (87), Expect = 0.006 Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 5/77 (6%) Frame = +3 Query: 18 YSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI-RCNWATKGA 194 Y +D+ D G SRGYGFVSF + DA AI + +G + Q+ ++A K Sbjct: 581 YRQQSNDSSSDNDLPVGSSRGYGFVSFESPLDAAKAILNTDGYQVSKDQVLSVSFAQKRG 640 Query: 195 N----SGEDQLASDSKS 233 N +DQ +D+ S Sbjct: 641 NLSSSDDDDQSQTDNSS 657 Score = 35.0 bits (79), Expect = 0.047 Identities = 18/57 (31%), Positives = 29/57 (50%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNW 179 FS Y P S ++++D+ G GYGF+S+ A I +LNG + + N+ Sbjct: 215 FSKYGPILS-MKLIYDKTKGEPNGYGFISYPLGSQASLCIKELNGRTVNGSTLFINY 270 Score = 32.7 bits (73), Expect = 0.23 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = +3 Query: 75 RGYGFVSFRNQQDAQSAINDLNG-LWLGNRQI 167 +GYGF+ N + A +AI NG +W GNR + Sbjct: 381 KGYGFIKLINHEQALAAIETFNGFMWHGNRLV 412
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 38.1 bits (87), Expect = 0.006 Identities = 19/56 (33%), Positives = 34/56 (60%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANS 200 SD ++++++ S+G+GFV+ QDA+ A +L+G + R+I N AT +S Sbjct: 180 SDVEIIFNERG--SKGFGFVTMERPQDAERARQELHGSMIEGRKIEVNCATARVHS 233
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 38.1 bits (87), Expect = 0.006 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 9/101 (8%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA---------T 185 +D ++ D +T + RG+ FV F +DA +AI+++N L R IR N A + Sbjct: 33 TDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIKEGSS 92 Query: 186 KGANSGEDQLASDSKSIVDVNNNFTENAKQKSNEDAPENNP 308 + S +D L S ++ N E + +A E P Sbjct: 93 RPVWSDDDWLKKFSGKTLEENKE--EEGPEPPKAEAQEGEP 131
>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1| (RNA-binding protein srp-5) (CeSRp75) Length = 312 Score = 38.1 bits (87), Expect = 0.006 Identities = 15/43 (34%), Positives = 28/43 (65%) Frame = +3 Query: 78 GYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGE 206 G+GFV F +++DA+ A++DLNG LG ++ +++ G+ Sbjct: 37 GFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYSKPRGGGGD 79
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 37.7 bits (86), Expect = 0.007 Identities = 17/49 (34%), Positives = 30/49 (61%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 DA +M+D+ T R RG+GFV+F N +D + +++ + N+ + C A Sbjct: 138 DAMLMFDKTTNRHRGFGFVTFEN-EDVVEKVCEIHFHEINNKMVECKKA 185 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +3 Query: 6 FFSAYSPNCSDARVMWDQKTGRSRGYGFVSF 98 +FS + + VM D T RSRG+GFV+F Sbjct: 40 YFSKFG-EIRECMVMRDPTTKRSRGFGFVTF 69
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 37.7 bits (86), Expect = 0.007 Identities = 19/50 (38%), Positives = 30/50 (60%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 +D ++ D +T + RG+ FV F +DA +AI+++N L R IR N A Sbjct: 33 TDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 82
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 37.7 bits (86), Expect = 0.007 Identities = 21/53 (39%), Positives = 32/53 (60%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGA 194 +A V+ D++TG+SRGYGFV+ ++ A A D N + + R+ N A GA Sbjct: 60 EAVVITDRQTGKSRGYGFVTMADRAAADRACKDPNPI-IDGRKANVNLAYLGA 111
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 37.7 bits (86), Expect = 0.007 Identities = 17/49 (34%), Positives = 30/49 (61%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 DA +M+D+ T R RG+GFV+F N +D + +++ + N+ + C A Sbjct: 138 DAMLMFDKTTNRHRGFGFVTFEN-EDVVEKVCEIHFHEINNKMVECKKA 185 Score = 28.1 bits (61), Expect = 5.8 Identities = 14/31 (45%), Positives = 19/31 (61%) Frame = +3 Query: 6 FFSAYSPNCSDARVMWDQKTGRSRGYGFVSF 98 +FS + + VM D T RSRG+GFV+F Sbjct: 40 YFSKFG-EIRECMVMRDPTTKRSRGFGFVTF 69
>RBMX2_HUMAN (Q9Y388) RNA-binding motif protein, X-linked 2| Length = 322 Score = 37.4 bits (85), Expect = 0.009 Identities = 20/70 (28%), Positives = 37/70 (52%) Frame = +3 Query: 54 DQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDSKS 233 D+KTG+S+G+ F+ + +Q+ A+++ NG+ + R IR + + + DS+ Sbjct: 70 DKKTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVD------HVSNYRAPKDSEE 123 Query: 234 IVDVNNNFTE 263 I DV E Sbjct: 124 IDDVTRQLQE 133
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 37.4 bits (85), Expect = 0.009 Identities = 20/75 (26%), Positives = 34/75 (45%) Frame = +3 Query: 66 GRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDSKSIVDV 245 G+ RG+GFV F+N +A A+ +N + R + +WA + Q S Sbjct: 150 GKMRGFGFVQFKNLLEAGKALKGMNMKEIKGRTVAVDWAVAKDKYKDTQSVSAIGEEKSH 209 Query: 246 NNNFTENAKQKSNED 290 + E+ K+K E+ Sbjct: 210 ESKHQESVKKKGREE 224
>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 459 Score = 37.0 bits (84), Expect = 0.012 Identities = 18/58 (31%), Positives = 33/58 (56%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 FS + P S V+ D++TG S Y F+ F NQ+D + A + G+ + + +I +++ Sbjct: 268 FSRFGPILS-CEVIRDKRTGDSLQYAFIEFENQKDCEQAYFKMQGVLIDDHRIHVDFS 324
>ACF_RAT (Q923K9) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 37.0 bits (84), Expect = 0.012 Identities = 18/44 (40%), Positives = 29/44 (65%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 + R+M D G +RGY FV+F N+Q+A++AI LN + N ++ Sbjct: 84 EMRMMMDFN-GNNRGYAFVTFSNKQEAKNAIKQLNNYEIRNGRL 126 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +3 Query: 57 QKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 ++ + R Y FV F N++DA A+ LNG L I A Sbjct: 260 ERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 301
>U2AF1_DROME (Q94535) Splicing factor U2af 38 kDa subunit (U2 auxiliary factor| 38 kDa subunit) (U2 snRNP auxiliary factor small subunit) Length = 264 Score = 37.0 bits (84), Expect = 0.012 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = +3 Query: 78 GYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 G ++ FRN+ DA+ A NDLN W G R + Sbjct: 113 GNVYIKFRNEADAEKAANDLNNRWFGGRPV 142
>PPIE_SCHMA (Q26548) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) Length = 273 Score = 36.6 bits (83), Expect = 0.016 Identities = 18/43 (41%), Positives = 26/43 (60%) Frame = +3 Query: 54 DQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 D +T + RG+ FV F +DA SAI+++N + R IR N A Sbjct: 4 DYQTEKHRGFAFVEFEEVEDAMSAIDNMNESEIFGRTIRVNVA 46
>PES4_YEAST (P39684) Protein PES4 (DNA polymerase epsilon suppressor 4)| Length = 611 Score = 36.6 bits (83), Expect = 0.016 Identities = 15/49 (30%), Positives = 32/49 (65%) Frame = +3 Query: 24 PNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIR 170 P+ A+V D T +S G+G+++F ++++A+ A+ +LN + ++IR Sbjct: 115 PSFVSAKVCLDSVTKKSLGHGYLNFEDKEEAEKAMEELNYTKVNGKEIR 163 Score = 28.9 bits (63), Expect = 3.4 Identities = 12/32 (37%), Positives = 17/32 (53%) Frame = +3 Query: 84 GFVSFRNQQDAQSAINDLNGLWLGNRQIRCNW 179 GF+ FRN +DA N LN +G + +W Sbjct: 437 GFIKFRNFEDATRIFNFLNNRLVGGSIVTTSW 468
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 36.6 bits (83), Expect = 0.016 Identities = 15/49 (30%), Positives = 27/49 (55%) Frame = +3 Query: 57 QKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSG 203 Q GR++G+ F+ F + +DA+ A++ N + R IR ++ G G Sbjct: 444 QNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQGGGPQG 492 Score = 35.8 bits (81), Expect = 0.028 Identities = 14/30 (46%), Positives = 23/30 (76%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSA 125 +AR++ D+ TG S+G+GFV F +DA++A Sbjct: 527 NARIVTDRDTGASKGFGFVDFSTAEDAKAA 556
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 36.6 bits (83), Expect = 0.016 Identities = 16/54 (29%), Positives = 28/54 (51%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIR 170 F+ + P + WD T + +G+ FV + + AQ A+ +NG +G R I+ Sbjct: 150 FTPFGP-IKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQMNGALMGGRNIK 202 Score = 28.9 bits (63), Expect = 3.4 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +3 Query: 75 RGYGFVSFRNQQDAQSAINDLNGLWLGNRQIR 170 +GYGF+ + N+Q AI +N LG + +R Sbjct: 268 KGYGFIEYANKQAMDEAIASMNLFDLGGQLLR 299
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 36.6 bits (83), Expect = 0.016 Identities = 17/50 (34%), Positives = 30/50 (60%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 +D ++ D ++ R RG+ F+ + +DA +AI+++N L R IR N A Sbjct: 33 ADIQMPADYESQRHRGFAFIEYEQSEDAAAAIDNMNDSELCGRTIRVNLA 82
>RBMX2_MOUSE (Q8R0F5) RNA-binding motif protein, X-linked 2| Length = 326 Score = 36.2 bits (82), Expect = 0.021 Identities = 14/39 (35%), Positives = 27/39 (69%) Frame = +3 Query: 54 DQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIR 170 D+KTG+S+G+ F+ + +Q+ A+++ NG+ + R IR Sbjct: 70 DKKTGKSKGFCFLCYEDQRSTVLAVDNFNGIKIKGRTIR 108
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 36.2 bits (82), Expect = 0.021 Identities = 15/36 (41%), Positives = 25/36 (69%) Frame = +3 Query: 60 KTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 + G+S+G+GFV F + A+ AI+ LNG+ L ++I Sbjct: 160 ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEI 195 Score = 29.6 bits (65), Expect = 2.0 Identities = 14/36 (38%), Positives = 23/36 (63%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLN 140 + A+VM + G+S+G+GFV F ++A AI + N Sbjct: 348 TSAKVMRTEN-GKSKGFGFVCFSTPEEATKAITEKN 382 Score = 29.6 bits (65), Expect = 2.0 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +3 Query: 66 GRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 G+ +G+GFV++ +DA A+ LN L ++ A K Sbjct: 255 GKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQK 295
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 36.2 bits (82), Expect = 0.021 Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 11/84 (13%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCN-----------WAT 185 ARV+ D ++GRS+GYG+V F + A++A+ + R + + +A Sbjct: 292 ARVIMDGQSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQ 351 Query: 186 KGANSGEDQLASDSKSIVDVNNNF 257 + A + DQL+ S ++ N +F Sbjct: 352 QRAGNFGDQLSEPSDTVFVGNLSF 375 Score = 33.9 bits (76), Expect = 0.10 Identities = 15/54 (27%), Positives = 32/54 (59%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSG 203 R+ D ++GR +G+G+V+F + A+ + ++NG ++ R R +++T G Sbjct: 396 RLPTDPQSGRLKGFGYVTFSDIDSAKKCV-EMNGHFIAGRPCRLDFSTPRTGGG 448
>RSP2_CAEEL (Q23120) Probable splicing factor, arginine/serine-rich 2| (RNA-binding protein srp-4) (CeSRp40) Length = 281 Score = 36.2 bits (82), Expect = 0.021 Identities = 16/48 (33%), Positives = 28/48 (58%) Frame = +3 Query: 78 GYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLAS 221 G+GFV F++Q+DA A++DLNG L ++ + + E++ S Sbjct: 36 GFGFVDFQDQRDADDAVHDLNGKELCGERVILEFPRRKVGYNEERSGS 83
>IF34_YEAST (Q04067) Eukaryotic translation initiation factor 3 RNA-binding| subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 274 Score = 35.8 bits (81), Expect = 0.028 Identities = 16/46 (34%), Positives = 30/46 (65%) Frame = +3 Query: 45 VMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 V+ +++TG+SRG FV+F +++ A+ A+ L+G N +R W+ Sbjct: 223 VVRNKETGKSRGLAFVTFSSEEVAEQALRFLDGRGYMNLILRVEWS 268
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 35.8 bits (81), Expect = 0.028 Identities = 24/88 (27%), Positives = 40/88 (45%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLAS 221 R+M + T SRG+GF+SF ++A SAI++LN R + Q A Sbjct: 131 RIMREPVTKASRGFGFLSFSTVEEATSAIDNLNSQEFYGRVLNV------------QKAK 178 Query: 222 DSKSIVDVNNNFTENAKQKSNEDAPENN 305 S+ + +++++ D P NN Sbjct: 179 RSRPHSPTPGKYMGYDRRRNSRDFPSNN 206
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 35.8 bits (81), Expect = 0.028 Identities = 16/43 (37%), Positives = 25/43 (58%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIR 170 +++ D +TG +GYGF F + + A+ LN LG R+IR Sbjct: 37 KLVLDPETGSGKGYGFCEFFDSETTAMAVRKLNNSELGPRKIR 79
>ARP2_PLAFA (P13824) Clustered-asparagine-rich protein (CARP)| Length = 443 Score = 35.8 bits (81), Expect = 0.028 Identities = 15/35 (42%), Positives = 24/35 (68%) Frame = +3 Query: 66 GRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIR 170 GR+ G+GFVS+ N AQ AI +NG ++ N+ ++ Sbjct: 395 GRNSGFGFVSYDNVISAQHAIQFMNGYFVNNKYLK 429
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 35.8 bits (81), Expect = 0.028 Identities = 14/29 (48%), Positives = 23/29 (79%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSA 125 AR++ D+ TG S+G+GFV F + +DA++A Sbjct: 579 ARIVTDRDTGSSKGFGFVDFSSPEDAKAA 607 Score = 35.8 bits (81), Expect = 0.028 Identities = 16/46 (34%), Positives = 24/46 (52%) Frame = +3 Query: 66 GRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSG 203 GR +GY FV F +DA+ A+N N + R IR +++ G Sbjct: 495 GRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSPSWQKG 540
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 35.8 bits (81), Expect = 0.028 Identities = 18/47 (38%), Positives = 29/47 (61%) Frame = +3 Query: 6 FFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGL 146 FFS Y + + +++ D + G S+GYGFV+F Q+DAQ + + L Sbjct: 52 FFSQYG-SVKEVKIVND-RAGVSKGYGFVTFETQEDAQKILQEAEKL 96
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 35.8 bits (81), Expect = 0.028 Identities = 18/47 (38%), Positives = 29/47 (61%) Frame = +3 Query: 6 FFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGL 146 FFS Y + + +++ D + G S+GYGFV+F Q+DAQ + + L Sbjct: 52 FFSQYG-SVKEVKIVND-RAGVSKGYGFVTFETQEDAQKILQEAEKL 96
>ACF_MOUSE (Q5YD48) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 595 Score = 35.8 bits (81), Expect = 0.028 Identities = 17/35 (48%), Positives = 25/35 (71%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLN 140 + R+M D G +RGY FV+F N+Q+A++AI LN Sbjct: 84 EMRLMMDFN-GNNRGYAFVTFSNKQEAKNAIKQLN 117 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +3 Query: 57 QKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 ++ + R Y FV F N++DA A+ LNG L I A Sbjct: 260 ERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 301
>PABPX_SCHPO (Q9P6M8) mRNA export factor crp79 (Polyadenylate-binding protein| crp79) (Poly(A)-binding protein) (PABP) (Meiotic expression up-regulated protein 5) Length = 710 Score = 35.8 bits (81), Expect = 0.028 Identities = 16/35 (45%), Positives = 25/35 (71%) Frame = +3 Query: 63 TGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 +G S+GYGFV+FR + A A + LNG+ +G ++I Sbjct: 421 SGISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRI 455
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 35.4 bits (80), Expect = 0.036 Identities = 17/47 (36%), Positives = 29/47 (61%) Frame = +3 Query: 6 FFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGL 146 FFS Y + + +++ D + G S+GYGF++F Q+DAQ + + L Sbjct: 52 FFSQYG-SVKEVKIVND-RAGVSKGYGFITFETQEDAQKILQEAEKL 96
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 35.4 bits (80), Expect = 0.036 Identities = 16/49 (32%), Positives = 30/49 (61%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 DA +M+D+ T R RG+GFV+F + +D + +++ + N+ + C A Sbjct: 137 DAMLMFDKTTNRHRGFGFVTFES-EDIVEKVCEIHFHEINNKMVECKKA 184 Score = 28.9 bits (63), Expect = 3.4 Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = +3 Query: 45 VMWDQKTGRSRGYGFVSFRNQ 107 VM D T RSRG+GFV+F +Q Sbjct: 51 VMRDPLTKRSRGFGFVTFMDQ 71
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 35.4 bits (80), Expect = 0.036 Identities = 16/49 (32%), Positives = 30/49 (61%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 DA +M+D+ T R RG+GFV+F + +D + +++ + N+ + C A Sbjct: 137 DAMLMFDKTTNRHRGFGFVTFES-EDIVEKVCEIHFHEINNKMVECKKA 184 Score = 28.9 bits (63), Expect = 3.4 Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = +3 Query: 45 VMWDQKTGRSRGYGFVSFRNQ 107 VM D T RSRG+GFV+F +Q Sbjct: 51 VMRDPLTKRSRGFGFVTFMDQ 71
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 35.4 bits (80), Expect = 0.036 Identities = 16/49 (32%), Positives = 30/49 (61%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 DA +M+D+ T R RG+GFV+F + +D + +++ + N+ + C A Sbjct: 137 DAMLMFDKTTNRHRGFGFVTFES-EDIVEKVCEIHFHEINNKMVECKKA 184 Score = 28.9 bits (63), Expect = 3.4 Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = +3 Query: 45 VMWDQKTGRSRGYGFVSFRNQ 107 VM D T RSRG+GFV+F +Q Sbjct: 51 VMRDPLTKRSRGFGFVTFMDQ 71
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 35.4 bits (80), Expect = 0.036 Identities = 18/55 (32%), Positives = 32/55 (58%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGAN 197 +D +++ D K+G SR + F+ +R++QDA AI NG ++ +I A A+ Sbjct: 38 TDVKIVKD-KSGNSRRFAFIGYRSEQDAFDAIEYFNGSFIDTARIEVAMAKSFAD 91 Score = 29.3 bits (64), Expect = 2.6 Identities = 14/44 (31%), Positives = 26/44 (59%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLN 140 FS Y + V D +TG+S+G+ +V F++ + A +A +L+ Sbjct: 321 FSPYG-ELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIELD 363
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 35.4 bits (80), Expect = 0.036 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 2/62 (3%) Frame = +3 Query: 54 DQKTGRSRGYGFVSFRNQQDAQSAINDLNGL-WLGNRQIRCNWATKGAN-SGEDQLASDS 227 D++TGR RG+GFV + +AI L+G W+G R ++ N A N SG Sbjct: 35 DRETGRMRGFGFVELEADAEETAAIEALDGAEWMG-RDLKVNKAKPRENRSGGGSFGGGR 93 Query: 228 KS 233 KS Sbjct: 94 KS 95
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 35.4 bits (80), Expect = 0.036 Identities = 16/55 (29%), Positives = 35/55 (63%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGAN 197 +D R++ +++ G+SR + F+ ++N+QDA A+N +G ++ +I + A A+ Sbjct: 40 TDLRILKNRE-GKSRRFAFIGYKNEQDALDAVNYFDGSFIYTSKIEVDMAKSFAD 93 Score = 33.9 bits (76), Expect = 0.10 Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%) Frame = +3 Query: 72 SRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSG--EDQLASDSKSIV 239 S G+GFV FR ++ A + I+ ++G + +I+ + + N+G E + A + K IV Sbjct: 685 SMGFGFVEFRTKEQATAVISAMDGTVIDGHKIQLKLSHRQGNAGSQEKKKAKNGKIIV 742 Score = 27.7 bits (60), Expect = 7.5 Identities = 14/44 (31%), Positives = 23/44 (52%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLN 140 FS Y + V D +TG S+G+ +V F ++A A +L+ Sbjct: 345 FSPYG-ELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIELD 387
>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)| (hnRNP 48) (HRP48.1) Length = 421 Score = 35.4 bits (80), Expect = 0.036 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 4/69 (5%) Frame = +3 Query: 6 FFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAIND----LNGLWLGNRQIRC 173 FF+ Y ++ +M+DQ+ +SRG+GF+SF + + N+ LNG + ++ Sbjct: 115 FFNRYG-KVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEP 173 Query: 174 NWATKGANS 200 + G NS Sbjct: 174 RDGSGGQNS 182 Score = 29.6 bits (65), Expect = 2.0 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAIND 134 D VM + ++GRSRG+GFV+F + + + + Sbjct: 35 DCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 35.4 bits (80), Expect = 0.036 Identities = 17/55 (30%), Positives = 31/55 (56%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGAN 197 SD ++M + G SR + F+ FR+++DA +N NG ++ +I + A A+ Sbjct: 40 SDVKLM-KNRDGESRRFAFIGFRDEEDAFDCVNYFNGTFVDTSKIEVSMAKSFAD 93 Score = 31.2 bits (69), Expect = 0.68 Identities = 14/44 (31%), Positives = 26/44 (59%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLN 140 FS Y + + D +TG+S+G+ +V F+N +A +A +L+ Sbjct: 350 FSPYG-ELEEVHIAVDTRTGQSKGFAYVLFKNADNAATAFVELD 392
>PPIL4_MOUSE (Q9CXG3) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 35.0 bits (79), Expect = 0.047 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 9/104 (8%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI------- 167 FS + P S V+ D KTG S Y F+ F ++D + A ++ + + +R+I Sbjct: 260 FSRFGPIRS-CEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKMDNVLIDDRRIHVDFSQS 318 Query: 168 --RCNWATKGANSGEDQLASDSKSIVDVNNNFTENAKQKSNEDA 293 + W KG + K D N K K +DA Sbjct: 319 VAKVKWKGKGGKYTKSDFKEYEKE-QDKPANLVLKEKVKPKQDA 361
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 35.0 bits (79), Expect = 0.047 Identities = 18/50 (36%), Positives = 30/50 (60%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWAT 185 D ++++++ S+G+GFV+F N DA A L+G + R+I N AT Sbjct: 149 DVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 196
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 35.0 bits (79), Expect = 0.047 Identities = 19/45 (42%), Positives = 26/45 (57%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIR 170 D R+M D TG +RGY FV+F ++ AQ A+ N N +IR Sbjct: 190 DLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYN-----NHEIR 229
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 35.0 bits (79), Expect = 0.047 Identities = 19/45 (42%), Positives = 26/45 (57%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIR 170 D R+M D TG +RGY FV+F ++ AQ A+ N N +IR Sbjct: 190 DLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYN-----NHEIR 229
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 35.0 bits (79), Expect = 0.047 Identities = 18/50 (36%), Positives = 30/50 (60%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWAT 185 D ++++++ S+G+GFV+F N DA A L+G + R+I N AT Sbjct: 145 DVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 192
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 35.0 bits (79), Expect = 0.047 Identities = 17/57 (29%), Positives = 32/57 (56%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGE 206 D + D+ + +S+G+GFV F ++DA+ A++ +G + R++R A S E Sbjct: 47 DVHIPRDKYSRQSKGFGFVRFYERRDAEHALDRTDGKLVDGRELRVTLAKYDRPSDE 103
>MK67I_HUMAN (Q9BYG3) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (hNIFK) (Nucleolar phosphoprotein Nopp34) Length = 293 Score = 35.0 bits (79), Expect = 0.047 Identities = 14/46 (30%), Positives = 25/46 (54%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNW 179 R+ ++TG S+GY FV F ++ A+ +N G R + C++ Sbjct: 75 RLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNNYLFGERLLECHF 120
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 35.0 bits (79), Expect = 0.047 Identities = 18/50 (36%), Positives = 30/50 (60%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWAT 185 D ++++++ S+G+GFV+F N DA A L+G + R+I N AT Sbjct: 144 DVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNAT 191
>U2AFM_MOUSE (Q62377) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa| subunit related-protein 2 (U2(RNU2) small nuclear RNA auxillary factor 1-like 2) Length = 462 Score = 35.0 bits (79), Expect = 0.047 Identities = 12/35 (34%), Positives = 23/35 (65%) Frame = +3 Query: 75 RGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNW 179 RG +V +++++D Q+A + NG W RQ++C + Sbjct: 271 RGNVYVQYQSEEDCQAAFSVFNGRWYAGRQLQCEF 305
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 35.0 bits (79), Expect = 0.047 Identities = 19/45 (42%), Positives = 26/45 (57%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIR 170 D R+M D TG +RGY FV+F ++ AQ A+ N N +IR Sbjct: 100 DLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYN-----NHEIR 139
>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor| 50 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 416 Score = 34.7 bits (78), Expect = 0.062 Identities = 18/62 (29%), Positives = 36/62 (58%) Frame = +3 Query: 54 DQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDSKS 233 D TG S+GY F + + +I LNG+ LG++++ A+ GA + ++ A+ ++S Sbjct: 241 DAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQN-AANTTQS 299 Query: 234 IV 239 ++ Sbjct: 300 VM 301
>U2AF2_MOUSE (P26369) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) Length = 475 Score = 34.7 bits (78), Expect = 0.062 Identities = 17/49 (34%), Positives = 27/49 (55%) Frame = +3 Query: 54 DQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANS 200 D TG S+GY F + + AI LNG+ LG++++ A+ GA + Sbjct: 293 DSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKN 341
>U2AF2_HUMAN (P26368) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (hU2AF(65)) Length = 475 Score = 34.7 bits (78), Expect = 0.062 Identities = 17/49 (34%), Positives = 27/49 (55%) Frame = +3 Query: 54 DQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANS 200 D TG S+GY F + + AI LNG+ LG++++ A+ GA + Sbjct: 293 DSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKN 341
>MRD1_NEUCR (Q7SG09) Multiple RNA-binding domain-containing protein 1| Length = 827 Score = 34.7 bits (78), Expect = 0.062 Identities = 16/51 (31%), Positives = 30/51 (58%) Frame = +3 Query: 72 SRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASD 224 S G+GFV+FR + AQ+A+ ++G L +I + +G ++ E++ D Sbjct: 644 SMGFGFVAFRTKDQAQAALKVMDGQVLDAHKISVKASHRGLDAAEERRRED 694
>MRD1_CRYNE (Q5KJL5) Multiple RNA-binding domain-containing protein 1| Length = 769 Score = 34.7 bits (78), Expect = 0.062 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 5/70 (7%) Frame = +3 Query: 15 AYSPNCSDARVMWDQKTGR-----SRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNW 179 ++ P S ARV R S GYGFV F+ ++ A A+ L G + + + + Sbjct: 556 SHIPGFSFARVQMKPDPKRPGEKLSMGYGFVGFKTKEAATKALKALEGFEIDGKSLEVKF 615 Query: 180 ATKGANSGED 209 A +GA + Sbjct: 616 AQRGAEDDRE 625
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 34.7 bits (78), Expect = 0.062 Identities = 17/42 (40%), Positives = 27/42 (64%) Frame = +3 Query: 3 AFFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAI 128 +FF+ Y + + +++ D +TG S+GYGFVSF N D Q + Sbjct: 58 SFFARYG-SVKEVKIITD-RTGVSKGYGFVSFYNDVDVQKIV 97
>RSD1_SCHPO (O13845) RNA-binding protein rsd1| Length = 604 Score = 34.7 bits (78), Expect = 0.062 Identities = 13/34 (38%), Positives = 23/34 (67%) Frame = +3 Query: 69 RSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIR 170 RS+G+G++ +RN A++A+ +NG L R +R Sbjct: 378 RSKGFGYIQYRNPISARNALEKMNGFDLAGRNMR 411 Score = 30.8 bits (68), Expect = 0.89 Identities = 15/41 (36%), Positives = 25/41 (60%) Frame = +3 Query: 6 FFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAI 128 FF P DA+++ D+ +GRS+G +V F ++ Q+AI Sbjct: 259 FFEQAGP-VRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI 298 Score = 28.1 bits (61), Expect = 5.8 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = +3 Query: 78 GYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCN 176 G FV F N A+ AI L+ W G R I+ + Sbjct: 555 GQIFVKFENADFAEKAITGLHQRWFGGRTIKAS 587
>SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing| factor SRP40) (Delayed-early protein HRS) Length = 270 Score = 34.7 bits (78), Expect = 0.062 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Frame = +3 Query: 75 RGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQ-LASDSKSIVDVNN 251 RG+GFV F + +DA A+ +L+G L + ++ A + G + SD ++ D+ N Sbjct: 37 RGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHARARSRGGRGRGRYSDRLAVADLGN 96 Query: 252 N 254 + Sbjct: 97 D 97
>MRD1_USTMA (Q4PC17) Multiple RNA-binding domain-containing protein 1| Length = 858 Score = 34.7 bits (78), Expect = 0.062 Identities = 22/82 (26%), Positives = 40/82 (48%) Frame = +3 Query: 72 SRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDSKSIVDVNN 251 +RG+GFV + ++AQSA+ L L R + W+ LAS ++ VD+ Sbjct: 758 TRGFGFVEYSTVREAQSAMEALKHTHLLGRHLVLQWS---------HLASSTQQQVDMQR 808 Query: 252 NFTENAKQKSNEDAPENNPLYR 317 + T+ ++++A +P R Sbjct: 809 SKTKQHFVNTHDNAARADPSKR 830 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/60 (25%), Positives = 30/60 (50%) Frame = +3 Query: 72 SRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDSKSIVDVNN 251 S GYGFV F++ A++A ++G L + +A + A + ++S + + + N Sbjct: 666 SMGYGFVGFKSIDAARTAQKAMDGKVLDAHTLVVTFARRNAEASTTSISSGGSTKILIKN 725
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 34.7 bits (78), Expect = 0.062 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = +3 Query: 6 FFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAI 128 +F Y +D ++M D TGRSRG+GF+SF + Sbjct: 178 YFGKYG-TVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVV 217 Score = 32.7 bits (73), Expect = 0.23 Identities = 15/31 (48%), Positives = 23/31 (74%) Frame = +3 Query: 6 FFSAYSPNCSDARVMWDQKTGRSRGYGFVSF 98 FFS + DA++M D+ TG+SRG+GFV++ Sbjct: 262 FFSQWG-TIIDAQLMLDKDTGQSRGFGFVTY 291
>ACF_HUMAN (Q9NQ94) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 594 Score = 34.3 bits (77), Expect = 0.080 Identities = 17/44 (38%), Positives = 28/44 (63%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 + R+M D G +RGY FV+F N+ +A++AI LN + N ++ Sbjct: 84 EMRMMMDFN-GNNRGYAFVTFSNKVEAKNAIKQLNNYEIRNGRL 126 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +3 Query: 57 QKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 ++ + R Y FV F N++DA A+ LNG L I A Sbjct: 260 ERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 301
>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 34.3 bits (77), Expect = 0.080 Identities = 14/46 (30%), Positives = 28/46 (60%) Frame = +3 Query: 45 VMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 V+ D++TG S Y F+ F NQ+D + A + G+ + + +I +++ Sbjct: 279 VIRDKRTGDSLQYAFIEFENQKDCEQAYFKMQGVLIDDHRIHVDFS 324
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 34.3 bits (77), Expect = 0.080 Identities = 17/42 (40%), Positives = 27/42 (64%) Frame = +3 Query: 3 AFFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAI 128 +FF+ Y + + +++ D +TG S+GYGFVSF N D Q + Sbjct: 58 SFFARYG-SVKEVKIITD-RTGVSKGYGFVSFFNDVDVQKIV 97
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 34.3 bits (77), Expect = 0.080 Identities = 17/42 (40%), Positives = 27/42 (64%) Frame = +3 Query: 3 AFFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAI 128 +FF+ Y + + +++ D +TG S+GYGFVSF N D Q + Sbjct: 58 SFFARYG-SVKEVKIITD-RTGVSKGYGFVSFFNDVDVQKIV 97
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 34.3 bits (77), Expect = 0.080 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = +3 Query: 63 TGRSRGYGFVSFRNQQDAQSAINDL-NGLWLGNRQIRCNWA 182 TG RG+GFV F +QDA+ A N L + L R++ WA Sbjct: 862 TGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWA 902 Score = 31.6 bits (70), Expect = 0.52 Identities = 11/36 (30%), Positives = 25/36 (69%) Frame = +3 Query: 60 KTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 K G+ R +GF+ F+++++AQ+A+N + ++ +I Sbjct: 37 KDGKFRKFGFIGFKSEEEAQAALNHFHRSFIDTTRI 72
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 34.3 bits (77), Expect = 0.080 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Frame = +3 Query: 63 TGRSRGYGFVSFRNQQDAQSAINDL-NGLWLGNRQIRCNWA 182 TG RG+GFV F +QDA+ A N L + L R++ WA Sbjct: 870 TGTHRGFGFVDFLTKQDAKRAFNALCHSTHLYGRRLVLEWA 910
>ACF_PONPY (Q5R9H4) APOBEC1 complementation factor (APOBEC1-stimulating| protein) Length = 587 Score = 34.3 bits (77), Expect = 0.080 Identities = 17/44 (38%), Positives = 28/44 (63%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 + R+M D G +RGY FV+F N+ +A++AI LN + N ++ Sbjct: 84 EMRMMMDFN-GNNRGYAFVTFSNKLEAKNAIKQLNNYEIRNGRL 126 Score = 29.3 bits (64), Expect = 2.6 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +3 Query: 57 QKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 ++ + R Y FV F N++DA A+ LNG L I A Sbjct: 260 ERVKKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 301
>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) Length = 174 Score = 34.3 bits (77), Expect = 0.080 Identities = 15/42 (35%), Positives = 25/42 (59%) Frame = +3 Query: 54 DQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNW 179 D++TG +GY V + ++AQ+A+ LNG L + I +W Sbjct: 107 DRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 148
>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) (RNA-binding protein Y14) (Binder of OVCA1-1) (BOV-1) Length = 174 Score = 34.3 bits (77), Expect = 0.080 Identities = 15/42 (35%), Positives = 25/42 (59%) Frame = +3 Query: 54 DQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNW 179 D++TG +GY V + ++AQ+A+ LNG L + I +W Sbjct: 107 DRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 148
>PPIL4_HUMAN (Q8WUA2) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 33.9 bits (76), Expect = 0.10 Identities = 17/58 (29%), Positives = 32/58 (55%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 FS + P S V+ D KTG S Y F+ F ++D + A ++ + + +R+I +++ Sbjct: 260 FSRFGPIRS-CEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKMDNVLIDDRRIHVDFS 316
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 33.9 bits (76), Expect = 0.10 Identities = 15/43 (34%), Positives = 28/43 (65%) Frame = +3 Query: 54 DQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 D++TGR++G+ FVS+ ++ A A + L+G N +RC ++ Sbjct: 236 DKETGRAKGFAFVSYYDRDCAIKARDRLDGYGWNNLILRCEFS 278
>MYEF2_MOUSE (Q8C854) Myelin expression factor 2 (MyEF-2) (MEF-2)| Length = 591 Score = 33.9 bits (76), Expect = 0.10 Identities = 21/60 (35%), Positives = 31/60 (51%) Frame = +3 Query: 54 DQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDSKS 233 + K G+SRG G V+F +A AI+ NG +L +R + K ED + DSK+ Sbjct: 257 EDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHVKMDDKSV-PHEDYRSHDSKT 315 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/36 (33%), Positives = 22/36 (61%) Frame = +3 Query: 60 KTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 + G+S+G G V F + + A+ A +NG+ + R+I Sbjct: 548 ENGKSKGCGTVRFESAESAEKACRIMNGIKISGREI 583
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 33.9 bits (76), Expect = 0.10 Identities = 17/41 (41%), Positives = 26/41 (63%) Frame = +3 Query: 6 FFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAI 128 FF+ Y + + +++ D +TG S+GYGFVSF N D Q + Sbjct: 59 FFARYG-SVKEVKIITD-RTGVSKGYGFVSFFNDVDVQKIV 97
>U2AFL_MOUSE (Q64707) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa| subunit-related protein 1 (U2(RNU2) small nuclear RNA auxillary factor 1-like 1) (SP2) Length = 428 Score = 33.9 bits (76), Expect = 0.10 Identities = 11/35 (31%), Positives = 24/35 (68%) Frame = +3 Query: 75 RGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNW 179 RG +V ++++++ Q+A++ NG W RQ++C + Sbjct: 258 RGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEF 292
>U2AFL_HUMAN (Q15695) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa| subunit-related protein 1 (U2(RNU2) small nuclear RNA auxillary factor 1-like 1) Length = 479 Score = 33.9 bits (76), Expect = 0.10 Identities = 11/35 (31%), Positives = 24/35 (68%) Frame = +3 Query: 75 RGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNW 179 RG +V ++++++ Q+A++ NG W RQ++C + Sbjct: 272 RGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEF 306
>U2AFM_HUMAN (Q15696) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa| subunit related-protein 2 (U2(RNU2) small nuclear RNA auxillary factor 1-like 2) (NY-REN-20 antigen) Length = 482 Score = 33.9 bits (76), Expect = 0.10 Identities = 11/35 (31%), Positives = 24/35 (68%) Frame = +3 Query: 75 RGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNW 179 RG +V ++++++ Q+A++ NG W RQ++C + Sbjct: 267 RGNVYVQYQSEEECQAALSLFNGRWYAGRQLQCEF 301
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 33.5 bits (75), Expect = 0.14 Identities = 18/45 (40%), Positives = 28/45 (62%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNG 143 F Y P S +V+ D +G+S+G+GFV + + AQ A+ DL+G Sbjct: 219 FCEYGPTES-VKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHG 261 Score = 33.5 bits (75), Expect = 0.14 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 R+ D T GYG+V+FR DA+ A+N +N + + R W+ Sbjct: 48 RICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWS 94 Score = 32.7 bits (73), Expect = 0.23 Identities = 16/53 (30%), Positives = 35/53 (66%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 FS++ + S A+VM + G+ +G+G V F + ++A A++++NG +G++ + Sbjct: 322 FSSFG-SISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPL 371 Score = 31.6 bits (70), Expect = 0.52 Identities = 20/53 (37%), Positives = 29/53 (54%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 FSA+ N +V+ D S+GY +V F + A AI +NG+ L NRQ+ Sbjct: 126 FSAFG-NILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 33.5 bits (75), Expect = 0.14 Identities = 18/45 (40%), Positives = 28/45 (62%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNG 143 F Y P S +V+ D +G+S+G+GFV + + AQ A+ DL+G Sbjct: 219 FCEYGPTES-VKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHG 261 Score = 33.5 bits (75), Expect = 0.14 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 R+ D T GYG+V+FR DA+ A+N +N + + R W+ Sbjct: 48 RICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWS 94 Score = 32.7 bits (73), Expect = 0.23 Identities = 16/53 (30%), Positives = 35/53 (66%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 FS++ + S A+VM + G+ +G+G V F + ++A A++++NG +G++ + Sbjct: 322 FSSFG-SISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPL 371 Score = 31.6 bits (70), Expect = 0.52 Identities = 20/53 (37%), Positives = 29/53 (54%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 FSA+ N +V+ D S+GY +V F + A AI +NG+ L NRQ+ Sbjct: 126 FSAFG-NILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 33.5 bits (75), Expect = 0.14 Identities = 18/45 (40%), Positives = 28/45 (62%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNG 143 F Y P S +V+ D +G+S+G+GFV + + AQ A+ DL+G Sbjct: 219 FCEYGPTES-VKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHG 261 Score = 33.5 bits (75), Expect = 0.14 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 R+ D T GYG+V+FR DA+ A+N +N + + R W+ Sbjct: 48 RICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWS 94 Score = 32.7 bits (73), Expect = 0.23 Identities = 16/53 (30%), Positives = 35/53 (66%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 FS++ + S A+VM + G+ +G+G V F + ++A A++++NG +G++ + Sbjct: 322 FSSFG-SISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPL 371 Score = 31.6 bits (70), Expect = 0.52 Identities = 20/53 (37%), Positives = 29/53 (54%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 FSA+ N +V+ D S+GY +V F + A AI +NG+ L NRQ+ Sbjct: 126 FSAFG-NILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 33.5 bits (75), Expect = 0.14 Identities = 18/45 (40%), Positives = 28/45 (62%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNG 143 F Y P S +V+ D +G+S+G+GFV + + AQ A+ DL+G Sbjct: 219 FCEYGPTES-VKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHG 261 Score = 33.5 bits (75), Expect = 0.14 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 R+ D T GYG+V+FR DA+ A+N +N + + R W+ Sbjct: 48 RICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWS 94 Score = 32.7 bits (73), Expect = 0.23 Identities = 16/53 (30%), Positives = 35/53 (66%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 FS++ + S A+VM + G+ +G+G V F + ++A A++++NG +G++ + Sbjct: 322 FSSFG-SISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPL 371 Score = 31.6 bits (70), Expect = 0.52 Identities = 20/53 (37%), Positives = 29/53 (54%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 FSA+ N +V+ D S+GY +V F + A AI +NG+ L NRQ+ Sbjct: 126 FSAFG-NILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 33.5 bits (75), Expect = 0.14 Identities = 18/45 (40%), Positives = 28/45 (62%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNG 143 F Y P S +V+ D +G+S+G+GFV + + AQ A+ DL+G Sbjct: 219 FCEYGPTES-VKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHG 261 Score = 33.5 bits (75), Expect = 0.14 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 R+ D T GYG+V+FR DA+ A+N +N + + R W+ Sbjct: 48 RICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWS 94 Score = 32.7 bits (73), Expect = 0.23 Identities = 16/53 (30%), Positives = 35/53 (66%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 FS++ + S A+VM + G+ +G+G V F + ++A A++++NG +G++ + Sbjct: 322 FSSFG-SISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPL 371 Score = 31.6 bits (70), Expect = 0.52 Identities = 20/53 (37%), Positives = 29/53 (54%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 FSA+ N +V+ D S+GY +V F + A AI +NG+ L NRQ+ Sbjct: 126 FSAFG-NILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 33.5 bits (75), Expect = 0.14 Identities = 18/45 (40%), Positives = 28/45 (62%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNG 143 F Y P S +V+ D +G+S+G+GFV + + AQ A+ DL+G Sbjct: 219 FCEYGPTES-VKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHG 261 Score = 33.5 bits (75), Expect = 0.14 Identities = 16/47 (34%), Positives = 25/47 (53%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 R+ D T GYG+V+FR DA+ A+N +N + + R W+ Sbjct: 48 RICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWS 94 Score = 32.7 bits (73), Expect = 0.23 Identities = 16/53 (30%), Positives = 35/53 (66%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 FS++ + S A+VM + G+ +G+G V F + ++A A++++NG +G++ + Sbjct: 322 FSSFG-SISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPL 371 Score = 31.6 bits (70), Expect = 0.52 Identities = 20/53 (37%), Positives = 29/53 (54%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 FSA+ N +V+ D S+GY +V F + A AI +NG+ L NRQ+ Sbjct: 126 FSAFG-NILSCKVVCDDNG--SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 33.5 bits (75), Expect = 0.14 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%) Frame = +3 Query: 39 ARVMWDQK---TGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGE 206 A+V+ + K GRSRGYGFV FR+ ++A + WL + + +G N E Sbjct: 538 AKVIMEVKGSTAGRSRGYGFVEFRDHKNALMGLR-----WLNCHAVTSDEILEGLNDDE 591 Score = 30.4 bits (67), Expect = 1.2 Identities = 26/95 (27%), Positives = 42/95 (44%) Frame = +3 Query: 6 FFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWAT 185 FFS ++P A V+ D RSRG+GFVSF + D + A+ +R + A Sbjct: 45 FFSNFAP-IKHAVVVKDTNK-RSRGFGFVSFAVEDDTKEALAKARKTKFNGHILRVDIAK 102 Query: 186 KGANSGEDQLASDSKSIVDVNNNFTENAKQKSNED 290 + D+ S+ + +E ++NED Sbjct: 103 R-----RDRSKKTSEVVEKSTPESSEKITGQNNED 132
>HNRPR_HUMAN (O43390) Heterogeneous nuclear ribonucleoprotein R (hnRNP R)| Length = 633 Score = 33.5 bits (75), Expect = 0.14 Identities = 13/31 (41%), Positives = 22/31 (70%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAI 128 D R+M D +G++RGY F++F ++ AQ A+ Sbjct: 193 DLRLMMDPLSGQNRGYAFITFCGKEAAQEAV 223
>ROA1_RAT (P04256) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP) Length = 319 Score = 33.1 bits (74), Expect = 0.18 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAIN 131 +D VM D T RSRG+GFV++ ++ +A+N Sbjct: 40 TDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72
>ROA1_MOUSE (P49312) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) (HDP-1) (Topoisomerase-inhibitor suppressed) Length = 319 Score = 33.1 bits (74), Expect = 0.18 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAIN 131 +D VM D T RSRG+GFV++ ++ +A+N Sbjct: 40 TDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 33.1 bits (74), Expect = 0.18 Identities = 15/52 (28%), Positives = 28/52 (53%) Frame = +3 Query: 72 SRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDS 227 S G+GF F+ + AQ+A+ +NG L + + KG ++ E++ D+ Sbjct: 637 SMGFGFADFKTKAQAQAALAVMNGYTLDRHTLVVRASHKGMDAAEERRKEDT 688 Score = 30.8 bits (68), Expect = 0.89 Identities = 14/55 (25%), Positives = 31/55 (56%) Frame = +3 Query: 72 SRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDSKSI 236 +RG+GF F + ++A++A++ L L R++ +A + A E+++ K + Sbjct: 736 ARGFGFADFVSAREAENAMDALKNTHLLGRRLVLEFANEEAIDAEEEIQRIEKKV 790
>ROA1_BOVIN (P09867) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (Unwinding protein 1) (UP1) (Fragment) Length = 195 Score = 33.1 bits (74), Expect = 0.18 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAIN 131 +D VM D T RSRG+GFV++ ++ +A+N Sbjct: 40 TDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72
>ROA1_HUMAN (P09651) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) Length = 371 Score = 33.1 bits (74), Expect = 0.18 Identities = 14/33 (42%), Positives = 22/33 (66%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAIN 131 +D VM D T RSRG+GFV++ ++ +A+N Sbjct: 40 TDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN 72
>RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi)| Length = 165 Score = 32.7 bits (73), Expect = 0.23 Identities = 14/42 (33%), Positives = 24/42 (57%) Frame = +3 Query: 54 DQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNW 179 D++TG S+GY V + + A +A LNG + + I+ +W Sbjct: 107 DRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 148
>TRA2_DROVI (O02008) Transformer-2 sex-determining protein| Length = 272 Score = 32.7 bits (73), Expect = 0.23 Identities = 16/43 (37%), Positives = 26/43 (60%) Frame = +3 Query: 54 DQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 D T RSRG+ F+ F N DA+ A + G+ + R+IR +++ Sbjct: 139 DAHTHRSRGFCFIYFENLGDARVAKDACTGMEVDGRRIRVDYS 181
>MK67I_MOUSE (Q91VE6) MKI67 FHA domain-interacting nucleolar phosphoprotein| (Nucleolar protein interacting with the FHA domain of pKI-67) (mNIFK) Length = 317 Score = 32.7 bits (73), Expect = 0.23 Identities = 15/57 (26%), Positives = 28/57 (49%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNW 179 + A + S R+ ++TG S+GY FV F ++ A+ ++ G R + C + Sbjct: 66 YCAQFGDISRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMDNYLFGERLLSCKF 122
>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 494 Score = 32.7 bits (73), Expect = 0.23 Identities = 13/46 (28%), Positives = 29/46 (63%) Frame = +3 Query: 45 VMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 V+ DQKTG S Y F+ F +++ + A + ++ + + +R+I +++ Sbjct: 284 VIRDQKTGDSLQYAFIEFEDKKSCEEAYSKMDSVLIDDRRIHVDFS 329
>YHH5_YEAST (P38760) Hypothetical 75.9 kDa protein in SPO13-ARG4 intergenic| region Length = 659 Score = 32.7 bits (73), Expect = 0.23 Identities = 14/34 (41%), Positives = 24/34 (70%) Frame = +3 Query: 39 ARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLN 140 A+V D T +S GYG+++F+++ DA+SA + N Sbjct: 140 AKVCRDFLTKKSLGYGYLNFKDKNDAESARKEFN 173
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 32.3 bits (72), Expect = 0.31 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAIN 131 D + D TGRSRG+GF+ F++ + ++ Sbjct: 103 DCTIKMDPNTGRSRGFGFILFKDSSSVEKVLD 134
>U2AF2_CAEEL (P90978) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 496 Score = 32.3 bits (72), Expect = 0.31 Identities = 16/61 (26%), Positives = 28/61 (45%) Frame = +3 Query: 66 GRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDSKSIVDV 245 G S+GY F + + AI LNG+ LG++Q+ A L + + +I + Sbjct: 328 GNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQQRHNTNLPNSASAIAGI 387 Query: 246 N 248 + Sbjct: 388 D 388
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 32.3 bits (72), Expect = 0.31 Identities = 17/51 (33%), Positives = 25/51 (49%) Frame = +3 Query: 69 RSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLAS 221 R GY FV F + +DA+ AI+ +G ++R A G S +D S Sbjct: 43 RPPGYAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGS 93
>RBM14_PONPY (Q5RC41) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 32.3 bits (72), Expect = 0.31 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = +3 Query: 75 RGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSG 203 + Y FV + DA++AI LNG + ++I +TKG G Sbjct: 112 KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKG 154
>RBM14_MOUSE (Q8C2Q3) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 32.3 bits (72), Expect = 0.31 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = +3 Query: 75 RGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSG 203 + Y FV + DA++AI LNG + ++I +TKG G Sbjct: 112 KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKG 154
>RBM14_HUMAN (Q96PK6) RNA-binding protein 14 (RNA-binding motif protein 14)| (RRM-containing coactivator activator/modulator) (Synaptotagmin-interacting protein) (SYT-interacting protein) Length = 669 Score = 32.3 bits (72), Expect = 0.31 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = +3 Query: 75 RGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSG 203 + Y FV + DA++AI LNG + ++I +TKG G Sbjct: 112 KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKG 154
>RBM14_BOVIN (Q5EA36) RNA-binding protein 14 (RNA-binding motif protein 14)| Length = 669 Score = 32.3 bits (72), Expect = 0.31 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = +3 Query: 75 RGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSG 203 + Y FV + DA++AI LNG + ++I +TKG G Sbjct: 112 KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKKG 154
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 32.3 bits (72), Expect = 0.31 Identities = 21/60 (35%), Positives = 33/60 (55%) Frame = +3 Query: 9 FSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATK 188 FSAY +++ D + G S+GYGFV+F +Q+AQ D + L +R++ A K Sbjct: 53 FSAYG-TVKSTKIIVD-RAGVSKGYGFVTFETEQEAQRLQADGECVVLRDRKLNIAPAIK 110
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 32.3 bits (72), Expect = 0.31 Identities = 16/46 (34%), Positives = 26/46 (56%) Frame = +3 Query: 54 DQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKG 191 D K+GR + FV F + +DA+ A+ +G R+IR + T+G Sbjct: 39 DIKSGRGPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEF-TRG 83
>PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 32.3 bits (72), Expect = 0.31 Identities = 13/46 (28%), Positives = 28/46 (60%) Frame = +3 Query: 45 VMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 V+ D++TG S Y F+ F +Q+D + A + G+ + + +I +++ Sbjct: 279 VIRDKRTGDSLQYAFIEFESQKDCEQAYFKMQGVLIDDHRIHVDFS 324
>U2AF2_CAEBR (P90727) Splicing factor U2AF 65 kDa subunit (U2 auxiliary factor| 65 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF65) Length = 488 Score = 32.3 bits (72), Expect = 0.31 Identities = 16/61 (26%), Positives = 28/61 (45%) Frame = +3 Query: 66 GRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDSKSIVDV 245 G S+GY F + + AI LNG+ LG++Q+ A L + + +I + Sbjct: 319 GNSKGYAFAEYLDPTLTDQAIAGLNGMQLGDKQLVVQLACANQTRHNTHLPNSASAIAGI 378 Query: 246 N 248 + Sbjct: 379 D 379
>RAVR2_HUMAN (Q9HCJ3) Protein raver-2| Length = 691 Score = 32.3 bits (72), Expect = 0.31 Identities = 15/45 (33%), Positives = 24/45 (53%) Frame = +3 Query: 45 VMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNW 179 +++ + TG S+GYGFV + + A A +L G LG + W Sbjct: 173 LVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQLGASALFAQW 217
>RBM5_HUMAN (P52756) RNA-binding protein 5 (RNA-binding motif protein 5)| (Putative tumor suppressor LUCA15) (G15 protein) (NY-REN-9 antigen) Length = 815 Score = 32.3 bits (72), Expect = 0.31 Identities = 17/33 (51%), Positives = 22/33 (66%) Frame = +3 Query: 24 PNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQS 122 P +D R+M +KTG SRG+ FV F + QDA S Sbjct: 124 PQPADVRLM-KRKTGVSRGFAFVEFYHLQDATS 155
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 32.3 bits (72), Expect = 0.31 Identities = 14/52 (26%), Positives = 29/52 (55%) Frame = +3 Query: 72 SRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDS 227 S G+GFV F+++ A +A++ +NG L ++ + +G ++ + DS Sbjct: 664 SMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQDS 715 Score = 32.3 bits (72), Expect = 0.31 Identities = 16/49 (32%), Positives = 27/49 (55%) Frame = +3 Query: 60 KTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGE 206 K G SR + F+ F+N++DA AI LN ++ +I + A ++ E Sbjct: 41 KEGVSRRFAFIGFKNEEDADKAIRYLNKSYVETSRIEVHRALDYRSANE 89
>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing| factor SRP55) Length = 344 Score = 32.3 bits (72), Expect = 0.31 Identities = 18/52 (34%), Positives = 27/52 (51%) Frame = +3 Query: 78 GYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDSKS 233 GYGFV F + +DA A+ +LNG L ++ A +G D + S+S Sbjct: 36 GYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA-RGPRRDRDGYSYGSRS 86
>ROA1_MACMU (Q28521) Heterogeneous nuclear ribonucleoprotein A1| (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 319 Score = 32.0 bits (71), Expect = 0.40 Identities = 14/33 (42%), Positives = 21/33 (63%) Frame = +3 Query: 33 SDARVMWDQKTGRSRGYGFVSFRNQQDAQSAIN 131 +D VM D T RSRG+GFV++ + +A+N Sbjct: 40 TDCVVMRDPNTKRSRGFGFVTYATVEKVDAAMN 72
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 32.0 bits (71), Expect = 0.40 Identities = 20/69 (28%), Positives = 34/69 (49%) Frame = +3 Query: 60 KTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDSKSIV 239 + G+ + +GFV F++ + AI LNG+ L R I + + S E S +S V Sbjct: 45 REGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVQYRFGSSRSSEPANQS-FESCV 103 Query: 240 DVNNNFTEN 266 +N++ N Sbjct: 104 KINSHNYRN 112
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 32.0 bits (71), Expect = 0.40 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 3/75 (4%) Frame = +3 Query: 66 GRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDSKSIVDV 245 G S+G+ F F+N DA+ AI+ L+G ++ +A G N ++++D Sbjct: 348 GSSKGFCFCEFKNPSDAEVAISGLDGKDTYGNKLHAQFACVGLN----------QAMIDK 397 Query: 246 NNN---FTENAKQKS 281 +N TE AK S Sbjct: 398 SNGMAILTELAKASS 412
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 32.0 bits (71), Expect = 0.40 Identities = 16/41 (39%), Positives = 25/41 (60%) Frame = +3 Query: 6 FFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAI 128 F+S + +D VM D T RSRG+GFV+F + + +A+ Sbjct: 42 FYSQFG-EITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAM 81
>RSP31_ARATH (P92964) Arginine/serine-rich splicing factor RSP31| Length = 264 Score = 31.6 bits (70), Expect = 0.52 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 9/80 (11%) Frame = +3 Query: 18 YSPNCSDARVMWDQ-----KTGRSRGYGFVSFRNQQDAQSAINDLNGLWLG--NRQIRCN 176 Y SD ++D+ + GY FV F +++DA+ AI L+ G R++ Sbjct: 11 YETRQSDLERLFDKYGRVDRVDMKSGYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVE 70 Query: 177 WA--TKGANSGEDQLASDSK 230 WA +G G+ + S+ K Sbjct: 71 WAKGERGRPRGDAKAPSNLK 90
>PPIL4_GIBZE (Q4IE79) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 605 Score = 31.6 bits (70), Expect = 0.52 Identities = 13/46 (28%), Positives = 28/46 (60%) Frame = +3 Query: 45 VMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 V+ DQKTG S Y F+ + ++ ++A + G+ + +R+I +++ Sbjct: 282 VIRDQKTGDSLQYAFIEYEDKASCEAAYFKMQGVLIDDRRIHVDFS 327
>SRR55_DROME (P26686) Serine-arginine protein 55 (SRP55) (Protein enhancer of| deformed) (52-kDa bracketing protein) (B52 protein) Length = 375 Score = 31.6 bits (70), Expect = 0.52 Identities = 22/81 (27%), Positives = 31/81 (38%) Frame = +3 Query: 78 GYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGEDQLASDSKSIVDVNNNF 257 GYGFV F + +DA A+ +LNG L ++ A A D Sbjct: 37 GYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGG 96 Query: 258 TENAKQKSNEDAPENNPLYRT 320 N K K++ + P RT Sbjct: 97 RYNEKNKNSRSSSRYGPPLRT 117
>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)| (PPIase cyp6) (Rotamase cyp8) Length = 432 Score = 31.6 bits (70), Expect = 0.52 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 6/70 (8%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGA------NSG 203 +V+ D++TG S Y F+ F N++ + A + + + + +I +++ A NS Sbjct: 274 QVIRDKETGDSLQYAFIEFDNKESVEKAYFKMQNVLIDDSRIHVDFSQSVARYRQYYNSN 333 Query: 204 EDQLASDSKS 233 D+ S S+S Sbjct: 334 RDRKRSSSRS 343
>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 278 Score = 31.6 bits (70), Expect = 0.52 Identities = 13/48 (27%), Positives = 25/48 (52%) Frame = +3 Query: 42 RVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWAT 185 R+ +KTG S+GY +V + + A+ + +N R ++C + T Sbjct: 71 RLSRSKKTGNSKGYAYVEYECDEVAKIVADTMNNYLFCERLLKCEFVT 118
>RAVR2_MOUSE (Q7TPD6) Protein raver-2| Length = 673 Score = 31.6 bits (70), Expect = 0.52 Identities = 14/45 (31%), Positives = 24/45 (53%) Frame = +3 Query: 45 VMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNW 179 +++ + TG S+GYGFV + + A A +L G +G + W Sbjct: 162 LVYSEVTGHSKGYGFVEYMKKDFAAKARLELLGRQMGASALFAQW 206
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 31.6 bits (70), Expect = 0.52 Identities = 11/32 (34%), Positives = 19/32 (59%) Frame = +3 Query: 36 DARVMWDQKTGRSRGYGFVSFRNQQDAQSAIN 131 D + D TGRSRG+GF+ F++ + ++ Sbjct: 96 DCTIKMDPNTGRSRGFGFILFKDAASVEKVLD 127
>RBM12_MACMU (Q8SQ27) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 932 Score = 31.2 bits (69), Expect = 0.68 Identities = 20/62 (32%), Positives = 33/62 (53%) Frame = +3 Query: 3 AFFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 + + AY PN G++ G GFV FRN+ D ++A+ + ++GNR I+ + Sbjct: 459 SIYIAYGPN------------GKATGEGFVEFRNEADYKAAL-CRHKQYMGNRFIQVHPI 505 Query: 183 TK 188 TK Sbjct: 506 TK 507 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/55 (27%), Positives = 30/55 (54%) Frame = +3 Query: 6 FFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIR 170 FF Y + +++K G G V+F ++ +A +A+ DLN +G+R+++ Sbjct: 875 FFYGYQVIPGSVCLKYNEK-GMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 928
>RBM12_HUMAN (Q9NTZ6) RNA-binding protein 12 (RNA-binding motif protein 12)| (SH3/WW domain anchor protein in the nucleus) (SWAN) Length = 932 Score = 31.2 bits (69), Expect = 0.68 Identities = 20/62 (32%), Positives = 33/62 (53%) Frame = +3 Query: 3 AFFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWA 182 + + AY PN G++ G GFV FRN+ D ++A+ + ++GNR I+ + Sbjct: 459 SIYIAYGPN------------GKATGEGFVEFRNEADYKAAL-CRHKQYMGNRFIQVHPI 505 Query: 183 TK 188 TK Sbjct: 506 TK 507 Score = 28.9 bits (63), Expect = 3.4 Identities = 15/55 (27%), Positives = 30/55 (54%) Frame = +3 Query: 6 FFSAYSPNCSDARVMWDQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIR 170 FF Y + +++K G G V+F ++ +A +A+ DLN +G+R+++ Sbjct: 875 FFYGYQVIPGSVCLKYNEK-GMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVK 928
>DAZ4_HUMAN (Q86SG3) Deleted in azoospermia protein 4| Length = 579 Score = 31.2 bits (69), Expect = 0.68 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +3 Query: 60 KTGRSRGYGFVSFRNQQDAQSAI 128 +TG S+GYGFVSF N D Q + Sbjct: 240 RTGVSKGYGFVSFVNDVDVQKIV 262 Score = 31.2 bits (69), Expect = 0.68 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +3 Query: 60 KTGRSRGYGFVSFRNQQDAQSAI 128 +TG S+GYGFVSF N D Q + Sbjct: 75 RTGVSKGYGFVSFVNDVDVQKIV 97
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 31.2 bits (69), Expect = 0.68 Identities = 16/51 (31%), Positives = 25/51 (49%) Frame = +3 Query: 54 DQKTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQIRCNWATKGANSGE 206 + K G+SRG G V+F +A AI+ NG L +R + + G+ Sbjct: 235 EDKDGKSRGIGIVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGD 285 Score = 30.0 bits (66), Expect = 1.5 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = +3 Query: 60 KTGRSRGYGFVSFRNQQDAQSAINDLNGLWLGNRQI 167 + G+S+G G V F + + A+ A +NG+ L R+I Sbjct: 685 ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREI 720 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,764,058 Number of Sequences: 219361 Number of extensions: 936266 Number of successful extensions: 3491 Number of sequences better than 10.0: 344 Number of HSP's better than 10.0 without gapping: 3169 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3482 length of database: 80,573,946 effective HSP length: 83 effective length of database: 62,366,983 effective search space used: 1496807592 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
