| Clone Name | baet58e12 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK100355.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083I20, full insert sequence Length = 1369 Score = 208 bits (105), Expect = 7e-51 Identities = 174/197 (88%) Strand = Plus / Plus Query: 94 aagttcaaccggagtaacccggcggtgaagcggatcctgcaggaggtgaaggagatgcag 153 |||| ||||||| | ||||||||||||||||||||||| |||||||| |||||||||||| Sbjct: 124 aagtacaaccggggcaacccggcggtgaagcggatccttcaggaggtcaaggagatgcag 183 Query: 154 tctaatccttcccccgatttcatggccctgcccctcgaggaggacatttttgagtggcag 213 || || || ||||| || ||||||||| ||||||||||||||||||| || |||||||| Sbjct: 184 tccaacccgtccccggacttcatggccatgcccctcgaggaggacatcttcgagtggcaa 243 Query: 214 tttgctatcctggggcctcgagacagcgaatttgagggaggaatctaccacgggaggatc 273 ||||| ||||||||||| |||||||| || |||||||||||||||||||| || |||||| Sbjct: 244 tttgcgatcctggggccacgagacagtgagtttgagggaggaatctaccatggaaggatc 303 Query: 274 cagttgccctcagacta 290 ||| |||| || ||||| Sbjct: 304 cagctgccatcggacta 320
>gb|BT024017.1| Zea mays clone EL01N0401A06 mRNA sequence Length = 1152 Score = 172 bits (87), Expect = 4e-40 Identities = 159/183 (86%) Strand = Plus / Plus Query: 94 aagttcaaccggagtaacccggcggtgaagcggatcctgcaggaggtgaaggagatgcag 153 |||| |||||| || |||||||| ||||||||||||||||||||||| |||||||||||| Sbjct: 49 aagtacaaccgaagcaacccggcagtgaagcggatcctgcaggaggttaaggagatgcag 108 Query: 154 tctaatccttcccccgatttcatggccctgcccctcgaggaggacatttttgagtggcag 213 || || || || ||||| ||||||||||| ||||||||||| ||||| || |||||||| Sbjct: 109 tccaacccctcacccgacttcatggccctccccctcgaggaagacatcttcgagtggcaa 168 Query: 214 tttgctatcctggggcctcgagacagcgaatttgagggaggaatctaccacgggaggatc 273 ||||||||||| || || |||||||||| |||||||| |||||||| || || |||||| Sbjct: 169 tttgctatccttggcccgagagacagcgagtttgagggtggaatctatcatggcaggatc 228 Query: 274 cag 276 ||| Sbjct: 229 cag 231
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 111 bits (56), Expect = 1e-21 Identities = 89/100 (89%) Strand = Plus / Plus Query: 94 aagttcaaccggagtaacccggcggtgaagcggatcctgcaggaggtgaaggagatgcag 153 |||| ||||||| | ||||||||||||||||||||||| |||||||| |||||||||||| Sbjct: 10934811 aagtacaaccggggcaacccggcggtgaagcggatccttcaggaggtcaaggagatgcag 10934870 Query: 154 tctaatccttcccccgatttcatggccctgcccctcgagg 193 || || || ||||| || ||||||||| |||||||||||| Sbjct: 10934871 tccaacccgtccccggacttcatggccatgcccctcgagg 10934910 Score = 103 bits (52), Expect = 3e-19 Identities = 88/100 (88%) Strand = Plus / Plus Query: 191 aggaggacatttttgagtggcagtttgctatcctggggcctcgagacagcgaatttgagg 250 |||||||||| || |||||||| ||||| ||||||||||| |||||||| || ||||||| Sbjct: 10935343 aggaggacatcttcgagtggcaatttgcgatcctggggccacgagacagtgagtttgagg 10935402 Query: 251 gaggaatctaccacgggaggatccagttgccctcagacta 290 ||||||||||||| || ||||||||| |||| || ||||| Sbjct: 10935403 gaggaatctaccatggaaggatccagctgccatcggacta 10935442
>gb|AC134769.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1145F05, from chromosome 3, complete sequence Length = 127348 Score = 111 bits (56), Expect = 1e-21 Identities = 89/100 (89%) Strand = Plus / Minus Query: 94 aagttcaaccggagtaacccggcggtgaagcggatcctgcaggaggtgaaggagatgcag 153 |||| ||||||| | ||||||||||||||||||||||| |||||||| |||||||||||| Sbjct: 46218 aagtacaaccggggcaacccggcggtgaagcggatccttcaggaggtcaaggagatgcag 46159 Query: 154 tctaatccttcccccgatttcatggccctgcccctcgagg 193 || || || ||||| || ||||||||| |||||||||||| Sbjct: 46158 tccaacccgtccccggacttcatggccatgcccctcgagg 46119 Score = 103 bits (52), Expect = 3e-19 Identities = 88/100 (88%) Strand = Plus / Minus Query: 191 aggaggacatttttgagtggcagtttgctatcctggggcctcgagacagcgaatttgagg 250 |||||||||| || |||||||| ||||| ||||||||||| |||||||| || ||||||| Sbjct: 45686 aggaggacatcttcgagtggcaatttgcgatcctggggccacgagacagtgagtttgagg 45627 Query: 251 gaggaatctaccacgggaggatccagttgccctcagacta 290 ||||||||||||| || ||||||||| |||| || ||||| Sbjct: 45626 gaggaatctaccatggaaggatccagctgccatcggacta 45587
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 111 bits (56), Expect = 1e-21 Identities = 89/100 (89%) Strand = Plus / Plus Query: 94 aagttcaaccggagtaacccggcggtgaagcggatcctgcaggaggtgaaggagatgcag 153 |||| ||||||| | ||||||||||||||||||||||| |||||||| |||||||||||| Sbjct: 10932912 aagtacaaccggggcaacccggcggtgaagcggatccttcaggaggtcaaggagatgcag 10932971 Query: 154 tctaatccttcccccgatttcatggccctgcccctcgagg 193 || || || ||||| || ||||||||| |||||||||||| Sbjct: 10932972 tccaacccgtccccggacttcatggccatgcccctcgagg 10933011 Score = 103 bits (52), Expect = 3e-19 Identities = 88/100 (88%) Strand = Plus / Plus Query: 191 aggaggacatttttgagtggcagtttgctatcctggggcctcgagacagcgaatttgagg 250 |||||||||| || |||||||| ||||| ||||||||||| |||||||| || ||||||| Sbjct: 10933444 aggaggacatcttcgagtggcaatttgcgatcctggggccacgagacagtgagtttgagg 10933503 Query: 251 gaggaatctaccacgggaggatccagttgccctcagacta 290 ||||||||||||| || ||||||||| |||| || ||||| Sbjct: 10933504 gaggaatctaccatggaaggatccagctgccatcggacta 10933543
>gb|BT020530.1| Arabidopsis thaliana At3g17000 mRNA, complete cds Length = 930 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 112 ccggcggtgaagcggatcctgcaggaggtgaaggagatgcagtctaatcc 161 |||||||||||| |||| |||||||||| ||||||||||| ||||||| Sbjct: 31 ccggcggtgaagaggattttgcaggaggttaaggagatgcaagctaatcc 80
>ref|NM_112576.2| Arabidopsis thaliana ubiquitin conjugating enzyme AT3G17000 mRNA, complete cds Length = 1263 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 112 ccggcggtgaagcggatcctgcaggaggtgaaggagatgcagtctaatcc 161 |||||||||||| |||| |||||||||| ||||||||||| ||||||| Sbjct: 148 ccggcggtgaagaggattttgcaggaggttaaggagatgcaagctaatcc 197
>gb|AF386935.1|AF386935 Arabidopsis thaliana Unknown protein (K14A17.7) mRNA, complete cds Length = 1194 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 112 ccggcggtgaagcggatcctgcaggaggtgaaggagatgcagtctaatcc 161 |||||||||||| |||| |||||||||| ||||||||||| ||||||| Sbjct: 147 ccggcggtgaagaggattttgcaggaggttaaggagatgcaagctaatcc 196
>emb|BX822676.1|CNS0A64H Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB58ZB02 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1158 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 112 ccggcggtgaagcggatcctgcaggaggtgaaggagatgcagtctaatcc 161 |||||||||||| |||| |||||||||| ||||||||||| ||||||| Sbjct: 80 ccggcggtgaagaggattttgcaggaggttaaggagatgcaagctaatcc 129
>emb|BX823821.1|CNS0A5CS Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS7ZD11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1128 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 112 ccggcggtgaagcggatcctgcaggaggtgaaggagatgcagtctaatcc 161 |||||||||||| |||| |||||||||| ||||||||||| ||||||| Sbjct: 93 ccggcggtgaagaggattttgcaggaggttaaggagatgcaagctaatcc 142
>emb|BX825160.1|CNS0A54S Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL17ZE04 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1195 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 112 ccggcggtgaagcggatcctgcaggaggtgaaggagatgcagtctaatcc 161 |||||||||||| |||| |||||||||| ||||||||||| ||||||| Sbjct: 112 ccggcggtgaagaggattttgcaggaggttaaggagatgcaagctaatcc 161
>dbj|AB026636.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K14A17 Length = 92620 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 112 ccggcggtgaagcggatcctgcaggaggtgaaggagatgcagtctaatcc 161 |||||||||||| |||| |||||||||| ||||||||||| ||||||| Sbjct: 29126 ccggcggtgaagaggattttgcaggaggttaaggagatgcaagctaatcc 29175
>gb|DQ027045.1| Arabidopsis thaliana ubiquitinating enzyme (At3g17000) mRNA, complete cds Length = 822 Score = 52.0 bits (26), Expect = 0.001 Identities = 44/50 (88%) Strand = Plus / Plus Query: 112 ccggcggtgaagcggatcctgcaggaggtgaaggagatgcagtctaatcc 161 |||||||||||| |||| |||||||||| ||||||||||| ||||||| Sbjct: 31 ccggcggtgaagaggattttgcaggaggttaaggagatgcaagctaatcc 80
>emb|AJ718833.1| Nicotiana tabacum cDNA-AFLP-fragment BSTC34-2-155, cultivar Bright Yellow 2 Length = 111 Score = 48.1 bits (24), Expect = 0.016 Identities = 57/68 (83%) Strand = Plus / Minus Query: 145 gagatgcagtctaatccttcccccgatttcatggccctgcccctcgaggaggacattttt 204 |||||||| |||||||||||| ||||||||| ||| || ||||||||| |||| ||| Sbjct: 110 gagatgcaatctaatccttccgatgatttcatgagccttcctctcgaggagaacatcttt 51 Query: 205 gagtggca 212 || ||||| Sbjct: 50 gaatggca 43
>emb|AL163051.5|CNS01RIA Human chromosome 14 DNA sequence BAC R-872J21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 188020 Score = 42.1 bits (21), Expect = 0.96 Identities = 24/25 (96%) Strand = Plus / Minus Query: 127 atcctgcaggaggtgaaggagatgc 151 ||||||||||||||||||| ||||| Sbjct: 157864 atcctgcaggaggtgaaggggatgc 157840
>ref|XM_592847.2| PREDICTED: Bos taurus similar to kinesin family member 1C (LOC514928), mRNA Length = 3387 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggatcctgcaggaggtgaag 144 |||||||||||||||||||| Sbjct: 2663 ggatcctgcaggaggtgaag 2682
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 atcctgcaggaggtgaagga 146 |||||||||||||||||||| Sbjct: 3674072 atcctgcaggaggtgaagga 3674091
>gb|BC029286.1| Mus musculus kinesin family member 1C, mRNA (cDNA clone IMAGE:4951806) Length = 3168 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggatcctgcaggaggtgaag 144 |||||||||||||||||||| Sbjct: 2879 ggatcctgcaggaggtgaag 2898
>gb|BC006188.1| Mus musculus kinesin family member 1C, mRNA (cDNA clone IMAGE:3601539) Length = 1129 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggatcctgcaggaggtgaag 144 |||||||||||||||||||| Sbjct: 840 ggatcctgcaggaggtgaag 859
>gb|AE016828.2| Coxiella burnetii RSA 493, complete genome Length = 1995281 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 atcctgcaggaggtgaagga 146 |||||||||||||||||||| Sbjct: 1415685 atcctgcaggaggtgaagga 1415666
>emb|AL596117.19| Mouse DNA sequence from clone RP23-326P7 on chromosome 11 Contains the Gp1ba gene for glycoprotein 1b alpha polypeptide, the Slc25a11 gene for solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier) member 11, the gene for a novel PA domain and C3HC4 type zinc finger (RING finger) containing protein, the Pfn1 gene for profilin 1, five novel genes, the Eno3 gene for muscle enolase 3 beta, the Spag7 gene for sperm associated antigen 7, the Kif1c gene for kinesin family member 1C, a ribosomal protein 37A (Rpl37a) pseudogene, the gene for a novel zinc finger protein and six CpG islands, complete sequence Length = 207086 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggatcctgcaggaggtgaag 144 |||||||||||||||||||| Sbjct: 93763 ggatcctgcaggaggtgaag 93782
>emb|AL590448.1|CNS07EGF chromosome VIII of strain GB-M1 of Encephalitozoon cuniculi (Microspora) Length = 238147 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 tcctgcaggaggtgaaggag 147 |||||||||||||||||||| Sbjct: 89825 tcctgcaggaggtgaaggag 89806
>emb|CR933735.5| Mouse DNA sequence from clone DN-199E5 on chromosome 11, complete sequence Length = 188880 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggatcctgcaggaggtgaag 144 |||||||||||||||||||| Sbjct: 57092 ggatcctgcaggaggtgaag 57111
>gb|AC110002.2| Homo sapiens chromosome 5 clone RP11-125A13, complete sequence Length = 168708 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 132 gcaggaggtgaaggagatgcagtc 155 ||||||||||||||||| |||||| Sbjct: 48141 gcaggaggtgaaggagaagcagtc 48118
>gb|AC008547.6| Homo sapiens chromosome 5 clone CTC-502M5, complete sequence Length = 114005 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 132 gcaggaggtgaaggagatgcagtc 155 ||||||||||||||||| |||||| Sbjct: 75064 gcaggaggtgaaggagaagcagtc 75087
>dbj|AK046574.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length enriched library, clone:B430105J22 product:KINESIN SUPERFAMILY PROTEIN 1C homolog [Mus musculus], full insert sequence Length = 4422 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggatcctgcaggaggtgaag 144 |||||||||||||||||||| Sbjct: 2133 ggatcctgcaggaggtgaag 2152
>ref|NM_153103.1| Mus musculus kinesin family member 1C (Kif1c), mRNA Length = 3303 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggatcctgcaggaggtgaag 144 |||||||||||||||||||| Sbjct: 2522 ggatcctgcaggaggtgaag 2541
>gb|AC147103.3| Pan troglodytes BAC clone RP43-31L11 from chromosome 7, complete sequence Length = 222089 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 tcctgcaggaggtgaaggag 147 |||||||||||||||||||| Sbjct: 213434 tcctgcaggaggtgaaggag 213415
>dbj|AK173007.1| Mus musculus mRNA for mKIAA0706 protein Length = 4962 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggatcctgcaggaggtgaag 144 |||||||||||||||||||| Sbjct: 2635 ggatcctgcaggaggtgaag 2654
>gb|AC170740.3| Sorex araneus clone SA_Ba-535D8, complete sequence Length = 121913 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 aggaggtgaaggagatgcag 153 |||||||||||||||||||| Sbjct: 24404 aggaggtgaaggagatgcag 24423
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 111 cccggcggtgaagcggatcctgca 134 |||||||||| ||||||||||||| Sbjct: 918578 cccggcggtggagcggatcctgca 918601
>dbj|AB074017.1| Mus musculus kif1C mRNA for kinesin superfamily protein 1C, complete cds Length = 3303 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 125 ggatcctgcaggaggtgaag 144 |||||||||||||||||||| Sbjct: 2522 ggatcctgcaggaggtgaag 2541 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,929,636 Number of Sequences: 3902068 Number of extensions: 1929636 Number of successful extensions: 39202 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 39067 Number of HSP's gapped (non-prelim): 135 length of query: 290 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 268 effective length of database: 17,147,199,772 effective search space: 4595449538896 effective search space used: 4595449538896 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)