ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet58d09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 60 2e-06
2dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic D... 60 2e-06
3emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chro... 50 0.002
4emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4,... 40 1.6
5gb|AY895166.1| Gallus gallus BAC bW108010 chemokine-like ligand ... 40 1.6
6gb|AC006946.20| Homo sapiens Chromosome 22q11 Pac Clone p109l3 i... 40 1.6
7dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.6
8gb|AC140263.3| Mus musculus BAC clone RP24-299F13 from chromosom... 40 1.6
9emb|AJ514427.1|ECA514427 Equus caballus mRNA for aquaporin 5 (aq... 40 1.6
10gb|AY610211.1| Sus scrofa clone Clu_9762.scr.msk.p1.Contig1, mRN... 40 1.6
11ref|XM_518941.1| PREDICTED: Pan troglodytes similar to KIAA1950 ... 38 6.4
12gb|DQ224364.1| Crocus vernus 18S ribosomal RNA gene, partial seq... 38 6.4
13gb|DQ224363.1| Crocus vernus 18S ribosomal RNA gene, partial seq... 38 6.4
14ref|XM_424642.1| PREDICTED: Gallus gallus similar to Protocadher... 38 6.4
15ref|XM_428857.1| PREDICTED: Gallus gallus similar to Protocadher... 38 6.4
16ref|XM_424315.1| PREDICTED: Gallus gallus similar to Protocadher... 38 6.4
17ref|XM_424332.1| PREDICTED: Gallus gallus similar to Protocadher... 38 6.4
18ref|XM_423902.1| PREDICTED: Gallus gallus similar to Protocadher... 38 6.4
19ref|XM_423725.1| PREDICTED: Gallus gallus similar to Protocadher... 38 6.4
20ref|XM_427149.1| PREDICTED: Gallus gallus similar to Protocadher... 38 6.4
21ref|XM_423165.1| PREDICTED: Gallus gallus similar to Protocadher... 38 6.4
22ref|XM_427107.1| PREDICTED: Gallus gallus similar to Protocadher... 38 6.4
23ref|XM_423014.1| PREDICTED: Gallus gallus similar to Protocadher... 38 6.4
24gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 38 6.4
25ref|XM_323802.1| Neurospora crassa OR74A hypothetical protein (N... 38 6.4
26ref|XM_950815.1| Neurospora crassa OR74A hypothetical protein (N... 38 6.4
27ref|XM_959560.1| Neurospora crassa OR74A related to n-alkane-ind... 38 6.4
28ref|XM_329220.1| Neurospora crassa OR74A related to n-alkane-ind... 38 6.4
29gb|AC006028.3| Homo sapiens BAC clone GS1-165O14 from 7, complet... 38 6.4
30ref|XM_975741.1| PREDICTED: Mus musculus hypothetical protein LO... 38 6.4
31emb|AJ635357.1| Homo sapiens mRNA for metalloproteinase-like pro... 38 6.4
32gb|AC183798.2| Pan troglodytes BAC clone CH251-424F21 from chrom... 38 6.4
33emb|BX908808.1| Neurospora crassa DNA linkage group IV Cosmid co... 38 6.4
34emb|AL442164.1|NCB2J23 Neurospora crassa DNA linkage group I BAC... 38 6.4
35dbj|AK092107.1| Homo sapiens cDNA FLJ34788 fis, clone NT2NE2004787 38 6.4
36gb|AC010198.8| Homo sapiens 12p11-37.2-54.4 BAC RP11-77I22 (Rosw... 38 6.4
37ref|NM_133463.1| Homo sapiens archaemetzincin-1 (AMZ1), mRNA 38 6.4
38gb|AC151895.4| Mus musculus BAC clone RP24-323A22 from chromosom... 38 6.4
39gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 38 6.4
40gb|AC123530.4| Mus musculus BAC clone RP24-194D2 from chromosome... 38 6.4
41gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 38 6.4
42gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 38 6.4
43gb|AE005111.1| Halobacterium sp. NRC-1 section 142 of 170 of the... 38 6.4
44gb|AC147872.3| Monodelphis domestica clone VMRC6-555H19, complet... 38 6.4
45emb|Z56184.1|HS92F9F H.sapiens CpG island DNA genomic Mse1 fragm... 38 6.4
46gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold 38 6.4
47emb|AL611963.24| Mouse DNA sequence from clone RP23-79J18 on chr... 38 6.4
48dbj|AB075830.1| Homo sapiens mRNA for KIAA1950 protein 38 6.4 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                            
Query: 38       aaatggcgctcctcccgctgctcctcgcggccctcatcgtctcctgctccgctcagcagc 97
                |||||||||||||||||||| ||||||||  |||| ||| ||||  | |||| |||||||
Sbjct: 26355420 aaatggcgctcctcccgctggtcctcgcgctcctcgtcgcctccgccgccgcgcagcagc 26355479

                      
Query: 98       caccga 103
                ||||||
Sbjct: 26355480 caccga 26355485
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>dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:P0491E01
          Length = 136150

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                         
Query: 38    aaatggcgctcctcccgctgctcctcgcggccctcatcgtctcctgctccgctcagcagc 97
             |||||||||||||||||||| ||||||||  |||| ||| ||||  | |||| |||||||
Sbjct: 87772 aaatggcgctcctcccgctggtcctcgcgctcctcgtcgcctccgccgccgcgcagcagc 87831

                   
Query: 98    caccga 103
             ||||||
Sbjct: 87832 caccga 87837
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>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2
          Length = 339972

 Score = 50.1 bits (25), Expect = 0.002
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 38    aaatggcgctcctcccgctgctcctcgcg 66
             |||||||||||||||||||| ||||||||
Sbjct: 78564 aaatggcgctcctcccgctggtcctcgcg 78592
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>emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055C08,
              complete sequence
          Length = 145670

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     ctcctcccgctgctcctcgc 65
              ||||||||||||||||||||
Sbjct: 106847 ctcctcccgctgctcctcgc 106828
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>gb|AY895166.1| Gallus gallus BAC bW108010 chemokine-like ligand 1, SCYA4, chemokine
             K203, and chemokine ah294 genes, complete cds
          Length = 112034

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 48    cctcccgctgctcctcgcggccct 71
             |||||||||||||||||| |||||
Sbjct: 61861 cctcccgctgctcctcgcagccct 61838
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>gb|AC006946.20| Homo sapiens Chromosome 22q11 Pac Clone p109l3 in CES region, complete
              sequence
          Length = 193159

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 43     gcgctcctcccgctgctcct 62
              ||||||||||||||||||||
Sbjct: 104289 gcgctcctcccgctgctcct 104270
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 46       ctcctcccgctgctcctcgc 65
                ||||||||||||||||||||
Sbjct: 19325015 ctcctcccgctgctcctcgc 19324996
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>gb|AC140263.3| Mus musculus BAC clone RP24-299F13 from chromosome 17, complete sequence
          Length = 158695

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 90     tcagcagccaccgatgcacc 109
              ||||||||||||||||||||
Sbjct: 116705 tcagcagccaccgatgcacc 116686
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>emb|AJ514427.1|ECA514427 Equus caballus mRNA for aquaporin 5 (aqp5 gene)
          Length = 727

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 44  cgctcctcccgctgctcctc 63
           ||||||||||||||||||||
Sbjct: 219 cgctcctcccgctgctcctc 200
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>gb|AY610211.1| Sus scrofa clone Clu_9762.scr.msk.p1.Contig1, mRNA sequence
          Length = 2291

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 44   cgctcctcccgctgctcctc 63
            ||||||||||||||||||||
Sbjct: 2038 cgctcctcccgctgctcctc 2057
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>ref|XM_518941.1| PREDICTED: Pan troglodytes similar to KIAA1950 protein (LOC463233),
            mRNA
          Length = 3125

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 52   ccgctgctcctcgcggccc 70
            |||||||||||||||||||
Sbjct: 1607 ccgctgctcctcgcggccc 1625
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>gb|DQ224364.1| Crocus vernus 18S ribosomal RNA gene, partial sequence; internal
           transcribed spacer 1, 5.8S ribosomal RNA gene, and
           internal transcribed spacer 2, complete sequence; and
           26S ribosomal RNA gene, partial sequence
          Length = 695

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 50  tcccgctgctcctcgcggc 68
           |||||||||||||||||||
Sbjct: 87  tcccgctgctcctcgcggc 105
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>gb|DQ224363.1| Crocus vernus 18S ribosomal RNA gene, partial sequence; and
           internal transcribed spacer 1, 5.8S ribosomal RNA gene,
           internal transcribed spacer 2, and 26S ribosomal RNA
           gene, complete sequence
          Length = 694

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 50  tcccgctgctcctcgcggc 68
           |||||||||||||||||||
Sbjct: 87  tcccgctgctcctcgcggc 105
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>ref|XM_424642.1| PREDICTED: Gallus gallus similar to Protocadherin beta 1 precursor
           (PCDH-beta1) (LOC427044), partial mRNA
          Length = 1152

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 49  ctcccgctgctcctcgcgg 67
           |||||||||||||||||||
Sbjct: 663 ctcccgctgctcctcgcgg 645
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>ref|XM_428857.1| PREDICTED: Gallus gallus similar to Protocadherin beta 15 precursor
           (LOC431306), partial mRNA
          Length = 1452

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 49  ctcccgctgctcctcgcgg 67
           |||||||||||||||||||
Sbjct: 648 ctcccgctgctcctcgcgg 630
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>ref|XM_424315.1| PREDICTED: Gallus gallus similar to Protocadherin beta 1 precursor
           (PCDH-beta1) (LOC426692), partial mRNA
          Length = 1455

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 49  ctcccgctgctcctcgcgg 67
           |||||||||||||||||||
Sbjct: 966 ctcccgctgctcctcgcgg 948
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>ref|XM_424332.1| PREDICTED: Gallus gallus similar to Protocadherin beta 15 precursor
            (PCDH-beta15) (LOC426713), mRNA
          Length = 1848

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 49   ctcccgctgctcctcgcgg 67
            |||||||||||||||||||
Sbjct: 1038 ctcccgctgctcctcgcgg 1020
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>ref|XM_423902.1| PREDICTED: Gallus gallus similar to Protocadherin beta 1 precursor
           (PCDH-beta1) (LOC426239), partial mRNA
          Length = 1344

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 49  ctcccgctgctcctcgcgg 67
           |||||||||||||||||||
Sbjct: 804 ctcccgctgctcctcgcgg 786
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>ref|XM_423725.1| PREDICTED: Gallus gallus similar to Protocadherin beta 15 precursor
           (PCDH-beta15) (LOC426046), mRNA
          Length = 1687

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 49  ctcccgctgctcctcgcgg 67
           |||||||||||||||||||
Sbjct: 876 ctcccgctgctcctcgcgg 858
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>ref|XM_427149.1| PREDICTED: Gallus gallus similar to Protocadherin beta 15 precursor
           (PCDH-beta15) (LOC429594), partial mRNA
          Length = 764

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 49  ctcccgctgctcctcgcgg 67
           |||||||||||||||||||
Sbjct: 379 ctcccgctgctcctcgcgg 361
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>ref|XM_423165.1| PREDICTED: Gallus gallus similar to Protocadherin beta 15 precursor
           (LOC425401), mRNA
          Length = 2341

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 49  ctcccgctgctcctcgcgg 67
           |||||||||||||||||||
Sbjct: 778 ctcccgctgctcctcgcgg 760
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>ref|XM_427107.1| PREDICTED: Gallus gallus similar to Protocadherin beta 1 precursor
           (PCDH-beta1) (LOC429549), partial mRNA
          Length = 1246

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 49  ctcccgctgctcctcgcgg 67
           |||||||||||||||||||
Sbjct: 648 ctcccgctgctcctcgcgg 630
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>ref|XM_423014.1| PREDICTED: Gallus gallus similar to Protocadherin beta 15 precursor
           (PCDH-beta15) (LOC425230), partial mRNA
          Length = 2013

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 49  ctcccgctgctcctcgcgg 67
           |||||||||||||||||||
Sbjct: 813 ctcccgctgctcctcgcgg 795
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 42     ggcgctcctcccgctgctcctcgcggc 68
              ||||| ||| |||||||||||||||||
Sbjct: 102790 ggcgcccctgccgctgctcctcgcggc 102764
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>ref|XM_323802.1| Neurospora crassa OR74A hypothetical protein (NCU04450.1) partial
            mRNA
          Length = 1974

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 69   cctcatcgtctcctgctcc 87
            |||||||||||||||||||
Sbjct: 1914 cctcatcgtctcctgctcc 1896
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>ref|XM_950815.1| Neurospora crassa OR74A hypothetical protein (NCU04450.1) partial
            mRNA
          Length = 1974

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 69   cctcatcgtctcctgctcc 87
            |||||||||||||||||||
Sbjct: 1914 cctcatcgtctcctgctcc 1896
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>ref|XM_959560.1| Neurospora crassa OR74A related to n-alkane-inducible cytochrome P450
            [MIPS] (NCU02031.1) partial mRNA
          Length = 1488

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 5    ctccagagcgccgatcaag 23
            |||||||||||||||||||
Sbjct: 1089 ctccagagcgccgatcaag 1107
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>ref|XM_329220.1| Neurospora crassa OR74A related to n-alkane-inducible cytochrome P450
            [MIPS] (NCU02031.1) partial mRNA
          Length = 1488

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 5    ctccagagcgccgatcaag 23
            |||||||||||||||||||
Sbjct: 1089 ctccagagcgccgatcaag 1107
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>gb|AC006028.3| Homo sapiens BAC clone GS1-165O14 from 7, complete sequence
          Length = 210608

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 52     ccgctgctcctcgcggccc 70
              |||||||||||||||||||
Sbjct: 158549 ccgctgctcctcgcggccc 158531
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>ref|XM_975741.1| PREDICTED: Mus musculus hypothetical protein LOC665266 (LOC665266),
           mRNA
          Length = 423

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 45  gctcctcccgctgctcctc 63
           |||||||||||||||||||
Sbjct: 148 gctcctcccgctgctcctc 130
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>emb|AJ635357.1| Homo sapiens mRNA for metalloproteinase-like protein (AMZ1 gene)
          Length = 1497

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 52  ccgctgctcctcgcggccc 70
           |||||||||||||||||||
Sbjct: 420 ccgctgctcctcgcggccc 438
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>gb|AC183798.2| Pan troglodytes BAC clone CH251-424F21 from chromosome 7, complete
              sequence
          Length = 153775

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 52     ccgctgctcctcgcggccc 70
              |||||||||||||||||||
Sbjct: 120421 ccgctgctcctcgcggccc 120439
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>emb|BX908808.1| Neurospora crassa DNA linkage group IV Cosmid contig G21B4
          Length = 177225

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 69    cctcatcgtctcctgctcc 87
             |||||||||||||||||||
Sbjct: 39965 cctcatcgtctcctgctcc 39947
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>emb|AL442164.1|NCB2J23 Neurospora crassa DNA linkage group I BAC clone B2J23
          Length = 65725

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 5     ctccagagcgccgatcaag 23
             |||||||||||||||||||
Sbjct: 27438 ctccagagcgccgatcaag 27420
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>dbj|AK092107.1| Homo sapiens cDNA FLJ34788 fis, clone NT2NE2004787
          Length = 1862

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 52  ccgctgctcctcgcggccc 70
           |||||||||||||||||||
Sbjct: 733 ccgctgctcctcgcggccc 751
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>gb|AC010198.8| Homo sapiens 12p11-37.2-54.4 BAC RP11-77I22 (Roswell Park Cancer
             Institute Human BAC Library) complete sequence
          Length = 199070

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 43    gcgctcctcccgctgctcc 61
             |||||||||||||||||||
Sbjct: 98825 gcgctcctcccgctgctcc 98807
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>ref|NM_133463.1| Homo sapiens archaemetzincin-1 (AMZ1), mRNA
          Length = 4415

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 52  ccgctgctcctcgcggccc 70
           |||||||||||||||||||
Sbjct: 781 ccgctgctcctcgcggccc 799
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>gb|AC151895.4| Mus musculus BAC clone RP24-323A22 from chromosome 10, complete
             sequence
          Length = 224442

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 18    atcaagagtcaccagactg 36
             |||||||||||||||||||
Sbjct: 29555 atcaagagtcaccagactg 29573
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>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII,
              complete sequence
          Length = 1476513

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 43     gcgctcctcccgctgctcc 61
              |||||||||||||||||||
Sbjct: 309943 gcgctcctcccgctgctcc 309925
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>gb|AC123530.4| Mus musculus BAC clone RP24-194D2 from chromosome 10, complete sequence
          Length = 164420

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 18     atcaagagtcaccagactg 36
              |||||||||||||||||||
Sbjct: 107074 atcaagagtcaccagactg 107092
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 47      tcctcccgctgctcctcgc 65
               |||||||||||||||||||
Sbjct: 3061508 tcctcccgctgctcctcgc 3061526
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>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 117     acccaacgcgccgcctgcc 135
               |||||||||||||||||||
Sbjct: 2229144 acccaacgcgccgcctgcc 2229126
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>gb|AE005111.1| Halobacterium sp. NRC-1 section 142 of 170 of the complete genome
          Length = 11925

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 41  tggcgctcctcccgctgctcctc 63
           |||||||| ||||||||||||||
Sbjct: 644 tggcgctcgtcccgctgctcctc 622
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>gb|AC147872.3| Monodelphis domestica clone VMRC6-555H19, complete sequence
          Length = 139145

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 25    gtcaccagactgaaaatgg 43
             |||||||||||||||||||
Sbjct: 64049 gtcaccagactgaaaatgg 64067
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>emb|Z56184.1|HS92F9F H.sapiens CpG island DNA genomic Mse1 fragment, clone 92f9,
          forward read cpg92f9.ft1a
          Length = 248

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 43 gcgctcctcccgctgctcc 61
          |||||||||||||||||||
Sbjct: 99 gcgctcctcccgctgctcc 81
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>gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold
          Length = 1833844

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 25      gtcaccagactgaaaatgg 43
               |||||||||||||||||||
Sbjct: 1700376 gtcaccagactgaaaatgg 1700394
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>emb|AL611963.24| Mouse DNA sequence from clone RP23-79J18 on chromosome 4, complete
              sequence
          Length = 222196

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 45     gctcctcccgctgctcctc 63
              |||||||||||||||||||
Sbjct: 153940 gctcctcccgctgctcctc 153922
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>dbj|AB075830.1| Homo sapiens mRNA for KIAA1950 protein
          Length = 4415

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 52  ccgctgctcctcgcggccc 70
           |||||||||||||||||||
Sbjct: 781 ccgctgctcctcgcggccc 799


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 796,807
Number of Sequences: 3902068
Number of extensions: 796807
Number of successful extensions: 57737
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57356
Number of HSP's gapped (non-prelim): 381
length of query: 135
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 114
effective length of database: 17,151,101,840
effective search space: 1955225609760
effective search space used: 1955225609760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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