ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet58d07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK119933.1| Oryza sativa (japonica cultivar-group) cDNA clon... 470 e-129
2emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in ... 46 0.051
3ref|NM_166068.1| Drosophila melanogaster CG10151-RB, transcript ... 44 0.20
4ref|NM_166067.1| Drosophila melanogaster CG10151-RA, transcript ... 44 0.20
5ref|NM_137140.2| Drosophila melanogaster CG10151-RC, transcript ... 44 0.20
6gb|AC007580.6| Drosophila melanogaster, chromosome 2R, region 50... 44 0.20
7gb|AY047541.1| Drosophila melanogaster GH05433 full length cDNA 44 0.20
8gb|AC010578.5|AC010578 Drosophila melanogaster, chromosome 2R, r... 44 0.20
9gb|AE003813.3| Drosophila melanogaster chromosome 2R, section 37... 44 0.20
10gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 44 0.20
11gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete s... 42 0.79
12dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.79
13dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.79
14gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 3.1
15ref|XM_543034.2| PREDICTED: Canis familiaris similar to Solute c... 40 3.1
16gb|AC117428.3| Homo sapiens 3 BAC RP11-66P11 (Roswell Park Cance... 40 3.1
17gb|AC055710.10| Homo sapiens 3 BAC RP11-307E22 (Roswell Park Can... 40 3.1
18gb|AF441442.1|AF441442 Serratia marcescens apoquinoprotein gluco... 40 3.1
19dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
20dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 3.1
21dbj|AP006176.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
22dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
23gb|AC003991.1|AC003991 Human BAC clone CTB-167B5 from 7q21, comp... 40 3.1
24gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, ... 40 3.1

>dbj|AK119933.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-A09, full
           insert sequence
          Length = 1094

 Score =  470 bits (237), Expect = e-129
 Identities = 240/241 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   tgcatgcaaacaaatcactagcgagccgcatacatcacatcacaaacgaagcgcggcacg 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2   tgcatgcaaacaaatcactagcgagccgcatacatcacatcacaaacgaagcgcggcacg 61

                                                                       
Query: 62  caatggcgccctcctcgtcgtctccactgccggcgtctccgctgctcgtgctgctgatgg 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62  caatggcgccctcctcgtcgtctccactgccggcgtctccgctgctcgtgctgctgatgg 121

                                                                       
Query: 122 tgccgctcctgctcgccatggctcgtccgtgctccggcgtggacgccatcggcacctact 181
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 122 tgccgctcctgctcgccatggcgcgtccgtgctccggcgtggacgccatcggcacctact 181

                                                                       
Query: 182 gcgctaagaacggcaccagcgcggagacgcaggccagcatcgaccaggtcctcgcggcgc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 gcgctaagaacggcaccagcgcggagacgcaggccagcatcgaccaggtcctcgcggcgc 241

            
Query: 242 t 242
           |
Sbjct: 242 t 242



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>emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in linkage group 25,
             complete sequence
          Length = 169168

 Score = 46.1 bits (23), Expect = 0.051
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 112   ctgctgatggtgccgctcctgctcgcc 138
             ||||||||||||||||| |||||||||
Sbjct: 64654 ctgctgatggtgccgctgctgctcgcc 64628



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>ref|NM_166068.1| Drosophila melanogaster CG10151-RB, transcript variant B (CG10151),
            mRNA
          Length = 2463

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 109  gtgctgctgatggtgccgctcctgct 134
            |||||||||||||||| |||||||||
Sbjct: 1866 gtgctgctgatggtgctgctcctgct 1841



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>ref|NM_166067.1| Drosophila melanogaster CG10151-RA, transcript variant A (CG10151),
            mRNA
          Length = 2212

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 109  gtgctgctgatggtgccgctcctgct 134
            |||||||||||||||| |||||||||
Sbjct: 1615 gtgctgctgatggtgctgctcctgct 1590



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>ref|NM_137140.2| Drosophila melanogaster CG10151-RC, transcript variant C (CG10151),
            mRNA
          Length = 2766

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 109  gtgctgctgatggtgccgctcctgct 134
            |||||||||||||||| |||||||||
Sbjct: 2169 gtgctgctgatggtgctgctcctgct 2144



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>gb|AC007580.6| Drosophila melanogaster, chromosome 2R, region 50F-51C, BAC clone
              BACR07P02, complete sequence
          Length = 160920

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 109    gtgctgctgatggtgccgctcctgct 134
              |||||||||||||||| |||||||||
Sbjct: 152966 gtgctgctgatggtgctgctcctgct 152991



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>gb|AY047541.1| Drosophila melanogaster GH05433 full length cDNA
          Length = 2337

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 109  gtgctgctgatggtgccgctcctgct 134
            |||||||||||||||| |||||||||
Sbjct: 1626 gtgctgctgatggtgctgctcctgct 1601



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>gb|AC010578.5|AC010578 Drosophila melanogaster, chromosome 2R, region 51B-51C, BAC clone
             BACR03K23, complete sequence
          Length = 160346

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 109   gtgctgctgatggtgccgctcctgct 134
             |||||||||||||||| |||||||||
Sbjct: 30635 gtgctgctgatggtgctgctcctgct 30660



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>gb|AE003813.3| Drosophila melanogaster chromosome 2R, section 37 of 73 of the complete
              sequence
          Length = 266851

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 109    gtgctgctgatggtgccgctcctgct 134
              |||||||||||||||| |||||||||
Sbjct: 122978 gtgctgctgatggtgctgctcctgct 123003



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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 46      aacgaagcgcggcacgcaatggcgcc 71
               ||||||||||| ||||||||||||||
Sbjct: 2717742 aacgaagcgcgacacgcaatggcgcc 2717717



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>gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete sequence
          Length = 634917

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 210    gcaggccagcatcgaccaggtcctc 234
              ||||||||||||||||||| |||||
Sbjct: 601378 gcaggccagcatcgaccagatcctc 601402



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 77       cgtcgtctccactgccggcgt 97
                |||||||||||||||||||||
Sbjct: 29537375 cgtcgtctccactgccggcgt 29537355



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>dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0655A07
          Length = 172473

 Score = 42.1 bits (21), Expect = 0.79
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 77     cgtcgtctccactgccggcgt 97
              |||||||||||||||||||||
Sbjct: 101881 cgtcgtctccactgccggcgt 101861



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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 100    ccgctgctcgtgctgctgat 119
              ||||||||||||||||||||
Sbjct: 167055 ccgctgctcgtgctgctgat 167036



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>ref|XM_543034.2| PREDICTED: Canis familiaris similar to Solute carrier family 13,
           member 3 (Sodium-dependent high-affinity dicarboxylate
           transporter 2) (Na(+)/dicarboxylate cotransporter 3)
           (NaDC-3) (hNaDC3) (LOC485910), mRNA
          Length = 1806

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 102 gctgctcgtgctgctgatggtgccgctc 129
           |||||||||||||||| ||| |||||||
Sbjct: 48  gctgctcgtgctgctgttggcgccgctc 75



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>gb|AC117428.3| Homo sapiens 3 BAC RP11-66P11 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 12446

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 2    tgcatgcaaacaaatcacta 21
            ||||||||||||||||||||
Sbjct: 1760 tgcatgcaaacaaatcacta 1779



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>gb|AC055710.10| Homo sapiens 3 BAC RP11-307E22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 169964

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 2      tgcatgcaaacaaatcacta 21
              ||||||||||||||||||||
Sbjct: 169725 tgcatgcaaacaaatcacta 169744



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>gb|AF441442.1|AF441442 Serratia marcescens apoquinoprotein glucose dehydrogenase (GCD) gene,
            complete sequence; and unknown genes
          Length = 7718

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 109  gtgctgctgatggtgccgct 128
            ||||||||||||||||||||
Sbjct: 5917 gtgctgctgatggtgccgct 5936



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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 80      cgtctccactgccggcgtctccgctgct 107
               |||| |||| ||||||||||||||||||
Sbjct: 4561958 cgtcgccaccgccggcgtctccgctgct 4561985



 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 80      cgtctccactgccggcgtctccgctgct 107
               |||| |||| ||||||||||||||||||
Sbjct: 4551967 cgtcgccaccgccggcgtctccgctgct 4551994



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 144     tcgtccgtgctccggcgtgg 163
               ||||||||||||||||||||
Sbjct: 1367949 tcgtccgtgctccggcgtgg 1367968



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>dbj|AP006176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0681H07
          Length = 144722

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 80    cgtctccactgccggcgtctccgctgct 107
             |||| |||| ||||||||||||||||||
Sbjct: 14827 cgtcgccaccgccggcgtctccgctgct 14854



 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 80   cgtctccactgccggcgtctccgctgct 107
            |||| |||| ||||||||||||||||||
Sbjct: 4836 cgtcgccaccgccggcgtctccgctgct 4863



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>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0638A12
          Length = 140731

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 80     cgtctccactgccggcgtctccgctgct 107
              |||| |||| ||||||||||||||||||
Sbjct: 105332 cgtcgccaccgccggcgtctccgctgct 105359



 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 80    cgtctccactgccggcgtctccgctgct 107
             |||| |||| ||||||||||||||||||
Sbjct: 95341 cgtcgccaccgccggcgtctccgctgct 95368



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>gb|AC003991.1|AC003991 Human BAC clone CTB-167B5 from 7q21, complete sequence
          Length = 118313

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   gtgctgctgatggtgccgct 128
             ||||||||||||||||||||
Sbjct: 94972 gtgctgctgatggtgccgct 94991



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>gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, complete cds;
             chivosazol biosynthetic gene cluster, complete sequence;
             and hypothetical protein gene, complete cds
          Length = 96547

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    ctgccggcgtctccgctgct 107
             ||||||||||||||||||||
Sbjct: 21719 ctgccggcgtctccgctgct 21738


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,425,801
Number of Sequences: 3902068
Number of extensions: 1425801
Number of successful extensions: 31722
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 31483
Number of HSP's gapped (non-prelim): 239
length of query: 243
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 221
effective length of database: 17,147,199,772
effective search space: 3789531149612
effective search space used: 3789531149612
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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