| Clone Name | baet58d07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK119933.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-184-A09, full insert sequence Length = 1094 Score = 470 bits (237), Expect = e-129 Identities = 240/241 (99%) Strand = Plus / Plus Query: 2 tgcatgcaaacaaatcactagcgagccgcatacatcacatcacaaacgaagcgcggcacg 61 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2 tgcatgcaaacaaatcactagcgagccgcatacatcacatcacaaacgaagcgcggcacg 61 Query: 62 caatggcgccctcctcgtcgtctccactgccggcgtctccgctgctcgtgctgctgatgg 121 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 62 caatggcgccctcctcgtcgtctccactgccggcgtctccgctgctcgtgctgctgatgg 121 Query: 122 tgccgctcctgctcgccatggctcgtccgtgctccggcgtggacgccatcggcacctact 181 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 122 tgccgctcctgctcgccatggcgcgtccgtgctccggcgtggacgccatcggcacctact 181 Query: 182 gcgctaagaacggcaccagcgcggagacgcaggccagcatcgaccaggtcctcgcggcgc 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 182 gcgctaagaacggcaccagcgcggagacgcaggccagcatcgaccaggtcctcgcggcgc 241 Query: 242 t 242 | Sbjct: 242 t 242
>emb|BX546502.7| Zebrafish DNA sequence from clone RP71-62P22 in linkage group 25, complete sequence Length = 169168 Score = 46.1 bits (23), Expect = 0.051 Identities = 26/27 (96%) Strand = Plus / Minus Query: 112 ctgctgatggtgccgctcctgctcgcc 138 ||||||||||||||||| ||||||||| Sbjct: 64654 ctgctgatggtgccgctgctgctcgcc 64628
>ref|NM_166068.1| Drosophila melanogaster CG10151-RB, transcript variant B (CG10151), mRNA Length = 2463 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Minus Query: 109 gtgctgctgatggtgccgctcctgct 134 |||||||||||||||| ||||||||| Sbjct: 1866 gtgctgctgatggtgctgctcctgct 1841
>ref|NM_166067.1| Drosophila melanogaster CG10151-RA, transcript variant A (CG10151), mRNA Length = 2212 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Minus Query: 109 gtgctgctgatggtgccgctcctgct 134 |||||||||||||||| ||||||||| Sbjct: 1615 gtgctgctgatggtgctgctcctgct 1590
>ref|NM_137140.2| Drosophila melanogaster CG10151-RC, transcript variant C (CG10151), mRNA Length = 2766 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Minus Query: 109 gtgctgctgatggtgccgctcctgct 134 |||||||||||||||| ||||||||| Sbjct: 2169 gtgctgctgatggtgctgctcctgct 2144
>gb|AC007580.6| Drosophila melanogaster, chromosome 2R, region 50F-51C, BAC clone BACR07P02, complete sequence Length = 160920 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Plus Query: 109 gtgctgctgatggtgccgctcctgct 134 |||||||||||||||| ||||||||| Sbjct: 152966 gtgctgctgatggtgctgctcctgct 152991
>gb|AY047541.1| Drosophila melanogaster GH05433 full length cDNA Length = 2337 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Minus Query: 109 gtgctgctgatggtgccgctcctgct 134 |||||||||||||||| ||||||||| Sbjct: 1626 gtgctgctgatggtgctgctcctgct 1601
>gb|AC010578.5|AC010578 Drosophila melanogaster, chromosome 2R, region 51B-51C, BAC clone BACR03K23, complete sequence Length = 160346 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Plus Query: 109 gtgctgctgatggtgccgctcctgct 134 |||||||||||||||| ||||||||| Sbjct: 30635 gtgctgctgatggtgctgctcctgct 30660
>gb|AE003813.3| Drosophila melanogaster chromosome 2R, section 37 of 73 of the complete sequence Length = 266851 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Plus Query: 109 gtgctgctgatggtgccgctcctgct 134 |||||||||||||||| ||||||||| Sbjct: 122978 gtgctgctgatggtgctgctcctgct 123003
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 44.1 bits (22), Expect = 0.20 Identities = 25/26 (96%) Strand = Plus / Minus Query: 46 aacgaagcgcggcacgcaatggcgcc 71 ||||||||||| |||||||||||||| Sbjct: 2717742 aacgaagcgcgacacgcaatggcgcc 2717717
>gb|CP000092.1| Ralstonia eutropha JMP134 megaplasmid, complete sequence Length = 634917 Score = 42.1 bits (21), Expect = 0.79 Identities = 24/25 (96%) Strand = Plus / Plus Query: 210 gcaggccagcatcgaccaggtcctc 234 ||||||||||||||||||| ||||| Sbjct: 601378 gcaggccagcatcgaccagatcctc 601402
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 0.79 Identities = 21/21 (100%) Strand = Plus / Minus Query: 77 cgtcgtctccactgccggcgt 97 ||||||||||||||||||||| Sbjct: 29537375 cgtcgtctccactgccggcgt 29537355
>dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0655A07 Length = 172473 Score = 42.1 bits (21), Expect = 0.79 Identities = 21/21 (100%) Strand = Plus / Minus Query: 77 cgtcgtctccactgccggcgt 97 ||||||||||||||||||||| Sbjct: 101881 cgtcgtctccactgccggcgt 101861
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 ccgctgctcgtgctgctgat 119 |||||||||||||||||||| Sbjct: 167055 ccgctgctcgtgctgctgat 167036
>ref|XM_543034.2| PREDICTED: Canis familiaris similar to Solute carrier family 13, member 3 (Sodium-dependent high-affinity dicarboxylate transporter 2) (Na(+)/dicarboxylate cotransporter 3) (NaDC-3) (hNaDC3) (LOC485910), mRNA Length = 1806 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 102 gctgctcgtgctgctgatggtgccgctc 129 |||||||||||||||| ||| ||||||| Sbjct: 48 gctgctcgtgctgctgttggcgccgctc 75
>gb|AC117428.3| Homo sapiens 3 BAC RP11-66P11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 12446 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 tgcatgcaaacaaatcacta 21 |||||||||||||||||||| Sbjct: 1760 tgcatgcaaacaaatcacta 1779
>gb|AC055710.10| Homo sapiens 3 BAC RP11-307E22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 169964 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 tgcatgcaaacaaatcacta 21 |||||||||||||||||||| Sbjct: 169725 tgcatgcaaacaaatcacta 169744
>gb|AF441442.1|AF441442 Serratia marcescens apoquinoprotein glucose dehydrogenase (GCD) gene, complete sequence; and unknown genes Length = 7718 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 gtgctgctgatggtgccgct 128 |||||||||||||||||||| Sbjct: 5917 gtgctgctgatggtgccgct 5936
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 80 cgtctccactgccggcgtctccgctgct 107 |||| |||| |||||||||||||||||| Sbjct: 4561958 cgtcgccaccgccggcgtctccgctgct 4561985 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 80 cgtctccactgccggcgtctccgctgct 107 |||| |||| |||||||||||||||||| Sbjct: 4551967 cgtcgccaccgccggcgtctccgctgct 4551994
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 tcgtccgtgctccggcgtgg 163 |||||||||||||||||||| Sbjct: 1367949 tcgtccgtgctccggcgtgg 1367968
>dbj|AP006176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0681H07 Length = 144722 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 80 cgtctccactgccggcgtctccgctgct 107 |||| |||| |||||||||||||||||| Sbjct: 14827 cgtcgccaccgccggcgtctccgctgct 14854 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 80 cgtctccactgccggcgtctccgctgct 107 |||| |||| |||||||||||||||||| Sbjct: 4836 cgtcgccaccgccggcgtctccgctgct 4863
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 80 cgtctccactgccggcgtctccgctgct 107 |||| |||| |||||||||||||||||| Sbjct: 105332 cgtcgccaccgccggcgtctccgctgct 105359 Score = 40.1 bits (20), Expect = 3.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 80 cgtctccactgccggcgtctccgctgct 107 |||| |||| |||||||||||||||||| Sbjct: 95341 cgtcgccaccgccggcgtctccgctgct 95368
>gb|AC003991.1|AC003991 Human BAC clone CTB-167B5 from 7q21, complete sequence Length = 118313 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 109 gtgctgctgatggtgccgct 128 |||||||||||||||||||| Sbjct: 94972 gtgctgctgatggtgccgct 94991
>gb|DQ065771.1| Polyangium cellulosum hypothetical protein gene, complete cds; chivosazol biosynthetic gene cluster, complete sequence; and hypothetical protein gene, complete cds Length = 96547 Score = 40.1 bits (20), Expect = 3.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 ctgccggcgtctccgctgct 107 |||||||||||||||||||| Sbjct: 21719 ctgccggcgtctccgctgct 21738 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,425,801 Number of Sequences: 3902068 Number of extensions: 1425801 Number of successful extensions: 31722 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31483 Number of HSP's gapped (non-prelim): 239 length of query: 243 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 221 effective length of database: 17,147,199,772 effective search space: 3789531149612 effective search space used: 3789531149612 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)