ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet58b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY112722.1| Bifidobacterium longum strain RW041 plasmid pNAC3... 42 0.72
2gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 0.72
3gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 2.8
4emb|CT009567.9| Mouse DNA sequence from clone RP23-50H13 on chro... 40 2.8
5emb|BX842577.1| Mycobacterium tuberculosis H37Rv complete genome... 40 2.8
6emb|BX248340.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 2.8
7gb|AC090610.6| Homo sapiens chromosome 17, clone RP11-493I24, co... 40 2.8
8gb|AC007087.7| Arabidopsis thaliana chromosome 2 clone F14N22 ma... 40 2.8
9gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 2.8

>gb|AY112722.1| Bifidobacterium longum strain RW041 plasmid pNAC3, complete sequence
          Length = 10224

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 154  ctcctcgcccgcgacccgcgccgcc 178
            |||||||||||||||| ||||||||
Sbjct: 6289 ctcctcgcccgcgaccagcgccgcc 6313



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 0.72
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 157     ctcgcccgcgacccgcgccgc 177
               |||||||||||||||||||||
Sbjct: 2542064 ctcgcccgcgacccgcgccgc 2542084



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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 73      aaccgccgcgtcgagcagcg 92
               ||||||||||||||||||||
Sbjct: 1920434 aaccgccgcgtcgagcagcg 1920453



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>emb|CT009567.9| Mouse DNA sequence from clone RP23-50H13 on chromosome 16, complete
             sequence
          Length = 213704

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   ccagcccgctccaacccttg 204
             ||||||||||||||||||||
Sbjct: 30580 ccagcccgctccaacccttg 30599



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>emb|BX842577.1| Mycobacterium tuberculosis H37Rv complete genome; segment 6/13
          Length = 347496

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     aaccgccgcgtcgagcagcg 92
              ||||||||||||||||||||
Sbjct: 198375 aaccgccgcgtcgagcagcg 198394



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>emb|BX248340.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
           7/14
          Length = 291050

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 73  aaccgccgcgtcgagcagcg 92
           ||||||||||||||||||||
Sbjct: 973 aaccgccgcgtcgagcagcg 992



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>gb|AC090610.6| Homo sapiens chromosome 17, clone RP11-493I24, complete sequence
          Length = 185980

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 156   cctcgcccgcgacccgcgccgccc 179
             ||||||||||| ||||||||||||
Sbjct: 63636 cctcgcccgcgccccgcgccgccc 63613



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>gb|AC007087.7| Arabidopsis thaliana chromosome 2 clone F14N22 map mi551, complete
             sequence
          Length = 96685

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    gccttgagagttgagagact 42
             ||||||||||||||||||||
Sbjct: 61661 gccttgagagttgagagact 61642



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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 156    cctcgcccgcgacccgcgcc 175
              ||||||||||||||||||||
Sbjct: 359127 cctcgcccgcgacccgcgcc 359108


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,186,918
Number of Sequences: 3902068
Number of extensions: 1186918
Number of successful extensions: 74243
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 73540
Number of HSP's gapped (non-prelim): 704
length of query: 223
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 201
effective length of database: 17,147,199,772
effective search space: 3446587154172
effective search space used: 3446587154172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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