Clone Information

BLAST Search Result

Clone Name	baet58a04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RSSA_SOYBN (O22518) 40S ribosomal protein SA (p40)	131	5e-31
2	RSSAB_ARATH (Q8H173) 40S ribosomal protein SA-2 (p40 protein hom...	118	4e-27
3	RSSA_CICAR (O65751) 40S ribosomal protein SA (p40)	116	2e-26
4	RSSAA_ARATH (Q08682) 40S ribosomal protein SA-1 (p40) (Laminin r...	115	2e-26
5	RSSA_DAUCA (O80377) 40S ribosomal protein SA (p40)	114	5e-26
6	RSSA_BRANA (Q9ZSR8) 40S ribosomal protein SA (p40) (Laminin rece...	112	2e-25
7	RSSA_DROME (P38979) 40S ribosomal protein SA (p40) (Stubarista p...	96	3e-20
8	RSSA_MOUSE (P14206) 40S ribosomal protein SA (p40) (34/67 kDa la...	94	6e-20
9	RSSA_RAT (P38983) 40S ribosomal protein SA (p40) (34/67 kDa lami...	94	1e-19
10	RSSA_HUMAN (P08865) 40S ribosomal protein SA (p40) (34/67 kDa la...	94	1e-19
11	RSSA_CRIGR (P38982) 40S ribosomal protein SA (p40) (34/67 kDa la...	94	1e-19
12	RSSA_BOVIN (P26452) 40S ribosomal protein SA (p40) (C10 protein)	94	1e-19
13	RSSA_CHICK (P50890) 40S ribosomal protein SA (p40) (34/67 kDa la...	94	1e-19
14	RS0B_SCHPO (Q9P546) 40S ribosomal protein S0-B	92	4e-19
15	RS0A_SCHPO (Q9Y7L8) 40S ribosomal protein S0-A	89	2e-18
16	RSSA_TRIGR (P38980) 40S ribosomal protein SA (p40) (34/67 kDa la...	88	5e-18
17	RS0_PNECA (Q01661) 40S ribosomal protein S0 (Extracellular matri...	88	6e-18
18	RSSA_URECA (P38981) 40S ribosomal protein SA (p40) (34/67 kDa la...	84	1e-16
19	RSSA_ECHGR (P46770) 40S ribosomal protein SA (p40) (Laminin-bind...	83	2e-16
20	RSSA_CHLVR (P38984) 40S ribosomal protein SA (p40) (33 kDa lamin...	82	3e-16
21	RSSA_CAEEL (P46769) Probable 40S ribosomal protein SA (p40)	81	7e-16
22	RS0_NEUCR (Q01291) 40S ribosomal protein S0 (Ribosome-associated...	77	1e-14
23	RS0B_YEAST (P46654) 40S ribosomal protein S0-B (Nucleic acid-bin...	76	2e-14
24	RS0A_YEAST (P32905) 40S ribosomal protein S0-A (Nucleic acid-bin...	76	2e-14
25	RS0_CANAL (O42817) 40S ribosomal protein S0	74	1e-13
26	RS2_METJA (P54109) 30S ribosomal protein S2P	50	1e-06
27	RS2_SULTO (Q96YW5) 30S ribosomal protein S2P	47	9e-06
28	RS2_SULAC (P39478) 30S ribosomal protein S2P	47	9e-06
29	RS2_SULSO (P95993) 30S ribosomal protein S2P	47	1e-05
30	RS2_PYRHO (O59295) 30S ribosomal protein S2P	46	3e-05
31	RS2_PYRFU (Q8U0F0) 30S ribosomal protein S2P	46	3e-05
32	RS2_METTH (O26150) 30S ribosomal protein S2P	45	6e-05
33	RS2_PYRAB (Q9V191) 30S ribosomal protein S2P	45	6e-05
34	RS2_METKA (Q8TV23) 30S ribosomal protein S2P	45	6e-05
35	RS2_PYRKO (Q5JJD2) 30S ribosomal protein S2P	45	6e-05
36	RS2_METMA (Q8PW41) 30S ribosomal protein S2P	45	6e-05
37	RS2_METAC (Q8TT39) 30S ribosomal protein S2P	44	1e-04
38	RS2_ARCFU (O29132) 30S ribosomal protein S2P	42	4e-04
39	RS2_HALMA (P29202) 30S ribosomal protein S2P (HS2) (ORFMSG)	42	4e-04
40	RS2_HALSA (P57713) 30S ribosomal protein S2P	41	6e-04
41	RS2_THEAC (P57712) 30S ribosomal protein S2P	40	0.001
42	RS2_THEVO (Q97BQ4) 30S ribosomal protein S2P	38	0.005
43	RS2_PICTO (Q6L1Q0) 30S ribosomal protein S2P	37	0.016
44	RS2_THETN (Q8RA21) 30S ribosomal protein S2	32	0.39
45	RS2_CHLPN (Q9Z7K9) 30S ribosomal protein S2	31	0.88
46	TMC2_HUMAN (Q8TDI7) Transmembrane cochlear-expressed protein 2	30	1.1
47	RT02_ARATH (Q9GCB9) Mitochondrial ribosomal protein S2	30	2.0
48	RS2_CHLCV (Q824U3) 30S ribosomal protein S2	29	3.3
49	RS2_ONYPE (Q6YR51) 30S ribosomal protein S2	28	4.3

>RSSA_SOYBN (O22518) 40S ribosomal protein SA (p40)|
          Length = 310

 Score =  131 bits (329), Expect = 5e-31
 Identities = 64/76 (84%), Positives = 67/76 (88%)
 Frame = +1

Query: 106 TMAAAAGEAPRALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTW 285
           T   AA   PR LSQKE D+QMMLAADVHLGTKNCDFQMERY +KRR+DGIYIINLGKTW
Sbjct: 3   TATNAAAAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTW 62

Query: 286 EKLQLAARVIVAIENP 333
           EKLQLAARVIVAIENP
Sbjct: 63  EKLQLAARVIVAIENP 78

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>RSSAB_ARATH (Q8H173) 40S ribosomal protein SA-2 (p40 protein homolog)|
          Length = 280

 Score =  118 bits (295), Expect = 4e-27
 Identities = 55/74 (74%), Positives = 64/74 (86%)
 Frame = +1

Query: 112 AAAAGEAPRALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEK 291
           A     A R +S+KE D+QMML+ADVHLGTKNC++QMERY +KRR DGIYIINLGKTW+K
Sbjct: 3   ANGVATAGRQVSEKEADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDK 62

Query: 292 LQLAARVIVAIENP 333
           LQ+AARVIVAIENP
Sbjct: 63  LQMAARVIVAIENP 76

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>RSSA_CICAR (O65751) 40S ribosomal protein SA (p40)|
          Length = 300

 Score =  116 bits (290), Expect = 2e-26
 Identities = 54/65 (83%), Positives = 61/65 (93%)
 Frame = +1

Query: 136 RALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVI 315
           R L+QKE D+QMMLAADVHLGTKNC+FQMERY +KRR+DGIYIINLGKTW+KL LAAR+I
Sbjct: 9   RQLTQKEADIQMMLAADVHLGTKNCNFQMERYIFKRRNDGIYIINLGKTWDKLNLAARII 68

Query: 316 VAIEN 330
           VAIEN
Sbjct: 69  VAIEN 73

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>RSSAA_ARATH (Q08682) 40S ribosomal protein SA-1 (p40) (Laminin receptor|
           homolog)
          Length = 298

 Score =  115 bits (289), Expect = 2e-26
 Identities = 55/75 (73%), Positives = 63/75 (84%)
 Frame = +1

Query: 109 MAAAAGEAPRALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWE 288
           MA     +   LSQKE DV+MM AA+VHLGTKNC++QMERY +KRR+DGIYI NLGKTWE
Sbjct: 1   MATNGSASSAQLSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWE 60

Query: 289 KLQLAARVIVAIENP 333
           KLQ+AARVIVAIENP
Sbjct: 61  KLQMAARVIVAIENP 75

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>RSSA_DAUCA (O80377) 40S ribosomal protein SA (p40)|
          Length = 297

 Score =  114 bits (286), Expect = 5e-26
 Identities = 54/66 (81%), Positives = 59/66 (89%)
 Frame = +1

Query: 136 RALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVI 315
           R LS  E D+QMM AA+VHLGTKNCDFQMERY +KRR+DGIYIINLGKTWEKL LAARVI
Sbjct: 6   RELSTMEADIQMMCAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLMLAARVI 65

Query: 316 VAIENP 333
           V+IENP
Sbjct: 66  VSIENP 71

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>RSSA_BRANA (Q9ZSR8) 40S ribosomal protein SA (p40) (Laminin receptor-like|
           protein)
          Length = 292

 Score =  112 bits (280), Expect = 2e-25
 Identities = 52/71 (73%), Positives = 60/71 (84%)
 Frame = +1

Query: 121 AGEAPRALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQL 300
           A      LSQKE D++MM AA+VHLGTKNC++QMERY +KRR+DGIYI NLGKTWEKL +
Sbjct: 2   AANGSTQLSQKEADIKMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLMM 61

Query: 301 AARVIVAIENP 333
           AARVIVAIENP
Sbjct: 62  AARVIVAIENP 72

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>RSSA_DROME (P38979) 40S ribosomal protein SA (p40) (Stubarista protein)|
           (Laminin receptor homolog) (K14)
          Length = 270

 Score = 95.5 bits (236), Expect = 3e-20
 Identities = 44/64 (68%), Positives = 53/64 (82%)
 Frame = +1

Query: 142 LSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVA 321
           LS KE D+  ML A  HLG++N +FQME+Y YKRR+DG+ I+NLGKTWEKLQLAAR IVA
Sbjct: 8   LSLKEDDITKMLVATTHLGSENVNFQMEQYVYKRRADGVNILNLGKTWEKLQLAARAIVA 67

Query: 322 IENP 333
           I+NP
Sbjct: 68  IDNP 71

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>RSSA_MOUSE (P14206) 40S ribosomal protein SA (p40) (34/67 kDa laminin|
           receptor)
          Length = 294

 Score = 94.4 bits (233), Expect = 6e-20
 Identities = 46/64 (71%), Positives = 51/64 (79%)
 Frame = +1

Query: 142 LSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVA 321
           L  KE+DV  +LAA  HLG  N DFQME+Y YKR+SDGIYIINL +TWEKL LAAR IVA
Sbjct: 7   LQMKEEDVLKLLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVA 66

Query: 322 IENP 333
           IENP
Sbjct: 67  IENP 70

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>RSSA_RAT (P38983) 40S ribosomal protein SA (p40) (34/67 kDa laminin|
           receptor)
          Length = 294

 Score = 93.6 bits (231), Expect = 1e-19
 Identities = 46/64 (71%), Positives = 50/64 (78%)
 Frame = +1

Query: 142 LSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVA 321
           L  KE+DV   LAA  HLG  N DFQME+Y YKR+SDGIYIINL +TWEKL LAAR IVA
Sbjct: 7   LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVA 66

Query: 322 IENP 333
           IENP
Sbjct: 67  IENP 70

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>RSSA_HUMAN (P08865) 40S ribosomal protein SA (p40) (34/67 kDa laminin|
           receptor) (Colon carcinoma laminin-binding protein)
           (NEM/1CHD4) (Multidrug resistance-associated protein
           MGr1-Ag)
          Length = 294

 Score = 93.6 bits (231), Expect = 1e-19
 Identities = 46/64 (71%), Positives = 50/64 (78%)
 Frame = +1

Query: 142 LSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVA 321
           L  KE+DV   LAA  HLG  N DFQME+Y YKR+SDGIYIINL +TWEKL LAAR IVA
Sbjct: 7   LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVA 66

Query: 322 IENP 333
           IENP
Sbjct: 67  IENP 70

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>RSSA_CRIGR (P38982) 40S ribosomal protein SA (p40) (34/67 kDa laminin|
           receptor)
          Length = 294

 Score = 93.6 bits (231), Expect = 1e-19
 Identities = 46/64 (71%), Positives = 50/64 (78%)
 Frame = +1

Query: 142 LSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVA 321
           L  KE+DV   LAA  HLG  N DFQME+Y YKR+SDGIYIINL +TWEKL LAAR IVA
Sbjct: 7   LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVA 66

Query: 322 IENP 333
           IENP
Sbjct: 67  IENP 70

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>RSSA_BOVIN (P26452) 40S ribosomal protein SA (p40) (C10 protein)|
          Length = 294

 Score = 93.6 bits (231), Expect = 1e-19
 Identities = 46/64 (71%), Positives = 50/64 (78%)
 Frame = +1

Query: 142 LSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVA 321
           L  KE+DV   LAA  HLG  N DFQME+Y YKR+SDGIYIINL +TWEKL LAAR IVA
Sbjct: 7   LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVA 66

Query: 322 IENP 333
           IENP
Sbjct: 67  IENP 70

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>RSSA_CHICK (P50890) 40S ribosomal protein SA (p40) (34/67 kDa laminin|
           receptor) (37LRP)
          Length = 296

 Score = 93.6 bits (231), Expect = 1e-19
 Identities = 46/64 (71%), Positives = 50/64 (78%)
 Frame = +1

Query: 142 LSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVA 321
           L  KE+DV   LAA  HLG  N DFQME+Y YKR+SDGIYIINL +TWEKL LAAR IVA
Sbjct: 8   LQMKEEDVLKFLAAGTHLGGTNLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIVA 67

Query: 322 IENP 333
           IENP
Sbjct: 68  IENP 71

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>RS0B_SCHPO (Q9P546) 40S ribosomal protein S0-B|
          Length = 287

 Score = 91.7 bits (226), Expect = 4e-19
 Identities = 42/67 (62%), Positives = 53/67 (79%)
 Frame = +1

Query: 133 PRALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARV 312
           P  L+  + D++ +LAAD H+G+KN + +ME Y +KRRSDGI+IINLGKTWEKL LAARV
Sbjct: 8   PSVLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARV 67

Query: 313 IVAIENP 333
           I  IENP
Sbjct: 68  IATIENP 74

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>RS0A_SCHPO (Q9Y7L8) 40S ribosomal protein S0-A|
          Length = 292

 Score = 89.4 bits (220), Expect = 2e-18
 Identities = 38/67 (56%), Positives = 54/67 (80%)
 Frame = +1

Query: 133 PRALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARV 312
           P  L+  ++D++ +LAA+ H+G+KN + +M+ Y +KRRSDG++I+NLGKTWEKL LAARV
Sbjct: 7   PNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAARV 66

Query: 313 IVAIENP 333
           I  IENP
Sbjct: 67  IATIENP 73

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>RSSA_TRIGR (P38980) 40S ribosomal protein SA (p40) (34/67 kDa laminin-binding|
           protein)
          Length = 316

 Score = 88.2 bits (217), Expect = 5e-18
 Identities = 40/64 (62%), Positives = 50/64 (78%)
 Frame = +1

Query: 142 LSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVA 321
           L+ KE DVQ  LA+  H+G+ N D+QM +Y YKR+ DG YIINL +TWEKL +AAR+IVA
Sbjct: 8   LALKEDDVQKFLASGAHIGSSNLDYQMTQYVYKRKPDGTYIINLRRTWEKLLMAARIIVA 67

Query: 322 IENP 333
           IENP
Sbjct: 68  IENP 71

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>RS0_PNECA (Q01661) 40S ribosomal protein S0 (Extracellular matrix receptor|
           protein)
          Length = 295

 Score = 87.8 bits (216), Expect = 6e-18
 Identities = 36/63 (57%), Positives = 53/63 (84%)
 Frame = +1

Query: 145 SQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVAI 324
           +Q   D++M+++A+ H+G++NC+ +ME Y +KRR+DG++IINLGK WEKL LAAR+IV I
Sbjct: 6   AQPAADIEMLISANCHIGSRNCELRMEPYVFKRRADGVHIINLGKRWEKLILAARIIVTI 65

Query: 325 ENP 333
           ENP
Sbjct: 66  ENP 68

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>RSSA_URECA (P38981) 40S ribosomal protein SA (p40) (34/67 kDa laminin-binding|
           protein)
          Length = 317

 Score = 83.6 bits (205), Expect = 1e-16
 Identities = 41/64 (64%), Positives = 46/64 (71%)
 Frame = +1

Query: 142 LSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVA 321
           L+ KE+DV   LA   HLG  N DFQME+Y YKRR DG  IIN+ KTWEK+ LAAR I A
Sbjct: 8   LALKEEDVTKFLACASHLGANNVDFQMEQYVYKRRPDGTSIINVRKTWEKVLLAARAIAA 67

Query: 322 IENP 333
           IENP
Sbjct: 68  IENP 71

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>RSSA_ECHGR (P46770) 40S ribosomal protein SA (p40) (Laminin-binding protein)|
          Length = 268

 Score = 82.8 bits (203), Expect = 2e-16
 Identities = 38/65 (58%), Positives = 50/65 (76%)
 Frame = +1

Query: 139 ALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIV 318
           AL  KE D+++M+AA VHLG+ N ++QM++Y Y R  +G +II+L KTWEKL LAAR I 
Sbjct: 7   ALELKEDDIRLMVAAKVHLGSTNANYQMQQYVYDRNDEGNHIIHLNKTWEKLLLAARAIC 66

Query: 319 AIENP 333
           AIENP
Sbjct: 67  AIENP 71

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>RSSA_CHLVR (P38984) 40S ribosomal protein SA (p40) (33 kDa laminin-binding|
           protein)
          Length = 293

 Score = 82.4 bits (202), Expect = 3e-16
 Identities = 41/65 (63%), Positives = 49/65 (75%)
 Frame = +1

Query: 139 ALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIV 318
           ALS KE+DV   LAA VHLG+ N     + Y +KR+SDGI+IINL KTWEKL LAAR+I 
Sbjct: 7   ALSLKEEDVVKFLAAGVHLGSTNVGSSCQGYVFKRKSDGIHIINLRKTWEKLILAARIIA 66

Query: 319 AIENP 333
           +IENP
Sbjct: 67  SIENP 71

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>RSSA_CAEEL (P46769) Probable 40S ribosomal protein SA (p40)|
          Length = 275

 Score = 80.9 bits (198), Expect = 7e-16
 Identities = 41/72 (56%), Positives = 51/72 (70%)
 Frame = +1

Query: 118 AAGEAPRALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQ 297
           + G A  AL+  E+DV  +LA   HLG+ N +FQM++Y YKRR DG  IIN+ KTWEKL 
Sbjct: 1   SGGAAHSALT--EEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFDGPNIINVKKTWEKLL 58

Query: 298 LAARVIVAIENP 333
           LAAR I A+ENP
Sbjct: 59  LAARAIAAVENP 70

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>RS0_NEUCR (Q01291) 40S ribosomal protein S0 (Ribosome-associated protein 1)|
          Length = 290

 Score = 76.6 bits (187), Expect = 1e-14
 Identities = 33/72 (45%), Positives = 48/72 (66%)
 Frame = +1

Query: 118 AAGEAPRALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQ 297
           A    P   +    D++ +LAA  H+G+KN    M+ Y +K R+DG+ I+N+GKTWEK+ 
Sbjct: 2   APANLPSIFNATSTDIEQLLAAQCHIGSKNLGVHMQPYLWKTRADGVNILNVGKTWEKIV 61

Query: 298 LAARVIVAIENP 333
           LAAR+I AI+NP
Sbjct: 62  LAARIIAAIDNP 73

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>RS0B_YEAST (P46654) 40S ribosomal protein S0-B (Nucleic acid-binding protein|
           NAB1B)
          Length = 251

 Score = 76.3 bits (186), Expect = 2e-14
 Identities = 33/67 (49%), Positives = 44/67 (65%)
 Frame = +1

Query: 133 PRALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARV 312
           P       +D Q++LAA+ HLG +N     E Y +  R DG+++IN+GKTWEKL LAAR+
Sbjct: 3   PATFDLTPEDAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARI 62

Query: 313 IVAIENP 333
           I AI NP
Sbjct: 63  IAAIPNP 69

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>RS0A_YEAST (P32905) 40S ribosomal protein S0-A (Nucleic acid-binding protein|
           NAB1A)
          Length = 251

 Score = 76.3 bits (186), Expect = 2e-14
 Identities = 33/67 (49%), Positives = 44/67 (65%)
 Frame = +1

Query: 133 PRALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARV 312
           P       +D Q++LAA+ HLG +N     E Y +  R DG+++IN+GKTWEKL LAAR+
Sbjct: 3   PATFDLTPEDAQLLLAANTHLGARNVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARI 62

Query: 313 IVAIENP 333
           I AI NP
Sbjct: 63  IAAIPNP 69

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>RS0_CANAL (O42817) 40S ribosomal protein S0|
          Length = 253

 Score = 73.6 bits (179), Expect = 1e-13
 Identities = 33/66 (50%), Positives = 45/66 (68%)
 Frame = +1

Query: 133 PRALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARV 312
           P +     +D +++LAA+VHLG KN     + Y YK R DG+ IIN+GKTWEK+ LAAR+
Sbjct: 4   PASFDLTPEDAKLLLAANVHLGAKNVQVHNKPYVYKTRPDGMNIINIGKTWEKIVLAARI 63

Query: 313 IVAIEN 330
           I A+ N
Sbjct: 64  IAAVPN 69

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>RS2_METJA (P54109) 30S ribosomal protein S2P|
          Length = 222

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 24/64 (37%), Positives = 44/64 (68%), Gaps = 2/64 (3%)
 Frame = +1

Query: 142 LSQKEQDVQM--MLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVI 315
           +S+KE  V +   LA+ +H+GT+     ME++ Y+ RSDG+Y++++ KT E+L++AA+ +
Sbjct: 1   MSEKELLVPLDTYLASGIHIGTQQKTKDMEKFIYRVRSDGLYVLDVRKTDERLRIAAKFL 60

Query: 316 VAIE 327
              E
Sbjct: 61  ARYE 64

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>RS2_SULTO (Q96YW5) 30S ribosomal protein S2P|
          Length = 225

 Score = 47.4 bits (111), Expect = 9e-06
 Identities = 19/47 (40%), Positives = 34/47 (72%)
 Frame = +1

Query: 175 LAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVI 315
           L+A VH+GT  C   ME++ Y+ R +G+Y++++ K  E+L++AAR +
Sbjct: 37  LSAGVHIGTHTCTKYMEKFVYRVRPEGLYVLDVRKIDERLRIAARFL 83

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>RS2_SULAC (P39478) 30S ribosomal protein S2P|
          Length = 225

 Score = 47.4 bits (111), Expect = 9e-06
 Identities = 20/47 (42%), Positives = 34/47 (72%)
 Frame = +1

Query: 175 LAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVI 315
           L+A VH+GT  C   MER+ Y+ R +G+Y++++ K  E+L++AA+ I
Sbjct: 37  LSAGVHIGTHTCTRYMERFIYRVRPEGLYVLDVRKIDERLRVAAKFI 83

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>RS2_SULSO (P95993) 30S ribosomal protein S2P|
          Length = 231

 Score = 47.0 bits (110), Expect = 1e-05
 Identities = 19/51 (37%), Positives = 36/51 (70%)
 Frame = +1

Query: 163 VQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVI 315
           V   L+A VH+GT +C   ME + Y+ R++G+Y++++ K  E+L++AA+ +
Sbjct: 39  VDTYLSAGVHIGTHSCTKYMESFVYRVRAEGLYVLDVRKIDERLRIAAKFL 89

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>RS2_PYRHO (O59295) 30S ribosomal protein S2P|
          Length = 202

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 19/51 (37%), Positives = 35/51 (68%)
 Frame = +1

Query: 175 LAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVAIE 327
           LAA VH+GT+     M+++ Y+ R DG+Y++++ KT E+L++A + +   E
Sbjct: 13  LAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLARFE 63

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>RS2_PYRFU (Q8U0F0) 30S ribosomal protein S2P|
          Length = 202

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 19/51 (37%), Positives = 35/51 (68%)
 Frame = +1

Query: 175 LAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVAIE 327
           LAA VH+GT+     M+++ Y+ R DG+Y++++ KT E+L++A + +   E
Sbjct: 13  LAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLAKFE 63

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>RS2_METTH (O26150) 30S ribosomal protein S2P|
          Length = 198

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 19/51 (37%), Positives = 35/51 (68%)
 Frame = +1

Query: 175 LAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVAIE 327
           LAA +H+GT+     ME+Y Y+ RSDG+Y++++ KT +++  A++ +   E
Sbjct: 12  LAAGLHIGTQQKTADMEKYIYRVRSDGLYVLDIRKTNDRVIAASKFLSKYE 62

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>RS2_PYRAB (Q9V191) 30S ribosomal protein S2P|
          Length = 202

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 18/51 (35%), Positives = 35/51 (68%)
 Frame = +1

Query: 175 LAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVAIE 327
           LAA VH+GT+     M+++ Y+ R DG+Y++++ KT E+L++A + +   +
Sbjct: 13  LAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLARFD 63

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>RS2_METKA (Q8TV23) 30S ribosomal protein S2P|
          Length = 203

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 19/47 (40%), Positives = 34/47 (72%)
 Frame = +1

Query: 175 LAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVI 315
           LAA VH+GT+     ME + Y+ R+DG+++I++ KT E++++AA  +
Sbjct: 15  LAAGVHIGTQQKTKDMEPFIYRTRADGLHVIDVRKTDERIRIAANFL 61

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>RS2_PYRKO (Q5JJD2) 30S ribosomal protein S2P|
          Length = 201

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 18/51 (35%), Positives = 35/51 (68%)
 Frame = +1

Query: 175 LAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVAIE 327
           LAA VH+GT+     M+++ Y+ R DG+Y++++ KT E+L++A + +   +
Sbjct: 12  LAAGVHIGTQQKTKDMKKFIYRVRQDGLYVLDVRKTDERLRVAGKFLAKFD 62

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>RS2_METMA (Q8PW41) 30S ribosomal protein S2P|
          Length = 224

 Score = 44.7 bits (104), Expect = 6e-05
 Identities = 22/68 (32%), Positives = 44/68 (64%)
 Frame = +1

Query: 112 AAAAGEAPRALSQKEQDVQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEK 291
           AA+A E   +L   ++     LAA VH+GT+     M R+ Y+ R+DG+Y++++  T E+
Sbjct: 26  AASAKEGSTSLVSIDE----YLAAGVHIGTQQKTQDMMRFVYRVRTDGLYVLDIQSTDER 81

Query: 292 LQLAARVI 315
           +++A++++
Sbjct: 82  IRVASKLL 89

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>RS2_METAC (Q8TT39) 30S ribosomal protein S2P|
          Length = 225

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 17/47 (36%), Positives = 35/47 (74%)
 Frame = +1

Query: 175 LAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVI 315
           LAA VH+GT+     M R+ Y+ R+DG+Y++++  T E++++A++++
Sbjct: 44  LAAGVHIGTQQKTQDMMRFVYRVRTDGLYVLDIQSTDERIRVASKLL 90

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>RS2_ARCFU (O29132) 30S ribosomal protein S2P|
          Length = 197

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 18/51 (35%), Positives = 35/51 (68%)
 Frame = +1

Query: 175 LAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVAIE 327
           LAA VH+GT+     M+++ +K R DG+Y++++ K  E++++AA+ +   E
Sbjct: 16  LAAGVHIGTQIKTGDMKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRYE 66

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>RS2_HALMA (P29202) 30S ribosomal protein S2P (HS2) (ORFMSG)|
          Length = 267

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 18/48 (37%), Positives = 33/48 (68%)
 Frame = +1

Query: 163 VQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAA 306
           V+  L A VH+GT+     MER+ ++ R+DG+Y++++  T E+++ AA
Sbjct: 82  VEDYLGAGVHIGTQQKTQDMERFIHRVRTDGLYVLDVSMTDERIRTAA 129

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>RS2_HALSA (P57713) 30S ribosomal protein S2P|
          Length = 249

 Score = 41.2 bits (95), Expect = 6e-04
 Identities = 19/59 (32%), Positives = 39/59 (66%), Gaps = 4/59 (6%)
 Frame = +1

Query: 142 LSQKEQD----VQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAA 306
           +S +E D    V+  L A VH+GT+     M+R+ ++ R+DG+Y++++ +T ++++ AA
Sbjct: 53  MSDEEADLLIPVEDYLGAGVHIGTQQKTNDMDRFIHRVRTDGLYVLDVSRTDDRVRTAA 111

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>RS2_THEAC (P57712) 30S ribosomal protein S2P|
          Length = 199

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 18/47 (38%), Positives = 31/47 (65%)
 Frame = +1

Query: 187 VHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVAIE 327
           VH+GT+     M+ Y +K R+DG+YI+++ KT  KL +A +++   E
Sbjct: 17  VHIGTQVKSSDMKPYIFKIRNDGLYILDVKKTNSKLIVAGKMLARFE 63

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>RS2_THEVO (Q97BQ4) 30S ribosomal protein S2P|
          Length = 199

 Score = 38.1 bits (87), Expect = 0.005
 Identities = 17/47 (36%), Positives = 30/47 (63%)
 Frame = +1

Query: 187 VHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVAIE 327
           VH+GT+     M+ Y +K R+DG+YI+++ KT  KL  A +++   +
Sbjct: 17  VHIGTQVKSSDMKPYIFKIRNDGLYILDVKKTNSKLIAAGKMLARFD 63

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>RS2_PICTO (Q6L1Q0) 30S ribosomal protein S2P|
          Length = 200

 Score = 36.6 bits (83), Expect = 0.016
 Identities = 15/43 (34%), Positives = 29/43 (67%)
 Frame = +1

Query: 187 VHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVI 315
           +H+GT+     M+ Y +K R+DG+YI+++ KT   L +A +++
Sbjct: 18  IHIGTQIKSKDMDPYIFKIRNDGLYILDIRKTNHALIIAGKML 60

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>RS2_THETN (Q8RA21) 30S ribosomal protein S2|
          Length = 235

 Score = 32.0 bits (71), Expect = 0.39
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
 Frame = +1

Query: 163 VQMMLAADVHLG--TKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLA 303
           ++ +L A VH G  T+  + +M  Y +  R+ GIYII+L +T EKL+ A
Sbjct: 6   MKQLLEAGVHFGHQTRRWNPKMAPYIFTERN-GIYIIDLQQTVEKLEQA 53

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>RS2_CHLPN (Q9Z7K9) 30S ribosomal protein S2|
          Length = 277

 Score = 30.8 bits (68), Expect = 0.88
 Identities = 16/49 (32%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
 Frame = +1

Query: 163 VQMMLAADVHLG--TKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLA 303
           ++ +++A  H G  T+  + +M+ Y ++ ++ G+YIINL KT ++L+ A
Sbjct: 10  IKDLMSAGAHFGHQTRRWNPKMKLYIFEEKN-GLYIINLAKTLQQLRNA 57

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>TMC2_HUMAN (Q8TDI7) Transmembrane cochlear-expressed protein 2|
          Length = 906

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +3

Query: 216 PDGALRLQAPLRRHLHHQPGQDMGEAPARCEGHRRHREPA 335
           P    R Q   RRH      Q+ GEA   CEG R+  E A
Sbjct: 66  PGSPRRKQTGRRRHREELGEQERGEAERTCEGRRKRDERA 105

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>RT02_ARATH (Q9GCB9) Mitochondrial ribosomal protein S2|
          Length = 219

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +1

Query: 163 VQMMLAADVHLGTKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVI 315
           +Q +L    HLG +  +   ++YAY  R +G+ II+  KT   L+ AA  +
Sbjct: 8   IQKLLNTGAHLGRRAAEHHFKQYAYGTR-NGMTIIDSDKTLICLRSAAHFV 57

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>RS2_CHLCV (Q824U3) 30S ribosomal protein S2|
          Length = 276

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 17/49 (34%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
 Frame = +1

Query: 163 VQMMLAADVHLG--TKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLA 303
           V+ ++ A  H G  T+  + +M+ Y ++ ++ G+YIINL KT  +L+ A
Sbjct: 11  VKDLMEAGAHFGHQTRRWNPKMKLYIFEEKN-GLYIINLAKTLYQLRNA 58

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>RS2_ONYPE (Q6YR51) 30S ribosomal protein S2|
          Length = 271

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 18/55 (32%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
 Frame = +1

Query: 166 QMMLAADVHLG--TKNCDFQMERYAYKRRSDGIYIINLGKTWEKLQLAARVIVAI 324
           + +L + V+ G  T+  + +M+ Y +  R+ GI+IINL KT E+++ A + ++ I
Sbjct: 7   KQLLESGVYFGHATRKWNPKMKPYIFTSRN-GIHIINLKKTSEEIEKAYQELLNI 60


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,841,436
Number of Sequences: 219361
Number of extensions: 460553
Number of successful extensions: 1763
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 1711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1762
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result