ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baet57h11 |
|---|---|
| Clone Library Name | barley_pub |
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 30.0 bits (66), Expect = 1.6 Identities = 16/37 (43%), Positives = 18/37 (48%) Frame = +3 Query: 6 PHNESNSQRSRQQEKXHSLS*LPPVPITASYPATRRG 116 P + RS Q K HS S P P T+S P RRG Sbjct: 680 PSRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRG 716
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 30.0 bits (66), Expect = 1.6 Identities = 17/44 (38%), Positives = 19/44 (43%) Frame = +3 Query: 6 PHNESNSQRSRQQEKXHSLS*LPPVPITASYPATRRGRHGQQVG 137 P + RS Q K HS S P P T+S P RRG G Sbjct: 685 PGRSTREARSPQPNKRHSPSPRPRAPQTSSPPPVRRGASASPQG 728
>MGR7_RAT (P35400) Metabotropic glutamate receptor 7 precursor (mGluR7)| Length = 915 Score = 29.3 bits (64), Expect = 2.7 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = -2 Query: 163 QRRRNTAGTPTCWPCRP 113 QR++ GTP CW C P Sbjct: 531 QRKKTQKGTPCCWTCEP 547
>MGR7_MOUSE (Q68ED2) Metabotropic glutamate receptor 7 precursor (mGluR7)| Length = 915 Score = 29.3 bits (64), Expect = 2.7 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = -2 Query: 163 QRRRNTAGTPTCWPCRP 113 QR++ GTP CW C P Sbjct: 531 QRKKTQKGTPCCWTCEP 547
>MGR7_HUMAN (Q14831) Metabotropic glutamate receptor 7 precursor (mGluR7)| Length = 915 Score = 29.3 bits (64), Expect = 2.7 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = -2 Query: 163 QRRRNTAGTPTCWPCRP 113 QR++ GTP CW C P Sbjct: 531 QRKKTQKGTPCCWTCEP 547
>WASL_BOVIN (Q95107) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 505 Score = 29.3 bits (64), Expect = 2.7 Identities = 12/26 (46%), Positives = 14/26 (53%) Frame = -1 Query: 281 GSAPSPPGTCPVASPRPPRVSLPADG 204 G+ P PP P A+P PP S P G Sbjct: 308 GAPPPPPSRAPTAAPPPPPPSRPGVG 333
>MGR7_PONPY (Q5RDQ8) Metabotropic glutamate receptor 7 precursor (mGluR7)| Length = 922 Score = 29.3 bits (64), Expect = 2.7 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = -2 Query: 163 QRRRNTAGTPTCWPCRP 113 QR++ GTP CW C P Sbjct: 531 QRKKTQKGTPCCWTCEP 547
>RAE1E_MOUSE (Q9CZQ6) Retinoic acid early inducible protein 1 epsilon precursor| (RAE-1epsilon) Length = 251 Score = 28.5 bits (62), Expect = 4.6 Identities = 17/34 (50%), Positives = 22/34 (64%) Frame = +2 Query: 11 QRKQQPAIETARKASLTQLATTSPDHSELPSHST 112 Q K++P T+R S+TQL +TSP PSHST Sbjct: 198 QSKEKPR-STSRSPSITQLTSTSP--LPPPSHST 228
>WASL_HUMAN (O00401) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 505 Score = 28.5 bits (62), Expect = 4.6 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = -1 Query: 281 GSAPSPPGTCPVASPRPPRVSLPA 210 G+ P PP P A+P PP S P+ Sbjct: 308 GAPPPPPSRAPTAAPPPPPPSRPS 331
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 28.5 bits (62), Expect = 4.6 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = -1 Query: 281 GSAPSPPGTCPVASPRPPRVSLPADG 204 G P+PP P +P PP S P+ G Sbjct: 142 GPTPTPPPAVPSTAPGPPPPSTPSSG 167
>ID4_HUMAN (P47928) DNA-binding protein inhibitor ID-4 (Inhibitor of DNA| binding 4) Length = 161 Score = 28.5 bits (62), Expect = 4.6 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 4/26 (15%) Frame = -1 Query: 272 PSPP----GTCPVASPRPPRVSLPAD 207 P+PP GTCP A PR P +L D Sbjct: 121 PAPPHHPAGTCPAAPPRTPLTALNTD 146
>RAE1C_MOUSE (O08604) Retinoic acid early inducible protein 1 gamma precursor| (RAE-1gamma) Length = 253 Score = 28.5 bits (62), Expect = 4.6 Identities = 17/34 (50%), Positives = 22/34 (64%) Frame = +2 Query: 11 QRKQQPAIETARKASLTQLATTSPDHSELPSHST 112 Q K++P T+R S+TQL +TSP PSHST Sbjct: 200 QSKEKPR-STSRSPSITQLTSTSP--LPPPSHST 230
>RAE1B_MOUSE (O08603) Retinoic acid early inducible protein 1 beta precursor| (RAE-1beta) Length = 253 Score = 28.5 bits (62), Expect = 4.6 Identities = 17/34 (50%), Positives = 22/34 (64%) Frame = +2 Query: 11 QRKQQPAIETARKASLTQLATTSPDHSELPSHST 112 Q K++P T+R S+TQL +TSP PSHST Sbjct: 200 QSKEKPR-STSRSPSITQLTSTSP--LPPPSHST 230
>NKTR_HUMAN (P30414) NK-tumor recognition protein (Natural-killer cells| cyclophilin-related protein) (NK-TR protein) Length = 1462 Score = 28.1 bits (61), Expect = 6.0 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = +1 Query: 4 DHTTKATASDRDSKKSXTHSASYHQSRSQRATQPLDAVGMASKSAS 141 D + T S RDS +S +HS SY + S+ T + S+S S Sbjct: 506 DVQSSLTHSSRDSYRSKSHSQSYSRGSSRSRTASKSSSHSRSRSKS 551
>RAE1A_MOUSE (O08602) Retinoic acid early inducible protein 1 alpha precursor| (RAE-1alpha) Length = 253 Score = 28.1 bits (61), Expect = 6.0 Identities = 17/34 (50%), Positives = 22/34 (64%) Frame = +2 Query: 11 QRKQQPAIETARKASLTQLATTSPDHSELPSHST 112 Q K++P T+R S+TQL +TSP PSHST Sbjct: 200 QPKEKPR-STSRSPSITQLTSTSP--LPPPSHST 230
>ID4_MOUSE (P41139) DNA-binding protein inhibitor ID-4 (Inhibitor of DNA| binding 4) Length = 161 Score = 28.1 bits (61), Expect = 6.0 Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 4/26 (15%) Frame = -1 Query: 272 PSPP----GTCPVASPRPPRVSLPAD 207 P+PP G CPVA PR P +L D Sbjct: 121 PAPPLHPAGACPVAPPRTPLTALNTD 146
>WASL_RAT (O08816) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 501 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = -1 Query: 281 GSAPSPPGTCPVASPRPPRVSLP 213 G+ P PP P A+P PP S P Sbjct: 305 GAPPPPPSRAPTAAPPPPPPSRP 327
>WASL_MOUSE (Q91YD9) Neural Wiskott-Aldrich syndrome protein (N-WASP)| Length = 501 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = -1 Query: 281 GSAPSPPGTCPVASPRPPRVSLP 213 G+ P PP P A+P PP S P Sbjct: 305 GAPPPPPSRAPTAAPPPPPPSRP 327
>ATF5_MOUSE (O70191) Cyclic AMP-dependent transcription factor ATF-5| (Activating transcription factor 5-alpha/beta) (Transcription factor ATFx) (Transcription factor-like protein ODA-10) (BZIP protein ATF7) (NRIF3-associated protein) (NAP1) Length = 283 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/16 (68%), Positives = 11/16 (68%) Frame = -1 Query: 275 APSPPGTCPVASPRPP 228 AP PPGT P SP PP Sbjct: 81 APLPPGTLPPPSPAPP 96
>ATF5_RAT (Q6P788) Cyclic AMP-dependent transcription factor ATF-5| (Activating transcription factor 5) (Transcription factor ATFx) Length = 281 Score = 28.1 bits (61), Expect = 6.0 Identities = 11/16 (68%), Positives = 11/16 (68%) Frame = -1 Query: 275 APSPPGTCPVASPRPP 228 AP PPGT P SP PP Sbjct: 81 APLPPGTLPPPSPAPP 96 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.308 0.120 0.341 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,344,461 Number of Sequences: 219361 Number of extensions: 501011 Number of successful extensions: 2126 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 1903 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2123 length of database: 80,573,946 effective HSP length: 69 effective length of database: 65,438,037 effective search space used: 1570512888 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits)
