ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet57h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PIP11_ORYSA (Q6EU94) Aquaporin PIP1.1 (Plasma membrane intrinsic... 39 0.004
2PIP13_ORYSA (Q9SXF8) Aquaporin PIP 1.3 (Plasma membrane intrinsi... 38 0.009
3PIP13_ARATH (Q08733) Aquaporin PIP1.3 (Plasma membrane intrinsic... 35 0.044
4PIP12_ARATH (Q06611) Aquaporin PIP1.2 (Plasma membrane intrinsic... 35 0.044
5PIP11_VICFA (P61838) Aquaporin PIP1.1 (Plasma membrane intrinsic... 35 0.044
6PIP11_ARATH (P61837) Aquaporin PIP1.1 (Plasma membrane intrinsic... 35 0.044
7PIP14_ARATH (Q39196) Probable aquaporin PIP1.4 (Plasma membrane ... 35 0.044
8PIP15_ARATH (Q8LAA6) Probable aquaporin PIP1.5 (Plasma membrane ... 33 0.17
9PIP2_PEA (P25794) Probable aquaporin PIP-type 7a (Turgor-respons... 31 1.1
10PIP1_LYCES (Q08451) Probable aquaporin PIP-type pTOM75 (Ripening... 29 3.1
11PAP3_ORYSA (Q7XBW5) Probable plastid-lipid associated protein 3,... 29 3.1

>PIP11_ORYSA (Q6EU94) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a)|
           (PIP1a) (OsPIP1.1) (Water channel protein RWC1) (RWC-1)
          Length = 289

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +1

Query: 91  MEGKEEDVRLGANKYSER 144
           MEGKEEDVRLGAN+YSER
Sbjct: 1   MEGKEEDVRLGANRYSER 18



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>PIP13_ORYSA (Q9SXF8) Aquaporin PIP 1.3 (Plasma membrane intrinsic protein 1.3)|
           (OsPIP1.3) (Water channel protein RWC3) (RWC-3)
          Length = 288

 Score = 37.7 bits (86), Expect = 0.009
 Identities = 16/18 (88%), Positives = 18/18 (100%)
 Frame = +1

Query: 91  MEGKEEDVRLGANKYSER 144
           MEGKEEDVRLGAN+Y+ER
Sbjct: 1   MEGKEEDVRLGANRYTER 18



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>PIP13_ARATH (Q08733) Aquaporin PIP1.3 (Plasma membrane intrinsic protein 1c)|
           (PIP1c) (Transmembrane protein B) (TMP-B)
          Length = 286

 Score = 35.4 bits (80), Expect = 0.044
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +1

Query: 91  MEGKEEDVRLGANKYSER 144
           MEGKEEDVR+GANK+ ER
Sbjct: 1   MEGKEEDVRVGANKFPER 18



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>PIP12_ARATH (Q06611) Aquaporin PIP1.2 (Plasma membrane intrinsic protein 1b)|
           (PIP1b) (Transmembrane protein A) (TMP-A) (AthH2)
          Length = 286

 Score = 35.4 bits (80), Expect = 0.044
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +1

Query: 91  MEGKEEDVRLGANKYSER 144
           MEGKEEDVR+GANK+ ER
Sbjct: 1   MEGKEEDVRVGANKFPER 18



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>PIP11_VICFA (P61838) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a)|
           (PIP1a) (Aquaporin 1) (Plasma membrane aquaporin 1)
          Length = 286

 Score = 35.4 bits (80), Expect = 0.044
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +1

Query: 91  MEGKEEDVRLGANKYSER 144
           MEGKEEDVR+GANK+ ER
Sbjct: 1   MEGKEEDVRVGANKFPER 18



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>PIP11_ARATH (P61837) Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a)|
           (PIP1a) (Aquaporin 1) (Plasma membrane aquaporin 1)
          Length = 286

 Score = 35.4 bits (80), Expect = 0.044
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +1

Query: 91  MEGKEEDVRLGANKYSER 144
           MEGKEEDVR+GANK+ ER
Sbjct: 1   MEGKEEDVRVGANKFPER 18



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>PIP14_ARATH (Q39196) Probable aquaporin PIP1.4 (Plasma membrane intrinsic|
           protein 1.4) (Transmembrane protein C) (TMP-C)
          Length = 287

 Score = 35.4 bits (80), Expect = 0.044
 Identities = 15/18 (83%), Positives = 17/18 (94%)
 Frame = +1

Query: 91  MEGKEEDVRLGANKYSER 144
           MEGKEEDVR+GANK+ ER
Sbjct: 1   MEGKEEDVRVGANKFPER 18



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>PIP15_ARATH (Q8LAA6) Probable aquaporin PIP1.5 (Plasma membrane intrinsic|
           protein 1d) (PIP1d)
          Length = 287

 Score = 33.5 bits (75), Expect = 0.17
 Identities = 14/18 (77%), Positives = 16/18 (88%)
 Frame = +1

Query: 91  MEGKEEDVRLGANKYSER 144
           MEGKEEDV +GANK+ ER
Sbjct: 1   MEGKEEDVNVGANKFPER 18



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>PIP2_PEA (P25794) Probable aquaporin PIP-type 7a (Turgor-responsive protein|
           7a) (Turgor-responsive protein 31)
          Length = 289

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +1

Query: 91  MEGKEEDVRLGANKYSER 144
           ME KE+DV LGANK+ ER
Sbjct: 1   MEAKEQDVSLGANKFPER 18



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>PIP1_LYCES (Q08451) Probable aquaporin PIP-type pTOM75 (Ripening-associated|
           membrane protein) (RAMP)
          Length = 286

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +1

Query: 94  EGKEEDVRLGANKYSE 141
           E KEEDV+LGANK+ E
Sbjct: 3   ENKEEDVKLGANKFRE 18



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>PAP3_ORYSA (Q7XBW5) Probable plastid-lipid associated protein 3, chloroplast|
           precursor
          Length = 374

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 1   SPHAHTKAAHLVPFQLRRASDHRPPARAAAMEGKEED 111
           SP  H+      PF+L   S  RPP  AAA  G  ++
Sbjct: 20  SPTIHSSTGSRRPFRLPLRSSRRPPVAAAAASGVPDE 56


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.127    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,618,068
Number of Sequences: 219361
Number of extensions: 245901
Number of successful extensions: 810
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 80,573,946
effective HSP length: 24
effective length of database: 75,309,282
effective search space used: 1807422768
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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