ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | baet57h05 |
|---|---|
| Clone Library Name | barley_pub |
>MYB1_HORVU (P20026) Myb-related protein Hv1| Length = 267 Score = 55.1 bits (131), Expect(2) = 6e-15 Identities = 24/25 (96%), Positives = 24/25 (96%) Frame = +3 Query: 153 CEKAHTNKGAWTKEEDDRLTAYIGA 227 CEKAHTNKGAWTKEEDDRLTAYI A Sbjct: 7 CEKAHTNKGAWTKEEDDRLTAYIKA 31 Score = 43.1 bits (100), Expect(2) = 6e-15 Identities = 22/32 (68%), Positives = 23/32 (71%), Gaps = 1/32 (3%) Frame = +1 Query: 226 HGEGCWRSLPKAAGLLR-WEELPPPLDNYLRP 318 HGEGCWRSLPKAAGLLR + NYLRP Sbjct: 32 HGEGCWRSLPKAAGLLRCGKSCRLRWINYLRP 63
>MYB4_ARATH (Q9SZP1) Transcription repressor MYB4 (Myb-related protein 4)| (AtMYB4) Length = 282 Score = 51.6 bits (122), Expect(2) = 6e-14 Identities = 22/25 (88%), Positives = 23/25 (92%) Frame = +3 Query: 153 CEKAHTNKGAWTKEEDDRLTAYIGA 227 CEKAHTNKGAWTKEED+RL AYI A Sbjct: 7 CEKAHTNKGAWTKEEDERLVAYIKA 31 Score = 43.1 bits (100), Expect(2) = 6e-14 Identities = 22/32 (68%), Positives = 23/32 (71%), Gaps = 1/32 (3%) Frame = +1 Query: 226 HGEGCWRSLPKAAGLLR-WEELPPPLDNYLRP 318 HGEGCWRSLPKAAGLLR + NYLRP Sbjct: 32 HGEGCWRSLPKAAGLLRCGKSCRLRWINYLRP 63
>MYB38_MAIZE (P20025) Myb-related protein Zm38| Length = 255 Score = 50.4 bits (119), Expect(2) = 1e-13 Identities = 21/25 (84%), Positives = 23/25 (92%) Frame = +3 Query: 153 CEKAHTNKGAWTKEEDDRLTAYIGA 227 CEKAHTN+GAWTKEED+RL AYI A Sbjct: 7 CEKAHTNRGAWTKEEDERLVAYIRA 31 Score = 43.1 bits (100), Expect(2) = 1e-13 Identities = 22/32 (68%), Positives = 23/32 (71%), Gaps = 1/32 (3%) Frame = +1 Query: 226 HGEGCWRSLPKAAGLLR-WEELPPPLDNYLRP 318 HGEGCWRSLPKAAGLLR + NYLRP Sbjct: 32 HGEGCWRSLPKAAGLLRCGKSCRLRWINYLRP 63
>MYBP_MAIZE (P27898) Myb-related protein P| Length = 399 Score = 35.8 bits (81), Expect(3) = 2e-06 Identities = 15/17 (88%), Positives = 15/17 (88%) Frame = +1 Query: 226 HGEGCWRSLPKAAGLLR 276 HGEG WRSLPK AGLLR Sbjct: 32 HGEGSWRSLPKNAGLLR 48 Score = 29.6 bits (65), Expect(3) = 2e-06 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = +3 Query: 153 CEKAHTNKGAWTKEEDDRLTAYI 221 CEK +G WT EED L YI Sbjct: 7 CEKVGLKRGRWTAEEDQLLANYI 29 Score = 22.7 bits (47), Expect(3) = 2e-06 Identities = 8/8 (100%), Positives = 8/8 (100%) Frame = +2 Query: 281 KSCRLRWI 304 KSCRLRWI Sbjct: 51 KSCRLRWI 58
>MYBC_MAIZE (P10290) Anthocyanin regulatory C1 protein| Length = 273 Score = 34.3 bits (77), Expect(2) = 2e-05 Identities = 15/30 (50%), Positives = 18/30 (60%) Frame = +3 Query: 138 GDVAGCEKAHTNKGAWTKEEDDRLTAYIGA 227 G A C K +GAWT +EDD L AY+ A Sbjct: 2 GRRACCAKEGVKRGAWTSKEDDALAAYVKA 31 Score = 31.2 bits (69), Expect(2) = 2e-05 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 8/39 (20%) Frame = +1 Query: 226 HGEGCWRSLPKAAGL--------LRWEELPPPLDNYLRP 318 HGEG WR +P+ AGL LRW NYLRP Sbjct: 32 HGEGKWREVPQKAGLRRCGKSCRLRWL-------NYLRP 63
>MYB4_ORYSA (Q7XBH4) Myb-related protein Myb4 (OsMyb4) (Transcription factor| RLTR1) Length = 257 Score = 33.5 bits (75), Expect(2) = 8e-05 Identities = 18/32 (56%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = +1 Query: 226 HGEGCWRSLPKAAGLLR-WEELPPPLDNYLRP 318 HG G WR+LPK AGLLR + NYLRP Sbjct: 32 HGHGNWRALPKQAGLLRCGKSCRLRWINYLRP 63 Score = 30.0 bits (66), Expect(2) = 8e-05 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +3 Query: 153 CEKAHTNKGAWTKEEDDRLTAYI 221 CEK KG WT EED L A+I Sbjct: 7 CEKMGLKKGPWTPEEDKVLVAHI 29
>MYB1_MAIZE (P20024) Myb-related protein Zm1| Length = 340 Score = 32.7 bits (73), Expect(2) = 1e-04 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = +3 Query: 153 CEKAHTNKGAWTKEEDDRLTAYI 221 C K N+G+WT +ED RL AYI Sbjct: 9 CAKVGLNRGSWTPQEDMRLIAYI 31 Score = 30.4 bits (67), Expect(2) = 1e-04 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Frame = +1 Query: 226 HGEGCWRSLPKAAGLLR-WEELPPPLDNYLRP 318 HG WR+LPK AGLLR + NYLRP Sbjct: 34 HGHTNWRALPKQAGLLRCGKSCRLRWINYLRP 65
>MYB2_PHYPA (P80073) Myb-related protein Pp2| Length = 421 Score = 32.0 bits (71), Expect(2) = 1e-04 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%) Frame = +1 Query: 226 HGEGCWRSLPKAAGLLR-WEELPPPLDNYLRP 318 +G CWR++PK AGLLR + NYLRP Sbjct: 32 NGLSCWRAIPKLAGLLRCGKSCRLRWTNYLRP 63 Score = 30.8 bits (68), Expect(2) = 1e-04 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +3 Query: 153 CEKAHTNKGAWTKEEDDRLTAYI 221 CEK +G WT EED +L ++I Sbjct: 7 CEKVGLRRGPWTSEEDQKLVSHI 29
>MYB86_ARATH (Q8LPH6) Transcription factor MYB86 (Myb-related protein 86)| (AtMYB86) (Myb homolog 4) (AtMyb4) Length = 352 Score = 34.7 bits (78), Expect(2) = 1e-04 Identities = 19/39 (48%), Positives = 20/39 (51%), Gaps = 8/39 (20%) Frame = +1 Query: 226 HGEGCWRSLPKAAGL--------LRWEELPPPLDNYLRP 318 HG GCW S+PK AGL LRW NYLRP Sbjct: 32 HGHGCWSSVPKLAGLQRCGKSCRLRW-------INYLRP 63 Score = 28.1 bits (61), Expect(2) = 1e-04 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +3 Query: 153 CEKAHTNKGAWTKEEDDRLTAYI 221 C K KG W+ EED++L YI Sbjct: 7 CFKQKLRKGLWSPEEDEKLLNYI 29
>ODO1_PETHY (Q50EX6) ODORANT1 protein (MYB-like protein ODO1)| Length = 294 Score = 31.2 bits (69), Expect(2) = 4e-04 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 8/39 (20%) Frame = +1 Query: 226 HGEGCWRSLPKAAGL--------LRWEELPPPLDNYLRP 318 +G+ CWR++PK AGL LRW NYLRP Sbjct: 32 NGQCCWRAVPKLAGLKRCGKSCRLRW-------TNYLRP 63 Score = 30.0 bits (66), Expect(2) = 4e-04 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +3 Query: 153 CEKAHTNKGAWTKEEDDRLTAYI 221 C+K KG WT EED +L ++I Sbjct: 7 CDKLGVKKGPWTAEEDKKLISFI 29
>MYB21_ARATH (Q9LK95) Transcription factor MYB21 (Myb-related protein 21)| (AtMYB21) (Myb homolog 3) (AtMyb3) Length = 226 Score = 30.8 bits (68), Expect(2) = 0.007 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 8/39 (20%) Frame = +1 Query: 226 HGEGCWRSLPKAAGL--------LRWEELPPPLDNYLRP 318 HG+G W SL K+AGL LRW NYLRP Sbjct: 40 HGDGVWNSLAKSAGLKRTGKSCRLRWL-------NYLRP 71 Score = 26.2 bits (56), Expect(2) = 0.007 Identities = 13/30 (43%), Positives = 14/30 (46%) Frame = +3 Query: 132 SDGDVAGCEKAHTNKGAWTKEEDDRLTAYI 221 S G +A KG WT EED L YI Sbjct: 8 SSGGSGSSAEAEVRKGPWTMEEDLILINYI 37
>TT2_ARATH (Q9FJA2) TRANSPARENT TESTA 2 protein (Myb-related protein 123)| (AtMYB123) (Myb-related transcription factor LBM2-like) Length = 258 Score = 31.6 bits (70), Expect(2) = 0.011 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 8/39 (20%) Frame = +1 Query: 226 HGEGCWRSLPKAAGL--------LRWEELPPPLDNYLRP 318 HGEG W +LP AGL LRW+ NYLRP Sbjct: 34 HGEGKWSTLPNQAGLKRCGKSCRLRWK-------NYLRP 65 Score = 24.6 bits (52), Expect(2) = 0.011 Identities = 10/17 (58%), Positives = 11/17 (64%) Frame = +3 Query: 171 NKGAWTKEEDDRLTAYI 221 N+GAWT ED L YI Sbjct: 15 NRGAWTDHEDKILRDYI 31
>MYB3_HORVU (P20027) Myb-related protein Hv33| Length = 302 Score = 30.4 bits (67), Expect(2) = 0.083 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 8/39 (20%) Frame = +1 Query: 226 HGEGCWRSLPKAAGL--------LRWEELPPPLDNYLRP 318 HG GCW S+P+ A L LRW NYLRP Sbjct: 34 HGVGCWSSVPRLAALNRCGKSCRLRW-------INYLRP 65 Score = 22.7 bits (47), Expect(2) = 0.083 Identities = 8/16 (50%), Positives = 12/16 (75%) Frame = +3 Query: 174 KGAWTKEEDDRLTAYI 221 KG W+ EED++L +I Sbjct: 16 KGLWSPEEDEKLYNHI 31
>LAF1_ARATH (Q9M0K4) Transcription factor LAF1 (Long after far-red light| protein 1) (Myb-related protein 18) (AtMYB18) Length = 283 Score = 25.8 bits (55), Expect(2) = 0.49 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 8/39 (20%) Frame = +1 Query: 226 HGEGCWRSLPKAAGL--------LRWEELPPPLDNYLRP 318 +G CW ++P AGL LRW NYLRP Sbjct: 30 YGHSCWTTVPIKAGLQRNGKSCRLRW-------INYLRP 61 Score = 24.6 bits (52), Expect(2) = 0.49 Identities = 8/16 (50%), Positives = 13/16 (81%) Frame = +3 Query: 174 KGAWTKEEDDRLTAYI 221 KG W+ EED++L ++I Sbjct: 12 KGLWSPEEDEKLRSFI 27
>RHLB_XANCP (Q8P4D4) ATP-dependent RNA helicase rhlB (EC 3.6.1.-)| Length = 573 Score = 30.4 bits (67), Expect = 1.2 Identities = 16/33 (48%), Positives = 18/33 (54%) Frame = -1 Query: 328 ALRSGGGSYPAEAAALPSGAGRRPWAGSASSPR 230 A R GG S P A+ SG GRR AG+ PR Sbjct: 430 ARRGGGRSGPGGASRSGSGGGRRDGAGADGKPR 462
>PODO_HUMAN (Q9NP85) Podocin| Length = 383 Score = 28.9 bits (63), Expect = 3.4 Identities = 17/33 (51%), Positives = 19/33 (57%) Frame = -1 Query: 328 ALRSGGGSYPAEAAALPSGAGRRPWAGSASSPR 230 A RSGGG EA PSG+GR AG+ PR Sbjct: 29 AERSGGGRGRQEAGPEPSGSGR---AGTPGEPR 58
>PURA1_HUMAN (Q8N142) Adenylosuccinate synthetase isozyme 1 (EC 6.3.4.4)| (IMP--aspartate ligase 1) (AdSS 1) (AMPSase 1) Length = 457 Score = 28.5 bits (62), Expect = 4.4 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +1 Query: 265 GLLRWEELPPPLDNYLR 315 G RWE+LPP NY+R Sbjct: 415 GARRWEDLPPQAQNYIR 431
>POR_CHLRE (Q39617) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 397 Score = 28.5 bits (62), Expect = 4.4 Identities = 22/59 (37%), Positives = 33/59 (55%) Frame = -1 Query: 307 SYPAEAAALPSGAGRRPWAGSASSPRRAPM*AVSRSSSSLVQAPLLVCAFSQPATSPSL 131 S A+AA + +GR +S R P A++ + SS+ + PL+VCA + A SPSL Sbjct: 17 SSKAQAAPAVAVSGR-------TSSRVMPAPALA-ARSSVARTPLVVCAATATAPSPSL 67
>MYB_AVIMB (P01104) Transforming protein Myb| Length = 382 Score = 28.5 bits (62), Expect = 4.4 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = +3 Query: 171 NKGAWTKEEDDRLTAYI 221 NKG WTKEED R+ ++ Sbjct: 20 NKGPWTKEEDQRVIEHV 36
>SYH_MESAU (P07178) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA| ligase) (HisRS) Length = 508 Score = 27.7 bits (60), Expect = 7.5 Identities = 12/29 (41%), Positives = 14/29 (48%) Frame = -1 Query: 313 GGSYPAEAAALPSGAGRRPWAGSASSPRR 227 G Y A +P+GAG PW G RR Sbjct: 333 GVIYVAVLLQMPTGAGEEPWCGQCGCWRR 361
>PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-containing| protein 2) (Plakophilin-related armadillo repeat protein-interacting PDZ protein) Length = 2766 Score = 27.3 bits (59), Expect = 9.8 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 10/43 (23%) Frame = -1 Query: 328 ALRSGGGSYPAEAAALPS----------GAGRRPWAGSASSPR 230 ++ +G G P + A+LP G+GR+ +GS SSP+ Sbjct: 991 SILNGAGGTPPKVASLPGSGETPKNGPRGSGRKEMSGSRSSPK 1033
>MYB_CHICK (P01103) Myb proto-oncogene protein (C-myb)| Length = 641 Score = 27.3 bits (59), Expect = 9.8 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = +3 Query: 135 DGDVAGCEKAHTNKGAWTKEEDDRL 209 DG + K H K WT+EED++L Sbjct: 27 DGLLPKAGKRHLGKTRWTREEDEKL 51
>SECY_MAIZE (O63066) Preprotein translocase secY subunit, chloroplast precursor| (CpSecY) Length = 553 Score = 27.3 bits (59), Expect = 9.8 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = +1 Query: 238 CWRSLPKAAGLLRWEELPPPLDNYLRP 318 CWR LP A PPPL + LRP Sbjct: 11 CWRGLPALA------RAPPPLSSPLRP 31
>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)| Length = 1285 Score = 27.3 bits (59), Expect = 9.8 Identities = 17/41 (41%), Positives = 23/41 (56%) Frame = -1 Query: 268 GRRPWAGSASSPRRAPM*AVSRSSSSLVQAPLLVCAFSQPA 146 GR+P G SSP AP + + +S+S+V AP A S A Sbjct: 165 GRKPGGGLLSSPGAAPA-SAAVTSASVVPAPAAPVASSSAA 204 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.136 0.446 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,168,502 Number of Sequences: 219361 Number of extensions: 495718 Number of successful extensions: 1988 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 1792 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1971 length of database: 80,573,946 effective HSP length: 84 effective length of database: 62,147,622 effective search space used: 1491542928 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
