ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet57g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 46 0.043
2gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare str... 46 0.043
3dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.043
4dbj|AK119222.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.043
5dbj|AK112059.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.043
6dbj|AK111566.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.043
7gb|AE005864.1| Caulobacter crescentus CB15 section 190 of 359 of... 42 0.67
8gb|AC087723.3| Oryza sativa chromosome 10 clone OSJNBa0036D19, c... 42 0.67
9dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.67
10gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 42 0.67
11gb|AC135420.4| Oryza sativa (japonica cultivar-group) chromosome... 40 2.7
12gb|AC145396.3| Oryza sativa (japonica cultivar-group) chromosome... 40 2.7
13emb|AJ006468.1|MAAJ6468 Metarhizium anisopliae nrr1 gene 40 2.7
14gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 2.7
15gb|AC023742.4| Drosophila melanogaster X BAC RP98-43C24 (Roswell... 40 2.7
16ref|NM_080331.2| Drosophila melanogaster bifid CG3578-RA (bi), mRNA 40 2.7
17dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.7
18gb|AE003431.5| Drosophila melanogaster chromosome X, section 15 ... 40 2.7
19gb|M81796.1|DROOPTBA Drosophila melanogaster optomotor-blind mRN... 40 2.7

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.043
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 115     tcatggagcgggagcgcctcacggcgg 141
               |||||||||||||||| ||||||||||
Sbjct: 7658301 tcatggagcgggagcggctcacggcgg 7658275



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>gb|AC129008.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBb0096L14, from chromosome 3, complete sequence
          Length = 131142

 Score = 46.1 bits (23), Expect = 0.043
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 115   tcatggagcgggagcgcctcacggcgg 141
             |||||||||||||||| ||||||||||
Sbjct: 56989 tcatggagcgggagcggctcacggcgg 57015



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.043
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 115     tcatggagcgggagcgcctcacggcgg 141
               |||||||||||||||| ||||||||||
Sbjct: 7656136 tcatggagcgggagcggctcacggcgg 7656110



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>dbj|AK119222.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-E03, full
           insert sequence
          Length = 2098

 Score = 46.1 bits (23), Expect = 0.043
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 115 tcatggagcgggagcgcctcacggcgg 141
           |||||||||||||||| ||||||||||
Sbjct: 139 tcatggagcgggagcggctcacggcgg 165



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>dbj|AK112059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-A11, full
           insert sequence
          Length = 2025

 Score = 46.1 bits (23), Expect = 0.043
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 115 tcatggagcgggagcgcctcacggcgg 141
           |||||||||||||||| ||||||||||
Sbjct: 139 tcatggagcgggagcggctcacggcgg 165



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>dbj|AK111566.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074J05, full
           insert sequence
          Length = 1556

 Score = 46.1 bits (23), Expect = 0.043
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 115 tcatggagcgggagcgcctcacggcgg 141
           |||||||||||||||| ||||||||||
Sbjct: 138 tcatggagcgggagcggctcacggcgg 164



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>gb|AE005864.1| Caulobacter crescentus CB15 section 190 of 359 of the complete genome
          Length = 8962

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 94   agtctgcgccggcggcggcgt 114
            |||||||||||||||||||||
Sbjct: 1144 agtctgcgccggcggcggcgt 1164



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>gb|AC087723.3| Oryza sativa chromosome 10 clone OSJNBa0036D19, complete sequence
          Length = 144359

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 117   atggagcgggagcgcctcacggcgg 141
             |||||||| ||||||||||||||||
Sbjct: 73347 atggagcgcgagcgcctcacggcgg 73323



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 117     atggagcgggagcgcctcacggcgg 141
               |||||||| ||||||||||||||||
Sbjct: 3640506 atggagcgcgagcgcctcacggcgg 3640482



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 42.1 bits (21), Expect = 0.67
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 117     atggagcgggagcgcctcacggcgg 141
               |||||||| ||||||||||||||||
Sbjct: 3640427 atggagcgcgagcgcctcacggcgg 3640403



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>gb|AC135420.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0060G17, complete sequence
          Length = 174949

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   ccggcggcggcgttcatgga 121
             ||||||||||||||||||||
Sbjct: 12919 ccggcggcggcgttcatgga 12938



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>gb|AC145396.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0042F15,
              complete sequence
          Length = 162959

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 102    ccggcggcggcgttcatgga 121
              ||||||||||||||||||||
Sbjct: 108104 ccggcggcggcgttcatgga 108123



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>emb|AJ006468.1|MAAJ6468 Metarhizium anisopliae nrr1 gene
          Length = 4733

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 81   tcgagatccatggagtctgcgccggcggcggc 112
            ||||||| ||||| ||| ||||||||||||||
Sbjct: 1267 tcgagattcatggcgtccgcgccggcggcggc 1236



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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 100     cgccggcggcggcgttcatg 119
               ||||||||||||||||||||
Sbjct: 3538964 cgccggcggcggcgttcatg 3538945



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>gb|AC023742.4| Drosophila melanogaster X BAC RP98-43C24 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 172203

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 189    gctgcccagcatcatcatca 208
              ||||||||||||||||||||
Sbjct: 136923 gctgcccagcatcatcatca 136942



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>ref|NM_080331.2| Drosophila melanogaster bifid CG3578-RA (bi), mRNA
          Length = 4060

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 189  gctgcccagcatcatcatca 208
            ||||||||||||||||||||
Sbjct: 3060 gctgcccagcatcatcatca 3079



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 102     ccggcggcggcgttcatgga 121
               ||||||||||||||||||||
Sbjct: 7923329 ccggcggcggcgttcatgga 7923348



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>gb|AE003431.5| Drosophila melanogaster chromosome X, section 15 of 74 of the complete
             sequence
          Length = 310993

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   gctgcccagcatcatcatca 208
             ||||||||||||||||||||
Sbjct: 93991 gctgcccagcatcatcatca 94010



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>gb|M81796.1|DROOPTBA Drosophila melanogaster optomotor-blind mRNA, complete cds
          Length = 4069

 Score = 40.1 bits (20), Expect = 2.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 189  gctgcccagcatcatcatca 208
            ||||||||||||||||||||
Sbjct: 3066 gctgcccagcatcatcatca 3085


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,705,212
Number of Sequences: 3902068
Number of extensions: 1705212
Number of successful extensions: 115675
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114966
Number of HSP's gapped (non-prelim): 709
length of query: 210
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 188
effective length of database: 17,147,199,772
effective search space: 3223673557136
effective search space used: 3223673557136
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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