ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet57g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransgly... 165 4e-38
2emb|AJ295943.1|FPR295943 Festuca pratensis mRNA for Xet1 protein 48 0.006
3ref|XM_479512.1| Oryza sativa (japonica cultivar-group), mRNA 40 1.4
4ref|XM_507412.1| PREDICTED Oryza sativa (japonica cultivar-group... 40 1.4
5ref|XM_506566.2| PREDICTED Oryza sativa (japonica cultivar-group... 40 1.4
6emb|X66125.1|OSPER O.sativa mRNA for peroxidase 40 1.4
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.4
8dbj|AP003817.3| Oryza sativa (japonica cultivar-group) genomic D... 40 1.4
9dbj|AK104710.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.4
10dbj|AK099382.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.4
11dbj|AK073202.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.4
12tpe|BN000640.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 40 1.4
13gb|AF014467.1|AF014467 Oryza sativa peroxidase (POX22.3) mRNA, c... 40 1.4
14emb|AL591784.1|SME591784 Sinorhizobium meliloti 1021 complete ch... 38 5.7
15gb|AC094098.4| Homo sapiens chromosome 5 clone RP11-141F7, compl... 38 5.7
16dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 38 5.7
17gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 38 5.7
18emb|AL713941.3|CNS07YP9 Oryza sativa chromosome 12, . BAC OSJNBa... 38 5.7

>emb|X93174.1|HVXETXEA H.vulgare mRNA for xyloglucan endotransglycosylase-like protein
           (XEA)
          Length = 1174

 Score =  165 bits (83), Expect = 4e-38
 Identities = 111/115 (96%), Gaps = 4/115 (3%)
 Strand = Plus / Plus

                                                                       
Query: 13  tccagcattct-agaccgagtgagcctacttt-gggagcacgca-cgcatggctcgcatg 69
           ||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 1   tccagcattctcagaccgagtgagcctacttttgggagcacgcaacgcatggctcgcatg 60

                                                                  
Query: 70  ggggcgtcggtgctttcgatcctgctcgcctcttgcgccct-gcggcggcgagct 123
           ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 61  ggggcgtcggtgctttcgatcctgctcgcctcttgcgccctggcggcggcgagct 115



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>emb|AJ295943.1|FPR295943 Festuca pratensis mRNA for Xet1 protein
          Length = 1187

 Score = 48.1 bits (24), Expect = 0.006
 Identities = 42/48 (87%)
 Strand = Plus / Plus

                                                           
Query: 57  catggctcgcatgggggcgtcggtgctttcgatcctgctcgcctcttg 104
           |||||||||||||| || |||||||||  |||||||||| || |||||
Sbjct: 123 catggctcgcatggcggtgtcggtgctggcgatcctgctggcgtcttg 170



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>ref|XM_479512.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1287

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 60  ggctcgcatgggggcgtcggtgct 83
           ||||||||||||||||||| ||||
Sbjct: 230 ggctcgcatgggggcgtcgctgct 253



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>ref|XM_507412.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1167_G06.113
           mRNA
          Length = 1304

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 60  ggctcgcatgggggcgtcggtgct 83
           ||||||||||||||||||| ||||
Sbjct: 232 ggctcgcatgggggcgtcgctgct 255



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>ref|XM_506566.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ1167_G06.113
           mRNA
          Length = 1291

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 60  ggctcgcatgggggcgtcggtgct 83
           ||||||||||||||||||| ||||
Sbjct: 234 ggctcgcatgggggcgtcgctgct 257



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>emb|X66125.1|OSPER O.sativa mRNA for peroxidase
          Length = 1287

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 60  ggctcgcatgggggcgtcggtgct 83
           ||||||||||||||||||| ||||
Sbjct: 183 ggctcgcatgggggcgtcgctgct 206



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 60       ggctcgcatgggggcgtcggtgct 83
                ||||||||||||||||||| ||||
Sbjct: 28620405 ggctcgcatgggggcgtcgctgct 28620428



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>dbj|AP003817.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1167_G06
          Length = 112386

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 60    ggctcgcatgggggcgtcggtgct 83
             ||||||||||||||||||| ||||
Sbjct: 86363 ggctcgcatgggggcgtcgctgct 86386



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>dbj|AK104710.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-F01, full
           insert sequence
          Length = 1287

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 60  ggctcgcatgggggcgtcggtgct 83
           ||||||||||||||||||| ||||
Sbjct: 230 ggctcgcatgggggcgtcgctgct 253



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>dbj|AK099382.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033069K12, full
           insert sequence
          Length = 1290

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 60  ggctcgcatgggggcgtcggtgct 83
           ||||||||||||||||||| ||||
Sbjct: 233 ggctcgcatgggggcgtcgctgct 256



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>dbj|AK073202.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023C17, full
           insert sequence
          Length = 1303

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 60  ggctcgcatgggggcgtcggtgct 83
           ||||||||||||||||||| ||||
Sbjct: 231 ggctcgcatgggggcgtcgctgct 254



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>tpe|BN000640.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx111 gene
           for class III peroxidase 111 precursor, exons 1-4
          Length = 1250

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 60  ggctcgcatgggggcgtcggtgct 83
           ||||||||||||||||||| ||||
Sbjct: 162 ggctcgcatgggggcgtcgctgct 185



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>gb|AF014467.1|AF014467 Oryza sativa peroxidase (POX22.3) mRNA, complete cds
          Length = 1306

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 60  ggctcgcatgggggcgtcggtgct 83
           ||||||||||||||||||| ||||
Sbjct: 205 ggctcgcatgggggcgtcgctgct 228



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>emb|AL591784.1|SME591784 Sinorhizobium meliloti 1021 complete chromosome; segment 3/12
          Length = 300000

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 79    gtgctttcgatcctgctcg 97
             |||||||||||||||||||
Sbjct: 41157 gtgctttcgatcctgctcg 41175



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>gb|AC094098.4| Homo sapiens chromosome 5 clone RP11-141F7, complete sequence
          Length = 138425

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 31     gtgagcctactttgggagc 49
              |||||||||||||||||||
Sbjct: 118322 gtgagcctactttgggagc 118340



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 47       agcacgcacgcatggctcg 65
                |||||||||||||||||||
Sbjct: 17044996 agcacgcacgcatggctcg 17044978



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 47       agcacgcacgcatggctcg 65
                |||||||||||||||||||
Sbjct: 16998372 agcacgcacgcatggctcg 16998354



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>emb|AL713941.3|CNS07YP9 Oryza sativa chromosome 12, . BAC OSJNBa0006M08 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 136254

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 47     agcacgcacgcatggctcg 65
              |||||||||||||||||||
Sbjct: 103747 agcacgcacgcatggctcg 103765


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 656,270
Number of Sequences: 3902068
Number of extensions: 656270
Number of successful extensions: 37223
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37116
Number of HSP's gapped (non-prelim): 104
length of query: 123
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 102
effective length of database: 17,151,101,840
effective search space: 1749412387680
effective search space used: 1749412387680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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