ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet57f01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY103995.1| Zea mays PCO102677 mRNA sequence 103 1e-19
2ref|XM_507368.1| PREDICTED Oryza sativa (japonica cultivar-group... 96 3e-17
3ref|XM_478692.1| Oryza sativa (japonica cultivar-group), mRNA 96 3e-17
4ref|XM_507367.1| PREDICTED Oryza sativa (japonica cultivar-group... 96 3e-17
5ref|XM_507366.1| PREDICTED Oryza sativa (japonica cultivar-group... 96 3e-17
6ref|XM_506405.2| PREDICTED Oryza sativa (japonica cultivar-group... 96 3e-17
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 96 3e-17
8dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic D... 96 3e-17
9dbj|AK119534.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 3e-17
10emb|Z50801.1|ZMCABCP29 Z.mays mRNA for chlorophyll a/b-binding p... 96 3e-17
11dbj|AK104619.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 3e-17
12dbj|AK104309.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 3e-17
13dbj|AK103924.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 3e-17
14dbj|AK098992.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 3e-17
15dbj|AK058293.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 3e-17
16gb|AF058796.1|AF058796 Oryza sativa chlorophyll a/b-binding prot... 96 3e-17
17emb|Y10786.1|SSY10786 S.stapfianus pSD.76 mRNA 84 1e-13
18gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 44 0.11
19ref|XM_960770.1| Encephalitozoon cuniculi GB-M1 hypothetical pro... 44 0.11
20gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 44 0.11
21emb|AL391737.2|CNS06C8G chromosome I of strain GB-M1 of Encephal... 44 0.11
22dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.44
23gb|AF333038.2| Streptomyces viridochromogenes Avilamycin A biosy... 42 0.44
24emb|AL662972.3|OSJN00173 Oryza sativa genomic DNA, chromosome 4,... 42 0.44
25ref|XM_493818.1| Oryza sativa (japonica cultivar-group), predic... 40 1.8
26gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 1.8
27emb|Z78205.1|BHT1UL Bovine herpesvirus type 1 UL22-35 genes 40 1.8
28emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome 40 1.8
29dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.8
30dbj|AK110783.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 1.8
31gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 1.8
32dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic D... 40 1.8
33gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, c... 38 6.9
34gb|AC116368.3| Oryza sativa (japonica cultivar-group) chromosome... 38 6.9
35gb|AC103550.13| Oryza sativa chromosome 3 BAC OSJNBa0079G12 geno... 38 6.9
36gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 38 6.9
37gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 38 6.9
38ref|XM_843078.1| Leishmania major strain Friedlin hypothetical p... 38 6.9
39gb|AY263398.1| Streptomyces vinaceus strain ATCC 11861 viomycin ... 38 6.9
40gb|CP000088.1| Thermobifida fusca YX, complete genome 38 6.9
41gb|AE008794.1| Salmonella typhimurium LT2, section 98 of 220 of ... 38 6.9
42gb|DQ021386.1| Cetostoma sp. AD-2005 28S ribosomal RNA gene, par... 38 6.9
43emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 38 6.9
44emb|AL627273.1| Salmonella enterica serovar Typhi (Salmonella ty... 38 6.9
45emb|AJ505006.1|POL505006 Sorangium cellulosum spiG gene (partial... 38 6.9
46gb|CP000249.1| Frankia sp. CcI3, complete genome 38 6.9
47gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome 38 6.9
48gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 38 6.9
49dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 38 6.9
50gb|AC007608.7| Homo sapiens chromosome 16 clone RP11-401P9, comp... 38 6.9
51gb|AC007334.8| Homo sapiens chromosome 16 clone RP11-147B17, com... 38 6.9
52gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 38 6.9
53gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 38 6.9
54dbj|AP006619.1| Nocardia farcinica IFM 10152 plasmid pNF1 DNA, c... 38 6.9
55dbj|AK104657.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 6.9
56dbj|AK059739.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 6.9
57gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi... 38 6.9
58gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 38 6.9
59gb|BC090067.1| Rattus norvegicus cDNA clone MGC:93613 IMAGE:7109... 38 6.9
60gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 38 6.9
61gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 38 6.9
62dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp... 38 6.9
63dbj|D78592.1| Rattus norvegicus mRNA for glucose-6-phosphatase c... 38 6.9 
>gb|AY103995.1| Zea mays PCO102677 mRNA sequence
          Length = 1225

 Score =  103 bits (52), Expect = 1e-19
 Identities = 67/72 (93%)
 Strand = Plus / Plus

                                                                       
Query: 74  gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133
           |||||||||||||||| ||||||||||||||||||||||| ||||| || ||||| ||||
Sbjct: 47  gagcagccatggcttcatcggtggccgccgcggcgagcacattcctgggcacccgcctgg 106

                       
Query: 134 cggacccggcgc 145
           ||||||||||||
Sbjct: 107 cggacccggcgc 118
to top
>ref|XM_507368.1| PREDICTED Oryza sativa (japonica cultivar-group), P0567H04.15 mRNA
          Length = 1156

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 66/72 (91%)
 Strand = Plus / Plus

                                                                       
Query: 74  gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133
           ||||||||||||| ||||||||||| || ||||||||||||||||| |||||  ||||||
Sbjct: 37  gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 96

                       
Query: 134 cggacccggcgc 145
           ||||||||||||
Sbjct: 97  cggacccggcgc 108
to top
>ref|XM_478692.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1152

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 66/72 (91%)
 Strand = Plus / Plus

                                                                       
Query: 74  gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133
           ||||||||||||| ||||||||||| || ||||||||||||||||| |||||  ||||||
Sbjct: 32  gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 91

                       
Query: 134 cggacccggcgc 145
           ||||||||||||
Sbjct: 92  cggacccggcgc 103
to top
>ref|XM_507367.1| PREDICTED Oryza sativa (japonica cultivar-group), P0567H04.15 mRNA
          Length = 1162

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 66/72 (91%)
 Strand = Plus / Plus

                                                                       
Query: 74  gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133
           ||||||||||||| ||||||||||| || ||||||||||||||||| |||||  ||||||
Sbjct: 39  gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 98

                       
Query: 134 cggacccggcgc 145
           ||||||||||||
Sbjct: 99  cggacccggcgc 110
to top
>ref|XM_507366.1| PREDICTED Oryza sativa (japonica cultivar-group), P0567H04.15 mRNA
          Length = 1183

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 66/72 (91%)
 Strand = Plus / Plus

                                                                       
Query: 74  gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133
           ||||||||||||| ||||||||||| || ||||||||||||||||| |||||  ||||||
Sbjct: 39  gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 98

                       
Query: 134 cggacccggcgc 145
           ||||||||||||
Sbjct: 99  cggacccggcgc 110
to top
>ref|XM_506405.2| PREDICTED Oryza sativa (japonica cultivar-group), P0567H04.15 mRNA
          Length = 1221

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 66/72 (91%)
 Strand = Plus / Plus

                                                                       
Query: 74  gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133
           ||||||||||||| ||||||||||| || ||||||||||||||||| |||||  ||||||
Sbjct: 53  gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 112

                       
Query: 134 cggacccggcgc 145
           ||||||||||||
Sbjct: 113 cggacccggcgc 124
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 66/72 (91%)
 Strand = Plus / Minus

                                                                            
Query: 74       gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133
                ||||||||||||| ||||||||||| || ||||||||||||||||| |||||  ||||||
Sbjct: 22264304 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 22264245

                            
Query: 134      cggacccggcgc 145
                ||||||||||||
Sbjct: 22264244 cggacccggcgc 22264233
to top
>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0567H04
          Length = 181420

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 66/72 (91%)
 Strand = Plus / Minus

                                                                         
Query: 74    gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133
             ||||||||||||| ||||||||||| || ||||||||||||||||| |||||  ||||||
Sbjct: 69550 gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 69491

                         
Query: 134   cggacccggcgc 145
             ||||||||||||
Sbjct: 69490 cggacccggcgc 69479
to top
>dbj|AK119534.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-B02, full
           insert sequence
          Length = 1234

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 66/72 (91%)
 Strand = Plus / Plus

                                                                       
Query: 74  gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133
           ||||||||||||| ||||||||||| || ||||||||||||||||| |||||  ||||||
Sbjct: 39  gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 98

                       
Query: 134 cggacccggcgc 145
           ||||||||||||
Sbjct: 99  cggacccggcgc 110
to top
>emb|Z50801.1|ZMCABCP29 Z.mays mRNA for chlorophyll a/b-binding protein CP29
          Length = 1162

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 63/68 (92%)
 Strand = Plus / Plus

                                                                       
Query: 78  agccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctggcgga 137
           |||||||||||| ||||||||||||||||||||||| ||||| || ||||| ||||||||
Sbjct: 7   agccatggcttcatcggtggccgccgcggcgagcacattcctgggcacccgcctggcgga 66

                   
Query: 138 cccggcgc 145
           ||||||||
Sbjct: 67  cccggcgc 74
to top
>dbj|AK104619.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-F11, full
           insert sequence
          Length = 1152

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 66/72 (91%)
 Strand = Plus / Plus

                                                                       
Query: 74  gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133
           ||||||||||||| ||||||||||| || ||||||||||||||||| |||||  ||||||
Sbjct: 32  gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 91

                       
Query: 134 cggacccggcgc 145
           ||||||||||||
Sbjct: 92  cggacccggcgc 103
to top
>dbj|AK104309.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D03, full
           insert sequence
          Length = 1169

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 66/72 (91%)
 Strand = Plus / Plus

                                                                       
Query: 74  gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133
           ||||||||||||| ||||||||||| || ||||||||||||||||| |||||  ||||||
Sbjct: 46  gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 105

                       
Query: 134 cggacccggcgc 145
           ||||||||||||
Sbjct: 106 cggacccggcgc 117
to top
>dbj|AK103924.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-C12, full
           insert sequence
          Length = 1183

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 66/72 (91%)
 Strand = Plus / Plus

                                                                       
Query: 74  gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133
           ||||||||||||| ||||||||||| || ||||||||||||||||| |||||  ||||||
Sbjct: 39  gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 98

                       
Query: 134 cggacccggcgc 145
           ||||||||||||
Sbjct: 99  cggacccggcgc 110
to top
>dbj|AK098992.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098H13, full
           insert sequence
          Length = 1156

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 66/72 (91%)
 Strand = Plus / Plus

                                                                       
Query: 74  gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133
           ||||||||||||| ||||||||||| || ||||||||||||||||| |||||  ||||||
Sbjct: 37  gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 96

                       
Query: 134 cggacccggcgc 145
           ||||||||||||
Sbjct: 97  cggacccggcgc 108
to top
>dbj|AK058293.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-F01, full
           insert sequence
          Length = 1221

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 66/72 (91%)
 Strand = Plus / Plus

                                                                       
Query: 74  gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133
           ||||||||||||| ||||||||||| || ||||||||||||||||| |||||  ||||||
Sbjct: 53  gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 112

                       
Query: 134 cggacccggcgc 145
           ||||||||||||
Sbjct: 113 cggacccggcgc 124
to top
>gb|AF058796.1|AF058796 Oryza sativa chlorophyll a/b-binding protein (RCABP69) mRNA,
           complete cds
          Length = 1178

 Score = 95.6 bits (48), Expect = 3e-17
 Identities = 66/72 (91%)
 Strand = Plus / Plus

                                                                       
Query: 74  gagcagccatggcttcgtcggtggccgccgcggcgagcacgttcctcgggacccggctgg 133
           ||||||||||||| ||||||||||| || ||||||||||||||||| |||||  ||||||
Sbjct: 37  gagcagccatggcgtcgtcggtggcagcggcggcgagcacgttcctggggacgaggctgg 96

                       
Query: 134 cggacccggcgc 145
           ||||||||||||
Sbjct: 97  cggacccggcgc 108
to top
>emb|Y10786.1|SSY10786 S.stapfianus pSD.76 mRNA
          Length = 332

 Score = 83.8 bits (42), Expect = 1e-13
 Identities = 45/46 (97%)
 Strand = Plus / Plus

                                                         
Query: 100 gccgcggcgagcacgttcctcgggacccggctggcggacccggcgc 145
           ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 54  gccgcggcgagcacgttcctcgggacccgcctggcggacccggcgc 99
to top
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 88      tcgtcggtggccgccgcggcgagcac 113
               ||||||||||||| ||||||||||||
Sbjct: 2881901 tcgtcggtggccgacgcggcgagcac 2881876
to top
>ref|XM_960770.1| Encephalitozoon cuniculi GB-M1 hypothetical protein (ECU01_0290)
          partial mRNA
          Length = 447

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 32 cgcacgcaaaggccgaggagga 53
          ||||||||||||||||||||||
Sbjct: 71 cgcacgcaaaggccgaggagga 92
to top
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 82      atggcttcgtcggtggccgccgcggcgagc 111
               |||||||||||| ||||||| |||||||||
Sbjct: 1698526 atggcttcgtcgttggccgcggcggcgagc 1698497
to top
>emb|AL391737.2|CNS06C8G chromosome I of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 209982

 Score = 44.1 bits (22), Expect = 0.11
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 32    cgcacgcaaaggccgaggagga 53
             ||||||||||||||||||||||
Sbjct: 43884 cgcacgcaaaggccgaggagga 43863
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 0.44
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 96       ggccgccgcggcgagcacgttcctc 120
                ||||||||||||| |||||||||||
Sbjct: 15345302 ggccgccgcggcgcgcacgttcctc 15345326
to top
>gb|AF333038.2| Streptomyces viridochromogenes Avilamycin A biosynthetic gene cluster,
             complete sequence
          Length = 59816

 Score = 42.1 bits (21), Expect = 0.44
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 99    cgccgcggcgagcacgttcctcggg 123
             |||||||||||||| ||||||||||
Sbjct: 49515 cgccgcggcgagcatgttcctcggg 49539
to top
>emb|AL662972.3|OSJN00173 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063G07,
             complete sequence
          Length = 157622

 Score = 42.1 bits (21), Expect = 0.44
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 96    ggccgccgcggcgagcacgttcctc 120
             ||||||||||||| |||||||||||
Sbjct: 34186 ggccgccgcggcgcgcacgttcctc 34210
to top
>ref|XM_493818.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1737

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 90   gtcggtggccgccgcggcgagcac 113
            ||||| ||||||||||||||||||
Sbjct: 1678 gtcggcggccgccgcggcgagcac 1701
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 90      gtcggtggccgccgcggcgagcac 113
               ||||| ||||||||||||||||||
Sbjct: 1687675 gtcggcggccgccgcggcgagcac 1687698



 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 93       ggtggccgccgcggcgagc 111
                |||||||||||||||||||
Sbjct: 29654646 ggtggccgccgcggcgagc 29654628
to top
>emb|Z78205.1|BHT1UL Bovine herpesvirus type 1 UL22-35 genes
          Length = 37000

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   cggtggccgccgcggcgagc 111
            ||||||||||||||||||||
Sbjct: 3373 cggtggccgccgcggcgagc 3392
to top
>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome
          Length = 135301

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    cggtggccgccgcggcgagc 111
             ||||||||||||||||||||
Sbjct: 34173 cggtggccgccgcggcgagc 34192
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 90      gtcggtggccgccgcggcgagcac 113
               ||||| ||||||||||||||||||
Sbjct: 1687673 gtcggcggccgccgcggcgagcac 1687696



 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 93       ggtggccgccgcggcgagc 111
                |||||||||||||||||||
Sbjct: 29746068 ggtggccgccgcggcgagc 29746050
to top
>dbj|AK110783.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-C04, full
            insert sequence
          Length = 1949

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 90   gtcggtggccgccgcggcgagcac 113
            ||||| ||||||||||||||||||
Sbjct: 1806 gtcggcggccgccgcggcgagcac 1829
to top
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 95      tggccgccgcggcgagcacg 114
               ||||||||||||||||||||
Sbjct: 2557863 tggccgccgcggcgagcacg 2557844
to top
>dbj|AP000615.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3,
              clone:P0043E01
          Length = 154128

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 90     gtcggtggccgccgcggcgagcac 113
              ||||| ||||||||||||||||||
Sbjct: 100138 gtcggcggccgccgcggcgagcac 100161
to top
>gb|CP000079.1| Leishmania major strain Friedlin chromosome 27, complete sequence
          Length = 1130447

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 89     cgtcggtggccgccgcggc 107
              |||||||||||||||||||
Sbjct: 903893 cgtcggtggccgccgcggc 903911
to top
>gb|AC116368.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0061D06, complete sequence
          Length = 172126

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 96    ggccgccgcggcgagcacg 114
             |||||||||||||||||||
Sbjct: 75100 ggccgccgcggcgagcacg 75118
to top
>gb|AC103550.13| Oryza sativa chromosome 3 BAC OSJNBa0079G12 genomic sequence, complete
              sequence
          Length = 163712

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 93     ggtggccgccgcggcgagc 111
              |||||||||||||||||||
Sbjct: 116731 ggtggccgccgcggcgagc 116749
to top
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 96      ggccgccgcggcgagcacg 114
               |||||||||||||||||||
Sbjct: 2262667 ggccgccgcggcgagcacg 2262685
to top
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 87      ttcgtcggtggccgccgcg 105
               |||||||||||||||||||
Sbjct: 1584374 ttcgtcggtggccgccgcg 1584392
to top
>ref|XM_843078.1| Leishmania major strain Friedlin hypothetical protein (LMJ_0476)
            partial mRNA
          Length = 5088

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 89   cgtcggtggccgccgcggc 107
            |||||||||||||||||||
Sbjct: 4558 cgtcggtggccgccgcggc 4540
to top
>gb|AY263398.1| Streptomyces vinaceus strain ATCC 11861 viomycin biosynthetic gene
             cluster, complete sequence
          Length = 36401

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 96    ggccgccgcggcgagcacg 114
             |||||||||||||||||||
Sbjct: 22465 ggccgccgcggcgagcacg 22483
to top
>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 91      tcggtggccgccgcggcgagcac 113
               |||||||||||| ||||||||||
Sbjct: 2961177 tcggtggccgccccggcgagcac 2961199



 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 91     tcggtggccgccgcggcga 109
              |||||||||||||||||||
Sbjct: 626934 tcggtggccgccgcggcga 626952
to top
>gb|AE008794.1| Salmonella typhimurium LT2, section 98 of 220 of the complete genome
          Length = 26591

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 80    ccatggcttcgtcggtggc 98
             |||||||||||||||||||
Sbjct: 19988 ccatggcttcgtcggtggc 20006
to top
>gb|DQ021386.1| Cetostoma sp. AD-2005 28S ribosomal RNA gene, partial sequence
          Length = 118

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 96  ggccgccgcggcgagcacg 114
           |||||||||||||||||||
Sbjct: 70  ggccgccgcggcgagcacg 88
to top
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 96     ggccgccgcggcgagcacg 114
              |||||||||||||||||||
Sbjct: 424039 ggccgccgcggcgagcacg 424057
to top
>emb|AL627273.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18,
              complete chromosome; segment 9/20
          Length = 250050

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 80     ccatggcttcgtcggtggc 98
              |||||||||||||||||||
Sbjct: 125783 ccatggcttcgtcggtggc 125801
to top
>emb|AJ505006.1|POL505006 Sorangium cellulosum spiG gene (partial), spiH gene, spiI gene, spiJ
            gene, spiK gene, spiL gene and spiZ gene
          Length = 48000

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 99   cgccgcggcgagcacgttcctcg 121
            ||||||||||| |||||||||||
Sbjct: 1987 cgccgcggcgaacacgttcctcg 2009
to top
>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 92      cggtggccgccgcggcgagcacg 114
               ||||||||||||| |||||||||
Sbjct: 1792793 cggtggccgccgctgcgagcacg 1792771
to top
>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 10     atagcaccagccgccaccc 28
              |||||||||||||||||||
Sbjct: 951460 atagcaccagccgccaccc 951478
to top
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 96      ggccgccgcggcgagcacg 114
               |||||||||||||||||||
Sbjct: 1564367 ggccgccgcggcgagcacg 1564349
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 96      ggccgccgcggcgagcacg 114
               |||||||||||||||||||
Sbjct: 9674577 ggccgccgcggcgagcacg 9674559
to top
>gb|AC007608.7| Homo sapiens chromosome 16 clone RP11-401P9, complete sequence
          Length = 169773

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 61     aggaggagcgagtgagcag 79
              |||||||||||||||||||
Sbjct: 118502 aggaggagcgagtgagcag 118484
to top
>gb|AC007334.8| Homo sapiens chromosome 16 clone RP11-147B17, complete sequence
          Length = 170791

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 61    aggaggagcgagtgagcag 79
             |||||||||||||||||||
Sbjct: 68047 aggaggagcgagtgagcag 68029
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 96      ggccgccgcggcgagcacg 114
               |||||||||||||||||||
Sbjct: 1886618 ggccgccgcggcgagcacg 1886636
to top
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 80     ccatggcttcgtcggtggc 98
              |||||||||||||||||||
Sbjct: 819971 ccatggcttcgtcggtggc 819953
to top
>dbj|AP006619.1| Nocardia farcinica IFM 10152 plasmid pNF1 DNA, complete sequence
          Length = 184026

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 92     cggtggccgccgcggcgag 110
              |||||||||||||||||||
Sbjct: 124701 cggtggccgccgcggcgag 124683
to top
>dbj|AK104657.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-D03, full
           insert sequence
          Length = 1036

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 96  ggccgccgcggcgagcacg 114
           |||||||||||||||||||
Sbjct: 84  ggccgccgcggcgagcacg 66
to top
>dbj|AK059739.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-F02, full
           insert sequence
          Length = 1044

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 96  ggccgccgcggcgagcacg 114
           |||||||||||||||||||
Sbjct: 84  ggccgccgcggcgagcacg 66
to top
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome
          Length = 4791961

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 80     ccatggcttcgtcggtggc 98
              |||||||||||||||||||
Sbjct: 827153 ccatggcttcgtcggtggc 827135
to top
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 80      ccatggcttcgtcggtggc 98
               |||||||||||||||||||
Sbjct: 2231293 ccatggcttcgtcggtggc 2231311
to top
>gb|BC090067.1| Rattus norvegicus cDNA clone MGC:93613 IMAGE:7109006, complete cds
          Length = 2293

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 42   ggccgaggaggacaaagct 60
            |||||||||||||||||||
Sbjct: 1769 ggccgaggaggacaaagct 1751
to top
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 96      ggccgccgcggcgagcacg 114
               |||||||||||||||||||
Sbjct: 1625057 ggccgccgcggcgagcacg 1625075
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 96      ggccgccgcggcgagcacg 114
               |||||||||||||||||||
Sbjct: 9746274 ggccgccgcggcgagcacg 9746256
to top
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 90      gtcggtggccgccgcggcg 108
               |||||||||||||||||||
Sbjct: 1897090 gtcggtggccgccgcggcg 1897072



 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 88      tcgtcggtggccgccgcgg 106
               |||||||||||||||||||
Sbjct: 1767237 tcgtcggtggccgccgcgg 1767219
to top
>dbj|D78592.1| Rattus norvegicus mRNA for glucose-6-phosphatase catalytic subunit,
            complete cds
          Length = 2275

 Score = 38.2 bits (19), Expect = 6.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 42   ggccgaggaggacaaagct 60
            |||||||||||||||||||
Sbjct: 1781 ggccgaggaggacaaagct 1763


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 894,447
Number of Sequences: 3902068
Number of extensions: 894447
Number of successful extensions: 74540
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71671
Number of HSP's gapped (non-prelim): 2869
length of query: 145
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 124
effective length of database: 17,151,101,840
effective search space: 2126736628160
effective search space used: 2126736628160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
to top