ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet57e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atr... 28 5.4
2ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atr... 28 5.4
3HIS1_THET8 (Q5SM15) ATP phosphoribosyltransferase (EC 2.4.2.17) ... 28 7.1
4HIS1_THET2 (P62381) ATP phosphoribosyltransferase (EC 2.4.2.17) ... 28 7.1

>ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)|
          Length = 1186

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 95  LTMSSARIGPIKPGLGAKRRGHAPLPTH 12
           L  S+A  GP  P  GA+   H P+ TH
Sbjct: 451 LANSNAHPGPFPPSTGAQSTAHPPVSTH 478



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>ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)|
          Length = 1185

 Score = 28.5 bits (62), Expect = 5.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 95  LTMSSARIGPIKPGLGAKRRGHAPLPTH 12
           L  S+A  GP  P  GA+   H P+ TH
Sbjct: 452 LANSNAHPGPFPPSTGAQSTAHPPVSTH 479



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>HIS1_THET8 (Q5SM15) ATP phosphoribosyltransferase (EC 2.4.2.17) (ATP-PRTase)|
           (ATP-PRT)
          Length = 206

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +1

Query: 16  VGSGACPLLLAPRPGFIGPIR 78
           +G GAC L L  RPG  GPIR
Sbjct: 89  LGFGACRLSLIRRPGDTGPIR 109



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>HIS1_THET2 (P62381) ATP phosphoribosyltransferase (EC 2.4.2.17) (ATP-PRTase)|
           (ATP-PRT)
          Length = 206

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +1

Query: 16  VGSGACPLLLAPRPGFIGPIR 78
           +G GAC L L  RPG  GPIR
Sbjct: 89  LGFGACRLSLIRRPGDTGPIR 109


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,830,070
Number of Sequences: 219361
Number of extensions: 339619
Number of successful extensions: 1114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 80,573,946
effective HSP length: 16
effective length of database: 77,064,170
effective search space used: 1849540080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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