>NUP88_HUMAN (Q99567) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88|
           kDa nuclear pore complex protein)
          Length = 741

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 126 MASPSLPCRQRLGKRGTWSLPPLLSMEVLCM 34
           + +  LPCRQ    RG W +P +L   ++C+
Sbjct: 453 LCTKPLPCRQPAPIRGFWIVPDILGPTMICI 483

>NUP88_MOUSE (Q8CEC0) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88|
           kDa nuclear pore complex protein)
          Length = 753

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 126 MASPSLPCRQRLGKRGTWSLPPLLSMEVLCM 34
           + +  LPCRQ    RG W +P +L   ++C+
Sbjct: 454 LCTKPLPCRQPAPIRGFWIVPDILGPTMICI 484

>NUP88_RAT (O08658) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88|
           kDa nuclear pore complex protein) (Nucleoporin Nup84)
          Length = 742

 Score = 29.3 bits (64), Expect = 3.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 126 MASPSLPCRQRLGKRGTWSLPPLLSMEVLCM 34
           + +  LPCRQ    RG W +P +L   ++C+
Sbjct: 454 LCTKPLPCRQPAPIRGFWIVPDILGPTMICI 484


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,575,663
Number of Sequences: 219361
Number of extensions: 254443
Number of successful extensions: 933
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 80,573,946
effective HSP length: 17
effective length of database: 76,844,809
effective search space used: 1844275416
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)