ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baet57d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 42 0.45
2ref|NM_116204.2| Arabidopsis thaliana unknown protein AT3G63390 ... 40 1.8
3gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 1.8
4gb|BT025528.1| Arabidopsis thaliana At3g63390 mRNA, complete cds 40 1.8
5emb|AL163818.1|ATMAA21 Arabidopsis thaliana DNA chromosome 3, P1... 40 1.8
6gb|AY085982.1| Arabidopsis thaliana clone 20404 mRNA, complete s... 40 1.8
7gb|AF053631.1| Homo sapiens citrate synthase mRNA, complete cds 38 7.0
8emb|AL357353.12| Human DNA sequence from clone RP11-251L16 on ch... 38 7.0
9emb|AL139114.12| Human DNA sequence from clone RP11-328C23 on ch... 38 7.0
10gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 38 7.0

>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 42.1 bits (21), Expect = 0.45
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 101     caccgaagcaatccagatcga 121
               |||||||||||||||||||||
Sbjct: 5374622 caccgaagcaatccagatcga 5374642



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>ref|NM_116204.2| Arabidopsis thaliana unknown protein AT3G63390 mRNA, complete cds
          Length = 803

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 44  ccaccagatccccgccacca 63
           ||||||||||||||||||||
Sbjct: 279 ccaccagatccccgccacca 260



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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 110     aatccagatcgagcaccccgagct 133
               |||||||||||| |||||||||||
Sbjct: 3756468 aatccagatcgaacaccccgagct 3756445



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>gb|BT025528.1| Arabidopsis thaliana At3g63390 mRNA, complete cds
          Length = 528

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 44  ccaccagatccccgccacca 63
           ||||||||||||||||||||
Sbjct: 254 ccaccagatccccgccacca 235



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>emb|AL163818.1|ATMAA21 Arabidopsis thaliana DNA chromosome 3, P1 clone MAA21 (ESSA project)
          Length = 79153

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    ccaccagatccccgccacca 63
             ||||||||||||||||||||
Sbjct: 33990 ccaccagatccccgccacca 34009



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>gb|AY085982.1| Arabidopsis thaliana clone 20404 mRNA, complete sequence
          Length = 752

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 44  ccaccagatccccgccacca 63
           ||||||||||||||||||||
Sbjct: 279 ccaccagatccccgccacca 260



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>gb|AF053631.1| Homo sapiens citrate synthase mRNA, complete cds
          Length = 1636

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 33  tttttatctccccaccagatccc 55
           |||||| ||||||||||||||||
Sbjct: 129 tttttacctccccaccagatccc 151



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>emb|AL357353.12| Human DNA sequence from clone RP11-251L16 on chromosome 10, complete
             sequence
          Length = 129800

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 28    cccagtttttatctcccca 46
             |||||||||||||||||||
Sbjct: 67286 cccagtttttatctcccca 67304



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>emb|AL139114.12| Human DNA sequence from clone RP11-328C23 on chromosome 9p22.3-24.1,
             complete sequence
          Length = 132139

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 33    tttttatctccccaccaga 51
             |||||||||||||||||||
Sbjct: 31239 tttttatctccccaccaga 31257



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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 38.2 bits (19), Expect = 7.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 47      ccagatccccgccaccagc 65
               |||||||||||||||||||
Sbjct: 1127033 ccagatccccgccaccagc 1127051


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 975,779
Number of Sequences: 3902068
Number of extensions: 975779
Number of successful extensions: 67690
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67602
Number of HSP's gapped (non-prelim): 88
length of query: 146
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 125
effective length of database: 17,151,101,840
effective search space: 2143887730000
effective search space used: 2143887730000
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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