>RK1_PEA (P49208) 50S ribosomal protein L1, chloroplast precursor (Fragment)|
          Length = 208

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 20/32 (62%), Positives = 22/32 (68%)
 Frame = +2

Query: 41  APTRPRTGKAALPLKRDRTRSKRYLEIQKLRE 136
           +P   R GK    LK DR RSKR+LEIQKLRE
Sbjct: 37  SPLSLRQGKLHWRLKSDRVRSKRFLEIQKLRE 68

>VL1_HPV11 (P04012) Major capsid protein L1|
          Length = 501

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 5   EDGYGGRGPAFTAPTRPRTGKAALPLKRDRTRSKR 109
           + GY GR  A T   RP   K +   KR RT++K+
Sbjct: 467 QSGYRGRTSARTGIKRPAVSKPSTAPKRKRTKTKK 501

>EAD_EBV (P03191) Early antigen protein D (EA-D)|
          Length = 404

 Score = 27.7 bits (60), Expect = 9.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 23  RGPAFTAPTRPRTGKAALPLKRDRTRSKRYLEIQKLRE 136
           R P + +P RP T   A+P     T  +R L +Q  R+
Sbjct: 343 RTPTWESPARPETPSPAIPSHSSNTALERPLAVQLARK 380


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,147,605
Number of Sequences: 219361
Number of extensions: 149307
Number of successful extensions: 520
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 80,573,946
effective HSP length: 23
effective length of database: 75,528,643
effective search space used: 1812687432
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)